ClCG02G021145 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G021145
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	TRICHOME BIREFRINGENCE-LIKE 4
Location	CG_Chr02: 35631897 .. 35632254 (+)
RNA-Seq Expression	ClCG02G021145
Synteny	ClCG02G021145

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTAGTTGTATTTAAGACGAATGTAGAGAGGAGAAGGGAAGAGAGAGAAGTATGGAAAATAATAGCATAAAATAAAGATTTTAGTTCTGATTTTCATTTTATTCTCACAGATTAGCATTGAATTTGATGGTTGGGCTTTTTACTAGGCCAGTTGATTTGATCATCCCAATTCACGTAGGCCTAAATATACACATAAGAAAGAGGCTAGTCCAGCAAGTGTTTAAAATGTCATATCAATTGAAACCCCATGAATGTGATATTCCAAGGTTTGATCCAATGGTGTTTCTTCATCTTCTTCGTGGGAAGAAATTCGCATTTACCGGTGATTCTGTTGCTAGAAACCACATTTTGTAA

mRNA sequence

ATGGAATTAGCATTGAATTTGATGGTTGGGCTTTTTACTAGGCCAGTTGATTTGATCATCCCAATTCACGTAGGCCTAAATATACACATAAGAAAGAGGCTAGTCCAGCAAGTGTTTAAAATGTCATATCAATTGAAACCCCATGAATGTGATATTCCAAGGTTTGATCCAATGGTGTTTCTTCATCTTCTTCGTGGGAAGAAATTCGCATTTACCGGTGATTCTGTTGCTAGAAACCACATTTTGTAA

Coding sequence (CDS)

ATGGAATTAGCATTGAATTTGATGGTTGGGCTTTTTACTAGGCCAGTTGATTTGATCATCCCAATTCACGTAGGCCTAAATATACACATAAGAAAGAGGCTAGTCCAGCAAGTGTTTAAAATGTCATATCAATTGAAACCCCATGAATGTGATATTCCAAGGTTTGATCCAATGGTGTTTCTTCATCTTCTTCGTGGGAAGAAATTCGCATTTACCGGTGATTCTGTTGCTAGAAACCACATTTTGTAA

Protein sequence

MELALNLMVGLFTRPVDLIIPIHVGLNIHIRKRLVQQVFKMSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHIL

Homology

[Close]

BLAST of ClCG02G021145 vs. NCBI nr
Match: XP_019427008.1 (PREDICTED: protein ALTERED XYLOGLUCAN 4-like [Lupinus angustifolius])

HSP 1 Score: 72.0 bits (175), Expect = 2.7e-09
Identity = 27/41 (65.85%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 41  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI 82
           ++++ KPHECD+PRFDP +FL+++RGKK AF GDSVARNH+
Sbjct: 138 LNWKWKPHECDLPRFDPTIFLNMVRGKKMAFIGDSVARNHV 178

[Close]

BLAST of ClCG02G021145 vs. NCBI nr
Match: XP_008443481.1 (PREDICTED: protein ALTERED XYLOGLUCAN 4-like [Cucumis melo] >KAA0053698.1 protein ALTERED XYLOGLUCAN 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 3.5e-09
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 41  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI 82
           ++++ KP EC++PRFDPM FLHLLRGKK AF GDSVARNH+
Sbjct: 128 VNWRWKPDECELPRFDPMAFLHLLRGKKLAFIGDSVARNHM 168

[Close]

BLAST of ClCG02G021145 vs. NCBI nr
Match: KAE8651242.1 (hypothetical protein Csa_000903 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 3.5e-09
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 41  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI 82
           ++++ KP EC++PRFDPM FLHLLRGKK AF GDSVARNH+
Sbjct: 167 VNWRWKPDECELPRFDPMAFLHLLRGKKLAFIGDSVARNHM 207

[Close]

BLAST of ClCG02G021145 vs. NCBI nr
Match: XP_004147443.2 (protein ALTERED XYLOGLUCAN 4-like [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 3.5e-09
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 41  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI 82
           ++++ KP EC++PRFDPM FLHLLRGKK AF GDSVARNH+
Sbjct: 152 VNWRWKPDECELPRFDPMAFLHLLRGKKLAFIGDSVARNHM 192

[Close]

BLAST of ClCG02G021145 vs. NCBI nr
Match: KAE9620056.1 (putative PMR5 domain, PC-Esterase, trichome birefringence-like family [Lupinus albus] >KAF1877552.1 hypothetical protein Lal_00040268 [Lupinus albus])

HSP 1 Score: 70.9 bits (172), Expect = 5.9e-09
Identity = 27/41 (65.85%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 41  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI 82
           ++++ KPHECD+PRFDP +FL ++RGKK AF GDSVARNH+
Sbjct: 142 LNWKWKPHECDLPRFDPSIFLTMVRGKKMAFIGDSVARNHV 182

[Close]

BLAST of ClCG02G021145 vs. ExPASy Swiss-Prot
Match: Q9M896 (Protein trichome birefringence-like 20 OS=Arabidopsis thaliana OX=3702 GN=TBL20 PE=2 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-08
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 41  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI 82
           M ++ KP ECD+P FDP  FL ++RG + AF GDSV+RNH+
Sbjct: 168 MKWRWKPKECDLPLFDPYEFLEIVRGTRMAFVGDSVSRNHV 208

[Close]

BLAST of ClCG02G021145 vs. ExPASy Swiss-Prot
Match: Q8H1R3 (Protein trichome birefringence-like 24 OS=Arabidopsis thaliana OX=3702 GN=TBL24 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.2e-08
Identity = 22/39 (56.41%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 43  YQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI 82
           ++ KPH+C +PRFDP  FL L+R K +AF GDS++RNH+
Sbjct: 123 WKWKPHDCLLPRFDPRRFLQLMRHKSWAFIGDSISRNHV 161

[Close]

BLAST of ClCG02G021145 vs. ExPASy Swiss-Prot
Match: Q9LRS2 (Protein ALTERED XYLOGLUCAN 4-like OS=Arabidopsis thaliana OX=3702 GN=AXY4L PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.8e-08
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 43  YQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI 82
           ++ KP  CD+PRF+P  FL ++RGKK  F GDSVARNH+
Sbjct: 113 WRWKPDGCDLPRFNPKAFLSMVRGKKMNFIGDSVARNHM 151

[Close]

BLAST of ClCG02G021145 vs. ExPASy Swiss-Prot
Match: Q9FHM0 (Protein YLS7 OS=Arabidopsis thaliana OX=3702 GN=YLS7 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-07
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 42  SYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI 82
           +++ KP +CD+PRFD   FL L+RGK  AF GDSVARN +
Sbjct: 180 NWRWKPSQCDLPRFDAKKFLELMRGKTLAFIGDSVARNQM 219

[Close]

BLAST of ClCG02G021145 vs. ExPASy Swiss-Prot
Match: O82509 (Protein trichome birefringence-like 23 OS=Arabidopsis thaliana OX=3702 GN=TBL23 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.6e-07
Identity = 20/41 (48.78%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 41  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI 82
           ++++ KP++C +PRFD + FL L+R K +A  GDS+ARNH+
Sbjct: 121 LNWKWKPNDCSLPRFDSLRFLQLMRNKSWAIIGDSIARNHV 161

[Close]

BLAST of ClCG02G021145 vs. ExPASy TrEMBL
Match: A0A5A7UF32 (Protein ALTERED XYLOGLUCAN 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G00720 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 41  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI 82
           ++++ KP EC++PRFDPM FLHLLRGKK AF GDSVARNH+
Sbjct: 128 VNWRWKPDECELPRFDPMAFLHLLRGKKLAFIGDSVARNHM 168

[Close]

BLAST of ClCG02G021145 vs. ExPASy TrEMBL
Match: A0A0A0LFF0 (PMR5N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G829240 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 41  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI 82
           ++++ KP EC++PRFDPM FLHLLRGKK AF GDSVARNH+
Sbjct: 126 VNWRWKPDECELPRFDPMAFLHLLRGKKLAFIGDSVARNHM 166

[Close]

BLAST of ClCG02G021145 vs. ExPASy TrEMBL
Match: A0A1S3B8W3 (protein ALTERED XYLOGLUCAN 4-like OS=Cucumis melo OX=3656 GN=LOC103487062 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 41  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI 82
           ++++ KP EC++PRFDPM FLHLLRGKK AF GDSVARNH+
Sbjct: 128 VNWRWKPDECELPRFDPMAFLHLLRGKKLAFIGDSVARNHM 168

[Close]

BLAST of ClCG02G021145 vs. ExPASy TrEMBL
Match: A0A6A5N3E5 (Putative PMR5 domain, PC-Esterase, trichome birefringence-like family OS=Lupinus albus OX=3870 GN=Lal_00040268 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.9e-09
Identity = 27/41 (65.85%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 41  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI 82
           ++++ KPHECD+PRFDP +FL ++RGKK AF GDSVARNH+
Sbjct: 142 LNWKWKPHECDLPRFDPSIFLTMVRGKKMAFIGDSVARNHV 182

[Close]

BLAST of ClCG02G021145 vs. ExPASy TrEMBL
Match: I1LWD8 (PMR5N domain-containing protein OS=Glycine max OX=3847 GN=100806002 PE=3 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 8.4e-09
Identity = 26/41 (63.41%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 41  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI 82
           ++++ KP +CD+PRFDP  FLH++RGKK AF GDSVARNH+
Sbjct: 145 LNWKWKPEQCDLPRFDPRTFLHMVRGKKMAFIGDSVARNHV 185

[Close]

BLAST of ClCG02G021145 vs. TAIR 10
Match: AT3G02440.1 (TRICHOME BIREFRINGENCE-LIKE 20 )

HSP 1 Score: 60.1 bits (144), Expect = 9.8e-10
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 41  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI 82
           M ++ KP ECD+P FDP  FL ++RG + AF GDSV+RNH+
Sbjct: 168 MKWRWKPKECDLPLFDPYEFLEIVRGTRMAFVGDSVSRNHV 208

[Close]

BLAST of ClCG02G021145 vs. TAIR 10
Match: AT4G23790.1 (TRICHOME BIREFRINGENCE-LIKE 24 )

HSP 1 Score: 58.2 bits (139), Expect = 3.7e-09
Identity = 22/39 (56.41%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 43  YQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI 82
           ++ KPH+C +PRFDP  FL L+R K +AF GDS++RNH+
Sbjct: 123 WKWKPHDCLLPRFDPRRFLQLMRHKSWAFIGDSISRNHV 161

[Close]

BLAST of ClCG02G021145 vs. TAIR 10
Match: AT3G28150.1 (TRICHOME BIREFRINGENCE-LIKE 22 )

HSP 1 Score: 57.8 bits (138), Expect = 4.8e-09
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 43  YQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI 82
           ++ KP  CD+PRF+P  FL ++RGKK  F GDSVARNH+
Sbjct: 113 WRWKPDGCDLPRFNPKAFLSMVRGKKMNFIGDSVARNHM 151

[Close]

BLAST of ClCG02G021145 vs. TAIR 10
Match: AT5G51640.1 (Plant protein of unknown function (DUF828) )

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-08
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 42  SYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI 82
           +++ KP +CD+PRFD   FL L+RGK  AF GDSVARN +
Sbjct: 180 NWRWKPSQCDLPRFDAKKFLELMRGKTLAFIGDSVARNQM 219

[Close]

BLAST of ClCG02G021145 vs. TAIR 10
Match: AT4G11090.1 (TRICHOME BIREFRINGENCE-LIKE 23 )

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-08
Identity = 20/41 (48.78%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 41  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI 82
           ++++ KP++C +PRFD + FL L+R K +A  GDS+ARNH+
Sbjct: 121 LNWKWKPNDCSLPRFDSLRFLQLMRNKSWAIIGDSIARNHV 161

The following BLAST results are available for this feature:

BLAST of ClCG02G021145 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_019427008.1	2.7e-09	65.85	PREDICTED: protein ALTERED XYLOGLUCAN 4-like [Lupinus angustifolius]	[more]
XP_008443481.1	3.5e-09	70.73	PREDICTED: protein ALTERED XYLOGLUCAN 4-like [Cucumis melo] >KAA0053698.1 protei...	[more]
KAE8651242.1	3.5e-09	70.73	hypothetical protein Csa_000903 [Cucumis sativus]	[more]
XP_004147443.2	3.5e-09	70.73	protein ALTERED XYLOGLUCAN 4-like [Cucumis sativus]	[more]
KAE9620056.1	5.9e-09	65.85	putative PMR5 domain, PC-Esterase, trichome birefringence-like family [Lupinus a...	[more]

BLAST of ClCG02G021145 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M896	1.4e-08	56.10	Protein trichome birefringence-like 20 OS=Arabidopsis thaliana OX=3702 GN=TBL20 ...	[more]
Q8H1R3	5.2e-08	56.41	Protein trichome birefringence-like 24 OS=Arabidopsis thaliana OX=3702 GN=TBL24 ...	[more]
Q9LRS2	6.8e-08	58.97	Protein ALTERED XYLOGLUCAN 4-like OS=Arabidopsis thaliana OX=3702 GN=AXY4L PE=2 ...	[more]
Q9FHM0	2.0e-07	57.50	Protein YLS7 OS=Arabidopsis thaliana OX=3702 GN=YLS7 PE=2 SV=1	[more]
O82509	2.6e-07	48.78	Protein trichome birefringence-like 23 OS=Arabidopsis thaliana OX=3702 GN=TBL23 ...	[more]

BLAST of ClCG02G021145 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UF32	1.7e-09	70.73	Protein ALTERED XYLOGLUCAN 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A0A0LFF0	1.7e-09	70.73	PMR5N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G829240 PE=3 ...	[more]
A0A1S3B8W3	1.7e-09	70.73	protein ALTERED XYLOGLUCAN 4-like OS=Cucumis melo OX=3656 GN=LOC103487062 PE=3 S...	[more]
A0A6A5N3E5	2.9e-09	65.85	Putative PMR5 domain, PC-Esterase, trichome birefringence-like family OS=Lupinus...	[more]
I1LWD8	8.4e-09	63.41	PMR5N domain-containing protein OS=Glycine max OX=3847 GN=100806002 PE=3 SV=2	[more]

BLAST of ClCG02G021145 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02440.1	9.8e-10	56.10	TRICHOME BIREFRINGENCE-LIKE 20	[more]
AT4G23790.1	3.7e-09	56.41	TRICHOME BIREFRINGENCE-LIKE 24	[more]
AT3G28150.1	4.8e-09	58.97	TRICHOME BIREFRINGENCE-LIKE 22	[more]
AT5G51640.1	1.4e-08	57.50	Plant protein of unknown function (DUF828)	[more]
AT4G11090.1	1.8e-08	48.78	TRICHOME BIREFRINGENCE-LIKE 23	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026057	PC-Esterase	PFAM	PF13839	PC-Esterase	coord: 52..81 e-value: 3.9E-8 score: 33.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G021145.1	ClCG02G021145.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010411	xyloglucan metabolic process
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016413	O-acetyltransferase activity