ClCG02G022040 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G022040
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	60S acidic ribosomal protein family
Location	CG_Chr02: 36481355 .. 36482671 (-)
RNA-Seq Expression	ClCG02G022040
Synteny	ClCG02G022040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTTCCCGCGCAATTATACACCTTTTTATTATTTTAGGACGAAAATACCCTCCTCGTCGGGACAGGCGCATGTGAGGCCCATAAACCATTTTCGGCCCACGAAAAGGCCCAAAAACAGAACCCTAATTATAAATAGTTGCATCCGCCATTTTTTGCTTTCATTCTTTGACTGACGGCTCAGATCTCTCTCACTCTTCGTTGCAGCTTCTGTTTTGAACTTTCCCAAGTATTCTCTCTTCTCCCAATCTTGTGTTTTCCATTGATTCTTCTATGTAAGTTCTTCTCATTTCTGGTGTTTAACATTTGATGTTGTGGAAGCAGAGATGAAGGTCGTCGCTGCATATTTGTTGGCCGTTCTCGGTGGCAACACCAACCCCGGACTCGATGATGTGAAGTCTATTCTTAATTCAGGTTCTTATTTCACGAACTATTTGTCTTTTACTTATAGATTTATTTGCTATTCTGGTGGTTTTATTGCTTTCGTAGATAGAGTGGATGTTATAAGGTTTGGGAAATGAGAACGATTGGGCTTTGTTCGATCTGAATGTTTAGGTTAGCCTAGCATTTTCTTTATGATTTAGCTAGGAAGGAGCTGGAAAATAAGTGAAATGTTGAAATGCCTGACCTGAAATGATGGGCGCTGCTAGTGAATTTGCGTTAAGATTTCTGGTGGGGTTTTTATGAACAGTTGGGGCTGAGGTGGATGACGACAGGATTGGCTTGCTACTATCCGAAGTGAAAGGAAAGGATATCACAGAGTTGATAGCCTCCGGACGGGAGAAGTTGGCGTCAGTGCCATCTGGTGGCGGTGCAGTCGCCGTTGCCGCCCCGGCCGGTGGTGCTGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGCAGAAAAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGTAAGTGTTTAACCTGTCATTTCTTAGGCTTTGCCCATTTGGATTTGCTTTGTTGTGTGTAATATGTGAATGACTTGCTCTATGAATAATGTGCCTAAATTTTATGTTCTATCTTTCTGCAGGATATGGGTTTCAGCCTCTTTGACTGAGCAACTCATTTGGTGTCGTTATCAGTTAGTGTTTTAGTTGATTTTCGCTCAAGTTTCCGAGCTTTGGTAGCTTGGTAGGGGTTTTTTCTTTTGACTTATTTAGAACTCAAAAATTTTGATAGATGAAAGTTCAATTTTCAATTTCAATATTTCAGTAATTACTGTCATCTGACTTTGTTTGTGATCTATAATTCCCACTGTTTCTTACCTCATTGTGCATGACTAGTCTTGGCTTATGCTAAT

mRNA sequence

ATGATTTTCCCGCGCAATTATACACCTTTTTATTATTTTAGGACGAAAATACCCTCCTCGTCGGGACAGGCGCATATCTCTCTCACTCTTCGTTGCAGCTTCTGTTTTGAACTTTCCCAAGTCGTCGCTGCATATTTGTTGGCCGTTCTCGGTGGCAACACCAACCCCGGACTCGATGATGTGAAGTCTATTCTTAATTCAGTTGGGGCTGAGGTGGATGACGACAGGATTGGCTTGCTACTATCCGAAGTGAAAGGAAAGGATATCACAGAGTTGATAGCCTCCGGACGGGAGAAGTTGGCGTCAGTGCCATCTGGTGGCGGTGCAGTCGCCGTTGCCGCCCCGGCCGGTGGTGCTGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGCAGAAAAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGATATGGGTTTCAGCCTCTTTGACTGAGCAACTCATTTGGTGTCGTTATCAGTTAGTGTTTTAGTTGATTTTCGCTCAAGTTTCCGAGCTTTGGTAGCTTGGTAGGGGTTTTTTCTTTTGACTTATTTAGAACTCAAAAATTTTGATAGATGAAAGTTCAATTTTCAATTTCAATATTTCAGTAATTACTGTCATCTGACTTTGTTTGTGATCTATAATTCCCACTGTTTCTTACCTCATTGTGCATGACTAGTCTTGGCTTATGCTAAT

Coding sequence (CDS)

ATGATTTTCCCGCGCAATTATACACCTTTTTATTATTTTAGGACGAAAATACCCTCCTCGTCGGGACAGGCGCATATCTCTCTCACTCTTCGTTGCAGCTTCTGTTTTGAACTTTCCCAAGTCGTCGCTGCATATTTGTTGGCCGTTCTCGGTGGCAACACCAACCCCGGACTCGATGATGTGAAGTCTATTCTTAATTCAGTTGGGGCTGAGGTGGATGACGACAGGATTGGCTTGCTACTATCCGAAGTGAAAGGAAAGGATATCACAGAGTTGATAGCCTCCGGACGGGAGAAGTTGGCGTCAGTGCCATCTGGTGGCGGTGCAGTCGCCGTTGCCGCCCCGGCCGGTGGTGCTGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGCAGAAAAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGATATGGGTTTCAGCCTCTTTGACTGA

Protein sequence

MIFPRNYTPFYYFRTKIPSSSGQAHISLTLRCSFCFELSQVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD

Homology

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BLAST of ClCG02G022040 vs. NCBI nr
Match: XP_038901119.1 (60S acidic ribosomal protein P2B-like [Benincasa hispida])

HSP 1 Score: 191.4 bits (485), Expect = 5.6e-45
Identity = 107/114 (93.86%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 40  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREK 99
           +VVAAYLLAVLGGN +PGLDDVKSILNSVGAEVDDDRIGLLLS+VKGKDITELIASGREK
Sbjct: 2   KVVAAYLLAVLGGNPSPGLDDVKSILNSVGAEVDDDRIGLLLSQVKGKDITELIASGREK 61

Query: 100 LASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 154
           LASVPSGGGA+AV+APAGGAAGGGAA AAAEQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 62  LASVPSGGGAIAVSAPAGGAAGGGAALAAAEQKKEEKVEEKEESDDDMGFSLFD 115

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BLAST of ClCG02G022040 vs. NCBI nr
Match: KAG6570492.1 (60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 190.3 bits (482), Expect = 1.3e-44
Identity = 114/155 (73.55%), Postives = 126/155 (81.29%), Query Frame = 0


Query: 1   MIFPRNYTPFYYFR--TKIPSSSGQAHISLTLRCSFCFELSQVVAAYLLAVLGGNTNPGL 60
           ++ PR +  FYY    + +PS    A ++        F   +VVAAYLLAVLGGNT+PGL
Sbjct: 38  LLHPR-HLAFYYLTDGSDLPSLLFAASVT-------SFSKMKVVAAYLLAVLGGNTSPGL 97

Query: 61  DDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVAAPAGG 120
           DDVK ILNSVGAEVD+DRI  LLS+VKGKDITELIASGREKLASVPSGGGAV +AAPAGG
Sbjct: 98  DDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGG 157

Query: 121 AAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 154
           AAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 158 AAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 184

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BLAST of ClCG02G022040 vs. NCBI nr
Match: KAG7010354.1 (60S acidic ribosomal protein P2B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.7 bits (478), Expect = 3.6e-44
Identity = 105/114 (92.11%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 40  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREK 99
           +VVAAYLLAVLGGNT+PGLDDVK ILNSVGAEVD+DRI  LLS+VKGKDITELIASGREK
Sbjct: 2   KVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREK 61

Query: 100 LASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 154
           LASVPSGGGAV +AAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 62  LASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of ClCG02G022040 vs. NCBI nr
Match: XP_022986046.1 (60S acidic ribosomal protein P2B-like [Cucurbita maxima])

HSP 1 Score: 187.2 bits (474), Expect = 1.1e-43
Identity = 104/114 (91.23%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 40  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREK 99
           +VVAAYLLAVLGGNT+PGLDDVK ILNSVGAEVD+DRI  LLS+VKGKDITELIASGREK
Sbjct: 2   KVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREK 61

Query: 100 LASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 154
           LASVPSGGGAV +AAPAGGAAGGGAAPAA EQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 62  LASVPSGGGAVGIAAPAGGAAGGGAAPAAVEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of ClCG02G022040 vs. NCBI nr
Match: XP_022944125.1 (60S acidic ribosomal protein P2B-like [Cucurbita moschata])

HSP 1 Score: 187.2 bits (474), Expect = 1.1e-43
Identity = 104/114 (91.23%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 40  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREK 99
           +VVAAYLLAVLGGNT+PGLDDVK ILNSVGAEVD+DRI  LLS+VKGKDITELIASGREK
Sbjct: 2   KVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREK 61

Query: 100 LASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 154
           LASVPSGGGAV +AAPAGG AGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 62  LASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 115

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BLAST of ClCG02G022040 vs. ExPASy Swiss-Prot
Match: O24415 (60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.0e-33
Identity = 83/114 (72.81%), Postives = 99/114 (86.84%), Query Frame = 0


Query: 40  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREK 99
           +V+AAYLLAVLGGNT+P  DDVKSIL SVGAE D++++  LL+E+K KDITE+IA+GRE+
Sbjct: 2   KVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRER 61

Query: 100 LASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 154
           L+SVPSGGGA+ + APA   AGGGAAP A E KKEEKVEEKEESD+DMGFSLFD
Sbjct: 62  LSSVPSGGGAIDMGAPA-AVAGGGAAP-AEEAKKEEKVEEKEESDEDMGFSLFD 113

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BLAST of ClCG02G022040 vs. ExPASy Swiss-Prot
Match: P46252 (60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3)

HSP 1 Score: 137.9 bits (346), Expect = 9.7e-32
Identity = 83/112 (74.11%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 42  VAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLA 101
           VAAYLLAVL GN +P  DD+ +IL SVG EVD++++ LLLS++ GKDITELIA+GREK A
Sbjct: 4   VAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGREKFA 63

Query: 102 SVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 154
           SVP GGG VAVAA A   A GGAAP AAE KKEEKVEEKEESDDDMGFSLFD
Sbjct: 64  SVPCGGGGVAVAAAA--PAAGGAAP-AAEAKKEEKVEEKEESDDDMGFSLFD 112

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BLAST of ClCG02G022040 vs. ExPASy Swiss-Prot
Match: P41099 (60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 6.3e-31
Identity = 82/114 (71.93%), Postives = 96/114 (84.21%), Query Frame = 0


Query: 40  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREK 99
           +V+AA+LLA+LGGNT+P  +D+KSIL SVGA+ DDD+I LLLS+VKGKDITELIASGRE+
Sbjct: 2   KVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRER 61

Query: 100 LASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 154
           LASVPSGGG VAVAA AGG  G   A AA E KKEEK E  EESD+++GFSLFD
Sbjct: 62  LASVPSGGG-VAVAAAAGGGGGDAPAAAAEEPKKEEKSE--EESDEELGFSLFD 112

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BLAST of ClCG02G022040 vs. ExPASy Swiss-Prot
Match: P51407 (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 SV=2)

HSP 1 Score: 134.4 bits (337), Expect = 1.1e-30
Identity = 81/115 (70.43%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 40  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREK 99
           +VVAA+LLAVL G  +P   D+K IL SVGAE +D +I LLL EVKGKD+ ELIA+GREK
Sbjct: 2   KVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREK 61

Query: 100 LASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 154
           LASVPS GGG VAVA+   G  GGG AP AAE KKEEK EEKEESDDDMGFSLF+
Sbjct: 62  LASVPSGGGGGVAVASATSGGGGGGGAP-AAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of ClCG02G022040 vs. ExPASy Swiss-Prot
Match: Q9SLF7 (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.1e-30
Identity = 81/115 (70.43%), Postives = 92/115 (80.00%), Query Frame = 0


Query: 40  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREK 99
           +VVAAYLLAVL G  +P   D+K+IL SVGAE +D +I LLL EVKGKD+ ELIA+GREK
Sbjct: 2   KVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREK 61

Query: 100 LASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 154
           LASVPS GGG VAVA+   G  GGG A +AAE KKEEK EEKEESDDDMGFSLF+
Sbjct: 62  LASVPSGGGGGVAVASATSGGGGGGGA-SAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of ClCG02G022040 vs. ExPASy TrEMBL
Match: A0A6J1J9Z4 (60S acidic ribosomal protein P2B-like OS=Cucurbita maxima OX=3661 GN=LOC111483902 PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 5.1e-44
Identity = 104/114 (91.23%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 40  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREK 99
           +VVAAYLLAVLGGNT+PGLDDVK ILNSVGAEVD+DRI  LLS+VKGKDITELIASGREK
Sbjct: 2   KVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREK 61

Query: 100 LASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 154
           LASVPSGGGAV +AAPAGGAAGGGAAPAA EQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 62  LASVPSGGGAVGIAAPAGGAAGGGAAPAAVEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of ClCG02G022040 vs. ExPASy TrEMBL
Match: A0A6J1FYH3 (60S acidic ribosomal protein P2B-like OS=Cucurbita moschata OX=3662 GN=LOC111448674 PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 5.1e-44
Identity = 104/114 (91.23%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 40  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREK 99
           +VVAAYLLAVLGGNT+PGLDDVK ILNSVGAEVD+DRI  LLS+VKGKDITELIASGREK
Sbjct: 2   KVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREK 61

Query: 100 LASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 154
           LASVPSGGGAV +AAPAGG AGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 62  LASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of ClCG02G022040 vs. ExPASy TrEMBL
Match: A0A6J1DJB9 (60S acidic ribosomal protein P2B-like OS=Momordica charantia OX=3673 GN=LOC111020580 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 4.3e-43
Identity = 102/114 (89.47%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 40  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREK 99
           +VVAAYLLAVLGGNT+PG DDVK+ILNSVG EVD+DRI  LLS+VKGKDITELIASGREK
Sbjct: 2   KVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGREK 61

Query: 100 LASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 154
           LASVPSGGGAVAVAAPAGGAAGGGAAPAAAE+KKEEKVEEKE+SDDD+GFSLFD
Sbjct: 62  LASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVEEKEDSDDDLGFSLFD 115

[Close]

BLAST of ClCG02G022040 vs. ExPASy TrEMBL
Match: A0A5A7SR49 (60S acidic ribosomal protein P2B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00400 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 9.7e-43
Identity = 100/114 (87.72%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 40  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREK 99
           +VVAAYLLAVLGGNT+PG+DDVK+ILNSVG E+D++RI LLLSEVKGKD+TELIASGREK
Sbjct: 2   KVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGREK 61

Query: 100 LASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 154
           LASVPSGGGA+AV+A AGGAAGGGAAPA AEQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 62  LASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of ClCG02G022040 vs. ExPASy TrEMBL
Match: A0A1S3C8T5 (60S acidic ribosomal protein P2B-like OS=Cucumis melo OX=3656 GN=LOC103497955 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 9.7e-43
Identity = 100/114 (87.72%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 40  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREK 99
           +VVAAYLLAVLGGNT+PG+DDVK+ILNSVG E+D++RI LLLSEVKGKD+TELIASGREK
Sbjct: 2   KVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGREK 61

Query: 100 LASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 154
           LASVPSGGGA+AV+A AGGAAGGGAAPA AEQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 62  LASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of ClCG02G022040 vs. TAIR 10
Match: AT2G27720.1 (60S acidic ribosomal protein family )

HSP 1 Score: 134.4 bits (337), Expect = 7.6e-32
Identity = 81/115 (70.43%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 40  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREK 99
           +VVAA+LLAVL G  +P   D+K IL SVGAE +D +I LLL EVKGKD+ ELIA+GREK
Sbjct: 2   KVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREK 61

Query: 100 LASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 154
           LASVPS GGG VAVA+   G  GGG AP AAE KKEEK EEKEESDDDMGFSLF+
Sbjct: 62  LASVPSGGGGGVAVASATSGGGGGGGAP-AAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of ClCG02G022040 vs. TAIR 10
Match: AT2G27710.1 (60S acidic ribosomal protein family )

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-31
Identity = 81/115 (70.43%), Postives = 92/115 (80.00%), Query Frame = 0


Query: 40  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREK 99
           +VVAAYLLAVL G  +P   D+K+IL SVGAE +D +I LLL EVKGKD+ ELIA+GREK
Sbjct: 2   KVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREK 61

Query: 100 LASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 154
           LASVPS GGG VAVA+   G  GGG A +AAE KKEEK EEKEESDDDMGFSLF+
Sbjct: 62  LASVPSGGGGGVAVASATSGGGGGGGA-SAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of ClCG02G022040 vs. TAIR 10
Match: AT2G27710.2 (60S acidic ribosomal protein family )

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-31
Identity = 81/115 (70.43%), Postives = 92/115 (80.00%), Query Frame = 0


Query: 40  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREK 99
           +VVAAYLLAVL G  +P   D+K+IL SVGAE +D +I LLL EVKGKD+ ELIA+GREK
Sbjct: 2   KVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREK 61

Query: 100 LASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 154
           LASVPS GGG VAVA+   G  GGG A +AAE KKEEK EEKEESDDDMGFSLF+
Sbjct: 62  LASVPSGGGGGVAVASATSGGGGGGGA-SAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of ClCG02G022040 vs. TAIR 10
Match: AT2G27710.3 (60S acidic ribosomal protein family )

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-31
Identity = 81/115 (70.43%), Postives = 92/115 (80.00%), Query Frame = 0


Query: 40  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREK 99
           +VVAAYLLAVL G  +P   D+K+IL SVGAE +D +I LLL EVKGKD+ ELIA+GREK
Sbjct: 2   KVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREK 61

Query: 100 LASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 154
           LASVPS GGG VAVA+   G  GGG A +AAE KKEEK EEKEESDDDMGFSLF+
Sbjct: 62  LASVPSGGGGGVAVASATSGGGGGGGA-SAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of ClCG02G022040 vs. TAIR 10
Match: AT3G44590.2 (60S acidic ribosomal protein family )

HSP 1 Score: 132.1 bits (331), Expect = 3.8e-31
Identity = 78/114 (68.42%), Postives = 89/114 (78.07%), Query Frame = 0


Query: 40  QVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREK 99
           +V AA+LLAVLGGN NP  D++K I+ +VGA+VD + I LLL EV GKDI ELIASGREK
Sbjct: 2   KVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREK 61

Query: 100 LASVPSGGGAVAVAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 154
           LASVPSGGG    AAP+ G  GG AAPA   +KKE K EEKEESDDDMGFSLF+
Sbjct: 62  LASVPSGGGVAVSAAPSSG-GGGAAAPA---EKKEAKKEEKEESDDDMGFSLFE 111

The following BLAST results are available for this feature:

BLAST of ClCG02G022040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901119.1	5.6e-45	93.86	60S acidic ribosomal protein P2B-like [Benincasa hispida]	[more]
KAG6570492.1	1.3e-44	73.55	60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia...	[more]
KAG7010354.1	3.6e-44	92.11	60S acidic ribosomal protein P2B [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022986046.1	1.1e-43	91.23	60S acidic ribosomal protein P2B-like [Cucurbita maxima]	[more]
XP_022944125.1	1.1e-43	91.23	60S acidic ribosomal protein P2B-like [Cucurbita moschata]	[more]

BLAST of ClCG02G022040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24415	1.0e-33	72.81	60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1	[more]
P46252	9.7e-32	74.11	60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3	[more]
P41099	6.3e-31	71.93	60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1	[more]
P51407	1.1e-30	70.43	60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 ...	[more]
Q9SLF7	3.1e-30	70.43	60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 ...	[more]

BLAST of ClCG02G022040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J9Z4	5.1e-44	91.23	60S acidic ribosomal protein P2B-like OS=Cucurbita maxima OX=3661 GN=LOC11148390...	[more]
A0A6J1FYH3	5.1e-44	91.23	60S acidic ribosomal protein P2B-like OS=Cucurbita moschata OX=3662 GN=LOC111448...	[more]
A0A6J1DJB9	4.3e-43	89.47	60S acidic ribosomal protein P2B-like OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A5A7SR49	9.7e-43	87.72	60S acidic ribosomal protein P2B-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3C8T5	9.7e-43	87.72	60S acidic ribosomal protein P2B-like OS=Cucumis melo OX=3656 GN=LOC103497955 PE...	[more]

BLAST of ClCG02G022040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27720.1	7.6e-32	70.43	60S acidic ribosomal protein family	[more]
AT2G27710.1	2.2e-31	70.43	60S acidic ribosomal protein family	[more]
AT2G27710.2	2.2e-31	70.43	60S acidic ribosomal protein family	[more]
AT2G27710.3	2.2e-31	70.43	60S acidic ribosomal protein family	[more]
AT3G44590.2	3.8e-31	68.42	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 40..97 e-value: 5.3E-24 score: 86.1
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 56..152 e-value: 1.1E-25 score: 90.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..153
None	No IPR available	PANTHER	PTHR21141:SF83	60S ACIDIC RIBOSOMAL PROTEIN P2A-LIKE	coord: 24..153
IPR044076	Ribosomal protein P2	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 24..153
IPR044076	Ribosomal protein P2	CDD	cd05833	Ribosomal_P2	coord: 40..153 e-value: 2.32218E-36 score: 119.29
IPR027534	Ribosomal protein L12/P1/P2 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 40..153 score: 16.853519

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G022040.2	ClCG02G022040.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002182	cytoplasmic translational elongation
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome