ClCG02G023860 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG02G023860
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionTransmembrane protein
LocationCG_Chr02: 38210196 .. 38210576 (-)
RNA-Seq ExpressionClCG02G023860
SyntenyClCG02G023860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGATACAACAACTACTACTACTACAGGTACCCTTACTTGGAGTACTTGACATTGCCTCCATTGCAGCTTTGTGTGTTTGGGATGATCCTTCTGCTGGTGATGGCCTTTTCATGGTACATTTTCTATGACTCCTTTCTTGAGGATTTCATCTTCCAACTCAAGCTCTTCCTCCTCACTGTCCCCTTGCTTCTCCTCCTCCTCCTACACATTCTCTCCCTCGGCCTCCCCTTTCTCGTCCCCTTGCCCCAGCAGGACTACCTCCACCGTGCCGGTGGCTCACCCTGGGGCGTCGCCCTCCTCCTTGTCTTCCTTCTCTATGTCATCTCTCACCAGTCTCACTACCACCAACGTTGGTTCCCTTTCGGGTATAGATAA

mRNA sequence

ATGGCGAGATACAACAACTACTACTACTACAGGTACCCTTACTTGGAGTACTTGACATTGCCTCCATTGCAGCTTTGTGTGTTTGGGATGATCCTTCTGCTGGTGATGGCCTTTTCATGGTACATTTTCTATGACTCCTTTCTTGAGGATTTCATCTTCCAACTCAAGCTCTTCCTCCTCACTGTCCCCTTGCTTCTCCTCCTCCTCCTACACATTCTCTCCCTCGGCCTCCCCTTTCTCGTCCCCTTGCCCCAGCAGGACTACCTCCACCGTGCCGGTGGCTCACCCTGGGGCGTCGCCCTCCTCCTTGTCTTCCTTCTCTATGTCATCTCTCACCAGTCTCACTACCACCAACGTTGGTTCCCTTTCGGGTATAGATAA

Coding sequence (CDS)

ATGGCGAGATACAACAACTACTACTACTACAGGTACCCTTACTTGGAGTACTTGACATTGCCTCCATTGCAGCTTTGTGTGTTTGGGATGATCCTTCTGCTGGTGATGGCCTTTTCATGGTACATTTTCTATGACTCCTTTCTTGAGGATTTCATCTTCCAACTCAAGCTCTTCCTCCTCACTGTCCCCTTGCTTCTCCTCCTCCTCCTACACATTCTCTCCCTCGGCCTCCCCTTTCTCGTCCCCTTGCCCCAGCAGGACTACCTCCACCGTGCCGGTGGCTCACCCTGGGGCGTCGCCCTCCTCCTTGTCTTCCTTCTCTATGTCATCTCTCACCAGTCTCACTACCACCAACGTTGGTTCCCTTTCGGGTATAGATAA

Protein sequence

MARYNNYYYYRYPYLEYLTLPPLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLLTVPLLLLLLLHILSLGLPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQRWFPFGYR
Homology
BLAST of ClCG02G023860 vs. NCBI nr
Match: KAG6570356.1 (hypothetical protein SDJN03_29271, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010237.1 hypothetical protein SDJN02_27029, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 221.1 bits (562), Expect = 5.5e-54
Identity = 115/126 (91.27%), Postives = 121/126 (96.03%), Query Frame = 0

Query: 1   MARYNNYYYYRYPYLEYLTLPPLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLL 60
           MARY  YYY+RYPYLEYLTLPPLQLCVFG ILLLVMAFSWYIFYDSFLED IFQLKLFLL
Sbjct: 1   MARY--YYYHRYPYLEYLTLPPLQLCVFGGILLLVMAFSWYIFYDSFLEDIIFQLKLFLL 60

Query: 61  TVPLLLLLLLHILSLGLPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQRW 120
           TVPLLLLLLLH+LSLGLPFLVPLP+Q+ LHRAGGSPWGVA+LLVFLLYVISHQSHYH+RW
Sbjct: 61  TVPLLLLLLLHLLSLGLPFLVPLPEQNSLHRAGGSPWGVAILLVFLLYVISHQSHYHRRW 120

Query: 121 FPFGYR 127
           FPFGYR
Sbjct: 121 FPFGYR 124

BLAST of ClCG02G023860 vs. NCBI nr
Match: XP_022756288.1 (uncharacterized protein LOC111304026 [Durio zibethinus])

HSP 1 Score: 150.6 bits (379), Expect = 9.1e-33
Identity = 75/114 (65.79%), Postives = 94/114 (82.46%), Query Frame = 0

Query: 9   YYRYPYLEYLTLPPLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLLTVPLLLLL 68
           YYRY +L+YL+ PP+ LC+F  IL  V+ FSWYI Y+S  EDFI QLK FL+  PL+LL+
Sbjct: 4   YYRYSFLDYLSPPPVHLCLFVFILFFVLGFSWYINYESMFEDFINQLKFFLMLTPLVLLV 63

Query: 69  LLHILSLGLPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQRWFP 123
           L+H LS  +PFL+PLP+QD LHRAGGSPWGVAL+LVFLLY+IS+QS +H+RWFP
Sbjct: 64  LVHCLSGRVPFLIPLPEQDSLHRAGGSPWGVALVLVFLLYMISYQSSFHERWFP 117

BLAST of ClCG02G023860 vs. NCBI nr
Match: XP_007014761.1 (PREDICTED: uncharacterized protein LOC18589643 [Theobroma cacao] >EOY32380.1 Uncharacterized protein TCM_040264 [Theobroma cacao])

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-32
Identity = 76/116 (65.52%), Postives = 92/116 (79.31%), Query Frame = 0

Query: 9   YYRYPYLEYLTLPPLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLLTVPLLLLL 68
           YYR  +L+YL+LPPL LC F  IL  V+ FSWYI Y+S  EDFI QLK FL+  P++LLL
Sbjct: 4   YYRDSFLDYLSLPPLHLCFFVSILFFVLGFSWYINYESMFEDFINQLKFFLMLSPVVLLL 63

Query: 69  LLHILSLGLPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQRWFPFG 125
           L+H  S  +PFL+PLP+QD LHR GGSPWGVALLLVFLLY+IS+QS +H+RWFP G
Sbjct: 64  LIHCFSGSVPFLIPLPEQDSLHRTGGSPWGVALLLVFLLYMISYQSSFHERWFPLG 119

BLAST of ClCG02G023860 vs. NCBI nr
Match: XP_021278994.1 (uncharacterized protein LOC110412707 [Herrania umbratica])

HSP 1 Score: 149.1 bits (375), Expect = 2.6e-32
Identity = 76/116 (65.52%), Postives = 93/116 (80.17%), Query Frame = 0

Query: 9   YYRYPYLEYLTLPPLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLLTVPLLLLL 68
           YYR  +L+YL+LPPL LCVF  IL  V+ FSWYI Y+S  EDFI QLK FL+  P++LLL
Sbjct: 4   YYRDSFLDYLSLPPLHLCVFVSILFFVLGFSWYINYESMFEDFINQLKFFLMLSPVVLLL 63

Query: 69  LLHILSLGLPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQRWFPFG 125
           L+H  S  +PFL+PLP+QD LHRAGGSPWGVAL+LVFLLY+IS+QS + +RWFP G
Sbjct: 64  LVHCFSGSVPFLIPLPEQDSLHRAGGSPWGVALVLVFLLYMISYQSSFQERWFPLG 119

BLAST of ClCG02G023860 vs. NCBI nr
Match: XP_012462541.1 (PREDICTED: uncharacterized protein LOC105782384 [Gossypium raimondii] >XP_016734953.1 uncharacterized protein LOC107945445 [Gossypium hirsutum] >XP_017605397.1 PREDICTED: uncharacterized protein LOC108452152 [Gossypium arboreum] >XP_040941762.1 uncharacterized protein LOC121212647 [Gossypium hirsutum] >KAB1996691.1 hypothetical protein ES319_D13G249000v1 [Gossypium barbadense] >TYG38918.1 hypothetical protein ES288_D13G262800v1 [Gossypium darwinii] >TYH36452.1 hypothetical protein ES332_D13G265700v1 [Gossypium tomentosum] >KAB2050259.1 hypothetical protein ES319_A13G234100v1 [Gossypium barbadense] >KAG4113345.1 hypothetical protein ERO13_D13G217700v2 [Gossypium hirsutum])

HSP 1 Score: 145.2 bits (365), Expect = 3.8e-31
Identity = 73/116 (62.93%), Postives = 93/116 (80.17%), Query Frame = 0

Query: 9   YYRYPYLEYLTLPPLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLLTVPLLLLL 68
           YYR  Y++YL+LPPL LC F  IL  V+ FSWY+ Y+S LEDF+ QLK FL+  P++LLL
Sbjct: 4   YYRDSYMDYLSLPPLHLCFFISILFFVLGFSWYLNYESVLEDFMNQLKFFLMLAPIVLLL 63

Query: 69  LLHILSLGLPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQRWFPFG 125
           LLH  S  +P L+P P++D LHRAGGSPWGVAL+LV LLY+IS+QS++H+RWFPFG
Sbjct: 64  LLHCFSGRVPSLIPEPEKDSLHRAGGSPWGVALVLVLLLYMISYQSYFHERWFPFG 119

BLAST of ClCG02G023860 vs. ExPASy TrEMBL
Match: A0A0A0KZ55 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G280660 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 9.4e-52
Identity = 110/126 (87.30%), Postives = 116/126 (92.06%), Query Frame = 0

Query: 1   MARYNNYYYYRYPYLEYLTLPPLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLL 60
           MARYN  YYYRYPYLEYLTLPPLQLCVF +ILL+VMAFSWY FY SFLEDFIFQLKLFLL
Sbjct: 1   MARYN--YYYRYPYLEYLTLPPLQLCVFVVILLVVMAFSWYFFYYSFLEDFIFQLKLFLL 60

Query: 61  TVPLLLLLLLHILSLGLPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQRW 120
           TVPLLLLLLLH+LS G  FL+PLP+QD LHRAGGSPWGVA+LLVF LYVISHQSHYHQRW
Sbjct: 61  TVPLLLLLLLHLLSFGFSFLLPLPEQDSLHRAGGSPWGVAILLVFFLYVISHQSHYHQRW 120

Query: 121 FPFGYR 127
           FPFGYR
Sbjct: 121 FPFGYR 124

BLAST of ClCG02G023860 vs. ExPASy TrEMBL
Match: A0A6P5ZU06 (uncharacterized protein LOC111304026 OS=Durio zibethinus OX=66656 GN=LOC111304026 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.4e-33
Identity = 75/114 (65.79%), Postives = 94/114 (82.46%), Query Frame = 0

Query: 9   YYRYPYLEYLTLPPLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLLTVPLLLLL 68
           YYRY +L+YL+ PP+ LC+F  IL  V+ FSWYI Y+S  EDFI QLK FL+  PL+LL+
Sbjct: 4   YYRYSFLDYLSPPPVHLCLFVFILFFVLGFSWYINYESMFEDFINQLKFFLMLTPLVLLV 63

Query: 69  LLHILSLGLPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQRWFP 123
           L+H LS  +PFL+PLP+QD LHRAGGSPWGVAL+LVFLLY+IS+QS +H+RWFP
Sbjct: 64  LVHCLSGRVPFLIPLPEQDSLHRAGGSPWGVALVLVFLLYMISYQSSFHERWFP 117

BLAST of ClCG02G023860 vs. ExPASy TrEMBL
Match: A0A061GR99 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_040264 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.7e-33
Identity = 76/116 (65.52%), Postives = 92/116 (79.31%), Query Frame = 0

Query: 9   YYRYPYLEYLTLPPLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLLTVPLLLLL 68
           YYR  +L+YL+LPPL LC F  IL  V+ FSWYI Y+S  EDFI QLK FL+  P++LLL
Sbjct: 4   YYRDSFLDYLSLPPLHLCFFVSILFFVLGFSWYINYESMFEDFINQLKFFLMLSPVVLLL 63

Query: 69  LLHILSLGLPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQRWFPFG 125
           L+H  S  +PFL+PLP+QD LHR GGSPWGVALLLVFLLY+IS+QS +H+RWFP G
Sbjct: 64  LIHCFSGSVPFLIPLPEQDSLHRTGGSPWGVALLLVFLLYMISYQSSFHERWFPLG 119

BLAST of ClCG02G023860 vs. ExPASy TrEMBL
Match: A0A6J0ZX76 (uncharacterized protein LOC110412707 OS=Herrania umbratica OX=108875 GN=LOC110412707 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.3e-32
Identity = 76/116 (65.52%), Postives = 93/116 (80.17%), Query Frame = 0

Query: 9   YYRYPYLEYLTLPPLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLLTVPLLLLL 68
           YYR  +L+YL+LPPL LCVF  IL  V+ FSWYI Y+S  EDFI QLK FL+  P++LLL
Sbjct: 4   YYRDSFLDYLSLPPLHLCVFVSILFFVLGFSWYINYESMFEDFINQLKFFLMLSPVVLLL 63

Query: 69  LLHILSLGLPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQRWFPFG 125
           L+H  S  +PFL+PLP+QD LHRAGGSPWGVAL+LVFLLY+IS+QS + +RWFP G
Sbjct: 64  LVHCFSGSVPFLIPLPEQDSLHRAGGSPWGVALVLVFLLYMISYQSSFQERWFPLG 119

BLAST of ClCG02G023860 vs. ExPASy TrEMBL
Match: A0A5J5NVD3 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A13G234100v1 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.8e-31
Identity = 73/116 (62.93%), Postives = 93/116 (80.17%), Query Frame = 0

Query: 9   YYRYPYLEYLTLPPLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLLTVPLLLLL 68
           YYR  Y++YL+LPPL LC F  IL  V+ FSWY+ Y+S LEDF+ QLK FL+  P++LLL
Sbjct: 4   YYRDSYMDYLSLPPLHLCFFISILFFVLGFSWYLNYESVLEDFMNQLKFFLMLAPIVLLL 63

Query: 69  LLHILSLGLPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQRWFPFG 125
           LLH  S  +P L+P P++D LHRAGGSPWGVAL+LV LLY+IS+QS++H+RWFPFG
Sbjct: 64  LLHCFSGRVPSLIPEPEKDSLHRAGGSPWGVALVLVLLLYMISYQSYFHERWFPFG 119

BLAST of ClCG02G023860 vs. TAIR 10
Match: AT5G19875.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-26
Identity = 58/116 (50.00%), Postives = 83/116 (71.55%), Query Frame = 0

Query: 9   YYRYPYLEYLTLPPLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLLTVPLLLLL 68
           YY   YL+YL+LP   LC   +++  V++F+WY+ ++S +ED +  LKL  +  PL LLL
Sbjct: 6   YYGSSYLDYLSLPNPHLCFLFIVVFFVLSFTWYLNFESIIEDTLDHLKLVFIFTPLFLLL 65

Query: 69  LLHILSLGLPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQRWFPFG 125
           L+H  S GL F VP P+QD +HRAG SPWGVA +LV +L+++S+QS + +RWFPFG
Sbjct: 66  LVHFFSGGLSFYVPWPEQDSIHRAGSSPWGVAAVLVLILFMVSYQSDFQERWFPFG 121

BLAST of ClCG02G023860 vs. TAIR 10
Match: AT2G31940.1 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 227 Blast hits to 227 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 227; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 94.7 bits (234), Expect = 5.5e-20
Identity = 52/107 (48.60%), Postives = 75/107 (70.09%), Query Frame = 0

Query: 22  PLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLLTVPLLLLLLLHILS----LG- 81
           PL LCVF +ILL+ +  SWY  Y+  +E F +Q KL L+  PLLLLL +H LS    +G 
Sbjct: 12  PLHLCVFVLILLMFVTISWYASYEPVIEGFTYQFKLALMASPLLLLLAVHFLSDDQGVGG 71

Query: 82  -LPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQRWFP 123
            +  L+ L +++ L+RAGG+PWGVA +LVFL +++S+QS + +RWFP
Sbjct: 72  MMTSLIHLNERESLYRAGGTPWGVAFMLVFLFFMVSYQSQFQERWFP 118

BLAST of ClCG02G023860 vs. TAIR 10
Match: AT5G42146.1 (unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 9.1e-07
Identity = 38/108 (35.19%), Postives = 55/108 (50.93%), Query Frame = 0

Query: 21  PPLQLCVFGMILLLVMAFSWYIFYDSFLEDFIFQLKLFLLTVPLLLLLLL------HILS 80
           PPL L     I+ L++  S Y  Y   +E     LKLF+L +P+L + +L      H L 
Sbjct: 28  PPLTLLALLAIISLLLFLSSYPRYKYEVEKTAANLKLFMLFLPILFVFVLVSLSFVHRLL 87

Query: 81  LGLPFLVPLPQQDYLHRAGGSPWGVALLLVFLLYVISHQSHYHQRWFP 123
               + V   Q   L   G  PWGV L+L+ LL ++S QS++H  W+P
Sbjct: 88  FKSSYSVRANQAKSLFGEGNFPWGVLLMLILLLLLVSKQSYFHSLWYP 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6570356.15.5e-5491.27hypothetical protein SDJN03_29271, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022756288.19.1e-3365.79uncharacterized protein LOC111304026 [Durio zibethinus][more]
XP_007014761.11.2e-3265.52PREDICTED: uncharacterized protein LOC18589643 [Theobroma cacao] >EOY32380.1 Unc... [more]
XP_021278994.12.6e-3265.52uncharacterized protein LOC110412707 [Herrania umbratica][more]
XP_012462541.13.8e-3162.93PREDICTED: uncharacterized protein LOC105782384 [Gossypium raimondii] >XP_016734... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KZ559.4e-5287.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G280660 PE=4 SV=1[more]
A0A6P5ZU064.4e-3365.79uncharacterized protein LOC111304026 OS=Durio zibethinus OX=66656 GN=LOC11130402... [more]
A0A061GR995.7e-3365.52Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_040264 PE=4 SV=1[more]
A0A6J0ZX761.3e-3265.52uncharacterized protein LOC110412707 OS=Herrania umbratica OX=108875 GN=LOC11041... [more]
A0A5J5NVD31.8e-3162.93Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A13G234100v1 PE... [more]
Match NameE-valueIdentityDescription
AT5G19875.11.4e-2650.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
AT2G31940.15.5e-2048.60unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembra... [more]
AT5G42146.19.1e-0735.19unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33306:SF24EXPRESSED PROTEINcoord: 1..124
NoneNo IPR availablePANTHERPTHR33306EXPRESSED PROTEIN-RELATED-RELATEDcoord: 1..124

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G023860.2ClCG02G023860.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006979 response to oxidative stress
cellular_component GO:0016021 integral component of membrane