ClCG02G020860 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G020860
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	40S ribosomal protein S23
Location	CG_Chr02: 35385886 .. 35389969 (-)
RNA-Seq Expression	ClCG02G020860
Synteny	ClCG02G020860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCAAGACAAGGAGGCAGAGTCTAGTTTAACATATCAAACGCTGCAACACCAGGAACTACTGAGAAATGACGTCTGCTTCGATGGAGGCGATTGTGGGATAATATCGCTAGGAGGATGATCATCTCCATTCTTGTATTATCAATGTTACTACAATCAAGAAGTCAATGATTCAAATCCTCCACTCCAAATGTTGTTGTAAACTCAAAAGGAAGAAATTTGTTGTATTATCAATGCTAACCAACAATATTTCTTGGCCACTCGAATGAGCTGTAGTCAGTTTAGATTTTATTTATCAGGCGAGATGTCATTTTATCTTCTTTGGAACATCATTTTGTTGTGCTGAACTAGAAGAAAAATTTGTTGCTAAAAGCATGGTAAGGAGCTAAACAAAGAACTTCACTCGGTATGGACTTGAGAGATGCAAGATTCTTGGCCTCTCTATTCAACAATCGAATAGGCTTTACACTATCTGACTGAACAATTATTGTAAGCGGATTGGTTGTTGAAACCATTCTAATTACTTCCAGGATTGCGGTCGTCTTTAGCAACAGAACATTGTATAATTCTTGTATTTTGAAAGATATGTGTTTAATACTTCAGTTTATTATACATATGGATGGTTCTTATTGATTCGGGTTTCTCTTTTTTAAGGTTGGTTATGGTAGCACCGGTTTTTCTACACCAGTTTTTGTTTAAAAGAAAGTTCTTCTACACCATTTGATATCACAATTTAAATTTTGTATGAAACTTATAGCTAAAAAAGAGGAAATTATCTTAAATGACAAAGTTGCTGAACATATTTATAATTAATAGCAAAATATACTGTTTATCTGAGATAAACTGCGATAGTCTATATTTGTAAAACTGTATAAGGGTTGAGATAGAAAAACTGAAAAAAGACGATGAAATCTAAAACAATTTTTTTATTTATTAAAATCTAAATTGAAAAAACAAATCTAATTGTTGTATTCAACTGAAATAGTTCGTTCAATTTTTTTTTCTAAAGAAATTTGTTATTTATTTGTCATCAAGTTTAGGGACAAATAAATTTCTTCCATCATTAAGTCATATTTTTTTAAAGAACAAAGTCATAATTTAATTTGATAAACAATTTTAGAAACAAATTGACTAACTAGCTACTAGCATATAACTAAGGTAAAAAGTGATTTAATTAACTTGCAACTTGTAACAATAAACCTTAAAAAGAAAAAAACAAAAAAAAAAACAAATAAATAAAGTTAAATTTCAAGTTTGCTTCATAGGTTGGGGAAAAGTTGGAATTTAGTGTTTATGGTTTCAAAGGCTAGGATTTATTCATATTGTTCTTAAAAACTCATAAACCATCTATGATTTGTAAAACCTATTATTAAATCATAGGACTGAGTCTTAATTATAAATCATAAAAGACTAAATTTTGACTTCTCTTCAAGATAAAAATTGCATTATAACAAACAAAGTGTGAGTTAATCATAATTGACATAACCTTTCTTACTATTAAGGTGAGCAAAAAAAACCCGCAGGGCTCTATCGGGTTGGGAATCCCCAGTTTGACCGAGGACAGTCTCGCTCTCTCACACTCTCACTCTCTCAGGCTCAAACCCTACCAAATCCTAATTACACTCGCTCTCGCGGTCTCACTCGCTTGCTCTCGGAGAGATTAACTGGAAATGGGTCCCTGACGAAGATGAGGTAAATTCCCCGTTGCCAACCCTAATTACTATGGTTGTATATTTATTTATTACTATTATTATCATCATTGTTTTGCAATGTAACATATATTAAAAATTTCCAATAGACTCACTTATAAATAAAAAAATAAATATAAAAGCAAATTTCGAAAGAGGGCGTTGCCAAGGTGGCAAATCAGTGGTATTTCAACTCAACCCTACAGTATAAAAAGGGACCAAGGAGTCTAGGGTTTCATTTACACACGGTGCGGCAGCGTCATCCGAAGTAGCTTCCTCTCTGCCGGTTCCGGAGCTCTGCTACCTCAATCTAGCACTCGGAGATCCTTTTTTCACACTAACCATGGGGTATGTTCTTCTTCCATCTTTCTGTTTTGTTGCTCTGAATTGTTTATAGAGATGAAATAAATGTTTTAGGGAAAGGAGTACACAATATAGTCGAGATTTGAATAGCTTAACTGGATCATACGTGTTTGAAAGATCGAGAATCCAGTAGTTACTTTAGAGACGGGAATGGTTAATATTAGCTTTTCGTAGATTTTAGAATATGTTGAACGGCACAGCAATGGTTAGGAAAGATGATGCGCTGTCTAGTTGCTGTGCTATCAATCCGAAGTTTTGTTTTTCTTTTGTGTGTGTTTTGTTATTGTCATTGGTTATTGCAATAACGCGATCTTTTGATTAGTTTTGTGTCAGATAATCGTGGATTTATTTCGTTTTTCATTCGAATTTCTTTATTGTTTGGCTACTATCGTTCCTAGATATAGGAATTACAGTCATTGAAGCTGTTAAGCTTCTAGATATGACCGTGGACTTCAGTTTTAATGGGAGCAAGTTGGTGGTTATGATTTTAGGCTGATTTAACAAATTTCTACAACAATAATTCTATTTTGCTTGTTTGACTCAGAAACAATTGAGGTTGTTTCTTTACCACTCAAAAAGTAGCCTTGCTTAGTTCAAAGATTCTCGATGGTATGAGTATCCCTGTGACTTAGAGAATTCGATTGGTGCAAAACTAGGTCCTTTTTGCATGTCACAGGTTTAATTGTAACGTTTTAGAGGTCAATACTTCTCAAACTTCCGAATGTTTTATTAGTTAATAGGCTTAAATTGAGAGGAAAAATTGACGATGCTTTAAGGGAACTGGGAAAAGGTCCATGTTTCTATGTTTTATGTTTTGATACAAATAGGCAGTTATATTCTCTTTCGTAAGTGGTAGTAATATCTTACAGGAAGACAAGGGGAATGGGAGCTGGTCGCAAGTTGAAGTCCCACCGTAGAAGACAAAGGTGGGCTGACAAGTCATACAAGAAATCCCATCTTGGAAACGAGTGGAAGAAACCCTTTGCTGGATCTTCCCATGCAAAAGGCATTGTTCTAGAAAAGATGTAAGATAATTTTATTTCTGATGTTCTTTTCTGAGGCCTACTTAGCAAAAACCTATTGGATAATATTTTCTGGTGCATTGTGCAGTGGTATTGAGGCTAAGCAGCCTAACTCCGCTATCAGAAAGTGTGCTAGAGTTCAGCTTATTAAGAATGGGAAGAAGATTGCTGCCTTCGTCCCAAATGATGGTTGTCTTAATTACATTGAAGAAAATGTAAGTATTTGAGGGAAGCTTGGGATTTGATCACAGGGATATCAGTTACTATTATTCTTTATTTTTTCTATAATGTATGTATTGGTATGAACAGGACGAGGTTCTCATTGCTGGATTTGGTCGAAAAGGACATGCTGTTGGTGATATTCCCGGAGTCAGATTTAAGGTTGTGAAGGTGTCAGGTGTATCTCTGTTGGCTCTCTTCAAGGAAAAGAAGGAGAAGCCAAGGTCTTAAGCTTCTCGGTTTTCCAAGATAGATTGTGTCTCTATTTTGTTCAATTCTCGTCCGAGGATGAACAATTGATGCTCGCTCTCCCCTTTGTCACTAGTTAAGTTAGATTACTCGGTCAGCAGATAGAAACTTATGCACGCAACCCTTTTGTTGAGACTTGATAAAGCATAATTTTCTTTGCAATCAGAACAGATTTTGTTATGGTTAATTTGAGTGTAATACATGCCCTTCCCTTTCCTATCAAAATGTCAGGAAGTTTTGTTTTGGAATGATTCTGTTGATTCTATTGTGAATGAATGTCCAGCCTTTTCACTTCTATGTTCAATTTTCAGCAAGGAATTATGAAGCTTTAAGAACTATTATATGCTTGTCGACCCTTCTTTTATTTACAGAATCATCAAGTCGATCATTAAAGAATATTATCAATCAATCAATGAAGCTTTGATCTTGTGCTTTTGTACATCCTGAAATGGATTGCTGTCTTGTATCGTTCTTGTCTTTCCTGATCCACAGATATATTATGGTTGCTTGCTCAAGGACATGGTTCCAGGCTTGGACTTAA

mRNA sequence

ATGGTGCAAGACAAGGAGGCAGAGTCTAGTTTAACATATCAAACGCTGCAACACCAGGAACTACTGAGAAATGACGTCTGCTTCGATGGAGGCGATTCGTCATCCGAAGTAGCTTCCTCTCTGCCGGTTCCGGAGCTCTGCTACCTCAATCTAGCACTCGGAGATCCTTTTTTCACACTAACCATGGGGAAGACAAGGGGAATGGGAGCTGGTCGCAAGTTGAAGTCCCACCGTAGAAGACAAAGGTGGGCTGACAAGTCATACAAGAAATCCCATCTTGGAAACGAGTGGAAGAAACCCTTTGCTGGATCTTCCCATGCAAAAGGCATTGTTCTAGAAAAGATTGGTATTGAGGCTAAGCAGCCTAACTCCGCTATCAGAAAGTGTGCTAGAGTTCAGCTTATTAAGAATGGGAAGAAGATTGCTGCCTTCGTCCCAAATGATGGTTGTCTTAATTACATTGAAGAAAATGACGAGGTTCTCATTGCTGGATTTGGTCGAAAAGGACATGCTGTTGGTGATATTCCCGGAGTCAGATTTAAGGTTGTGAAGGTGTCAGGTGTATCTCTGTTGGCTCTCTTCAAGGAAAAGAAGGAGAAGCCAAGATATATTATGGTTGCTTGCTCAAGGACATGGTTCCAGGCTTGGACTTAA

Coding sequence (CDS)

ATGGTGCAAGACAAGGAGGCAGAGTCTAGTTTAACATATCAAACGCTGCAACACCAGGAACTACTGAGAAATGACGTCTGCTTCGATGGAGGCGATTCGTCATCCGAAGTAGCTTCCTCTCTGCCGGTTCCGGAGCTCTGCTACCTCAATCTAGCACTCGGAGATCCTTTTTTCACACTAACCATGGGGAAGACAAGGGGAATGGGAGCTGGTCGCAAGTTGAAGTCCCACCGTAGAAGACAAAGGTGGGCTGACAAGTCATACAAGAAATCCCATCTTGGAAACGAGTGGAAGAAACCCTTTGCTGGATCTTCCCATGCAAAAGGCATTGTTCTAGAAAAGATTGGTATTGAGGCTAAGCAGCCTAACTCCGCTATCAGAAAGTGTGCTAGAGTTCAGCTTATTAAGAATGGGAAGAAGATTGCTGCCTTCGTCCCAAATGATGGTTGTCTTAATTACATTGAAGAAAATGACGAGGTTCTCATTGCTGGATTTGGTCGAAAAGGACATGCTGTTGGTGATATTCCCGGAGTCAGATTTAAGGTTGTGAAGGTGTCAGGTGTATCTCTGTTGGCTCTCTTCAAGGAAAAGAAGGAGAAGCCAAGATATATTATGGTTGCTTGCTCAAGGACATGGTTCCAGGCTTGGACTTAA

Protein sequence

MVQDKEAESSLTYQTLQHQELLRNDVCFDGGDSSSEVASSLPVPELCYLNLALGDPFFTLTMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRYIMVACSRTWFQAWT

Homology

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BLAST of ClCG02G020860 vs. NCBI nr
Match: KAG6570758.1 (40S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 293.9 bits (751), Expect = 1.1e-75
Identity = 145/151 (96.03%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 53  LGDPFFTLTMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVL 112
           L DP   LTMGKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVL
Sbjct: 35  LEDPLLALTMGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVL 94

Query: 113 EKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAV 172
           EKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAV
Sbjct: 95  EKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAV 154

Query: 173 GDIPGVRFKVVKVSGVSLLALFKEKKEKPRY 204
           GDIPGVRFKVVKVSGVSLLALFKEKKEKPR+
Sbjct: 155 GDIPGVRFKVVKVSGVSLLALFKEKKEKPRH 185

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BLAST of ClCG02G020860 vs. NCBI nr
Match: KAG6580588.1 (40S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 290.4 bits (742), Expect = 1.3e-74
Identity = 148/180 (82.22%), Postives = 155/180 (86.11%), Query Frame = 0


Query: 25  DVCFDGGDSSSEVASSLPVPELCY--LNLALGDPFFTLTMGKTRGMGAGRKLKSHRRRQR 84
           D+ F   D    +   LP+P +        + +P  +  MGKTRGMGAGRKLKSHRRRQR
Sbjct: 377 DIDFSCMDDDLSLLDDLPLPWVLVPAPPSTVEEPVVSANMGKTRGMGAGRKLKSHRRRQR 436

Query: 85  WADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIA 144
           WADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIA
Sbjct: 437 WADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIA 496

Query: 145 AFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 203
           AFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR
Sbjct: 497 AFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 556

[Close]

BLAST of ClCG02G020860 vs. NCBI nr
Match: KAF3946178.1 (hypothetical protein CMV_027526, partial [Castanea mollissima])

HSP 1 Score: 290.4 bits (742), Expect = 1.3e-74
Identity = 143/148 (96.62%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 55  DPFFTLTMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEK 114
           + F ++TMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEK
Sbjct: 17  EQFLSVTMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEK 76

Query: 115 IGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 174
           IGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD
Sbjct: 77  IGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 136

Query: 175 IPGVRFKVVKVSGVSLLALFKEKKEKPR 203
           IPGVRFKVVKVSGVSLLALFKEKKEKPR
Sbjct: 137 IPGVRFKVVKVSGVSLLALFKEKKEKPR 164

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BLAST of ClCG02G020860 vs. NCBI nr
Match: OVA09919.1 (Ribosomal protein S12/S23 [Macleaya cordata])

HSP 1 Score: 289.3 bits (739), Expect = 2.8e-74
Identity = 144/154 (93.51%), Postives = 147/154 (95.45%), Query Frame = 0


Query: 49  LNLALGDPFFTLTMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAK 108
           L  A+ +   T+ MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAK
Sbjct: 637 LAFAVEEHLLTVIMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAK 696

Query: 109 GIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRK 168
           GIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRK
Sbjct: 697 GIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRK 756

Query: 169 GHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 203
           GHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR
Sbjct: 757 GHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 790

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BLAST of ClCG02G020860 vs. NCBI nr
Match: CDP06706.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 288.5 bits (737), Expect = 4.8e-74
Identity = 148/173 (85.55%), Postives = 151/173 (87.28%), Query Frame = 0


Query: 30  GGDSSSEVASSLPVPELCYLNLALGDPFFTLTMGKTRGMGAGRKLKSHRRRQRWADKSYK 89
           GGD  S     L      + +L+      T  MGKTRGMGAGRKLKSHRRRQRWADKSYK
Sbjct: 10  GGDFKSIGREGLGYQPKPHPSLSSRKSRLTAIMGKTRGMGAGRKLKSHRRRQRWADKSYK 69

Query: 90  KSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDG 149
           KSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDG
Sbjct: 70  KSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDG 129

Query: 150 CLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 203
           CLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR
Sbjct: 130 CLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 182

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BLAST of ClCG02G020860 vs. ExPASy Swiss-Prot
Match: P46297 (40S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 1.0e-74
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 62  MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 121
           MGKTRGMGA RKLK+HRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 122 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 181
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 182 VVKVSGVSLLALFKEKKEKPR 203
           VVKVSGVSLLALFKEKKEKPR
Sbjct: 121 VVKVSGVSLLALFKEKKEKPR 141

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BLAST of ClCG02G020860 vs. ExPASy Swiss-Prot
Match: Q9M5Z9 (40S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 8.5e-74
Identity = 138/141 (97.87%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 62  MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 121
           MGKT GMGA RKLKSHRR QRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 122 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 181
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 182 VVKVSGVSLLALFKEKKEKPR 203
           VVKVSGVSLLALFKEKKEKPR
Sbjct: 121 VVKVSGVSLLALFKEKKEKPR 141

[Close]

BLAST of ClCG02G020860 vs. ExPASy Swiss-Prot
Match: P49201 (40S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2)

HSP 1 Score: 271.9 bits (694), Expect = 6.1e-72
Identity = 136/141 (96.45%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 62  MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 121
           MGKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 122 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 181
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 182 VVKVSGVSLLALFKEKKEKPR 203
           VVKVSGVSLLALFKEKKEKPR
Sbjct: 121 VVKVSGVSLLALFKEKKEKPR 141

[Close]

BLAST of ClCG02G020860 vs. ExPASy Swiss-Prot
Match: Q9SF35 (40S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2)

HSP 1 Score: 263.1 bits (671), Expect = 2.8e-69
Identity = 133/141 (94.33%), Postives = 134/141 (95.04%), Query Frame = 0


Query: 62  MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 121
           MGKTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQ 60

Query: 122 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 181
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 182 VVKVSGVSLLALFKEKKEKPR 203
           VVKVSGVSLLALFKEKKEKPR
Sbjct: 121 VVKVSGVSLLALFKEKKEKPR 141

[Close]

BLAST of ClCG02G020860 vs. ExPASy Swiss-Prot
Match: Q9GRJ3 (40S ribosomal protein S23 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 5.7e-62
Identity = 115/142 (80.99%), Postives = 126/142 (88.73%), Query Frame = 0


Query: 62  MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 121
           MGK RG+   RKLK+HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAK 60

Query: 122 QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 181
           QPNSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120

Query: 182 KVVKVSGVSLLALFKEKKEKPR 203
           KVVKV+ VSLLAL+K+KKE+PR
Sbjct: 121 KVVKVASVSLLALYKQKKERPR 142

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BLAST of ClCG02G020860 vs. ExPASy TrEMBL
Match: A0A200QHJ3 (Ribosomal protein S12/S23 OS=Macleaya cordata OX=56857 GN=BVC80_1751g75 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.4e-74
Identity = 144/154 (93.51%), Postives = 147/154 (95.45%), Query Frame = 0


Query: 49  LNLALGDPFFTLTMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAK 108
           L  A+ +   T+ MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAK
Sbjct: 637 LAFAVEEHLLTVIMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAK 696

Query: 109 GIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRK 168
           GIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRK
Sbjct: 697 GIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRK 756

Query: 169 GHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 203
           GHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR
Sbjct: 757 GHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 790

[Close]

BLAST of ClCG02G020860 vs. ExPASy TrEMBL
Match: A0A068UE32 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00023642001 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.3e-74
Identity = 148/173 (85.55%), Postives = 151/173 (87.28%), Query Frame = 0


Query: 30  GGDSSSEVASSLPVPELCYLNLALGDPFFTLTMGKTRGMGAGRKLKSHRRRQRWADKSYK 89
           GGD  S     L      + +L+      T  MGKTRGMGAGRKLKSHRRRQRWADKSYK
Sbjct: 10  GGDFKSIGREGLGYQPKPHPSLSSRKSRLTAIMGKTRGMGAGRKLKSHRRRQRWADKSYK 69

Query: 90  KSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDG 149
           KSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDG
Sbjct: 70  KSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDG 129

Query: 150 CLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 203
           CLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR
Sbjct: 130 CLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 182

[Close]

BLAST of ClCG02G020860 vs. ExPASy TrEMBL
Match: A0A2G5D591 (Uncharacterized protein (Fragment) OS=Aquilegia coerulea OX=218851 GN=AQUCO_02700115v1 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 8.8e-74
Identity = 142/144 (98.61%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 59  TLTMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIE 118
           T+ MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIE
Sbjct: 32  TVIMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIE 91

Query: 119 AKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGV 178
           AKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGV
Sbjct: 92  AKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGV 151

Query: 179 RFKVVKVSGVSLLALFKEKKEKPR 203
           RFKVVKVSGVSLLALFKEKKEKPR
Sbjct: 152 RFKVVKVSGVSLLALFKEKKEKPR 175

[Close]

BLAST of ClCG02G020860 vs. ExPASy TrEMBL
Match: A0A4Y7LBJ4 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_045662 PE=3 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.5e-73
Identity = 142/149 (95.30%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 62  MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 121
           MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 122 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 181
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 182 VVKVSGVSLLALFKEKKEKPRYIMVACSR 211
           VVKVSGVSLLALFKEKKEKPR +  A  +
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRMMASAAEK 149

[Close]

BLAST of ClCG02G020860 vs. ExPASy TrEMBL
Match: A0A5B6Z065 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_006978 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 2.6e-73
Identity = 141/148 (95.27%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 55  DPFFTLTMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEK 114
           +P  + TMGKTRGMGAGRKLKSHRRRQRWADK+YKKS+LGNEWKKPFAGSSHAKGIVLEK
Sbjct: 25  EPPLSATMGKTRGMGAGRKLKSHRRRQRWADKAYKKSNLGNEWKKPFAGSSHAKGIVLEK 84

Query: 115 IGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 174
           IGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD
Sbjct: 85  IGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 144

Query: 175 IPGVRFKVVKVSGVSLLALFKEKKEKPR 203
           IPGVRFKVVKVSGVSLLALFKEKKEKPR
Sbjct: 145 IPGVRFKVVKVSGVSLLALFKEKKEKPR 172

[Close]

BLAST of ClCG02G020860 vs. TAIR 10
Match: AT5G02960.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 271.9 bits (694), Expect = 4.3e-73
Identity = 136/141 (96.45%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 62  MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 121
           MGKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 122 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 181
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 182 VVKVSGVSLLALFKEKKEKPR 203
           VVKVSGVSLLALFKEKKEKPR
Sbjct: 121 VVKVSGVSLLALFKEKKEKPR 141

[Close]

BLAST of ClCG02G020860 vs. TAIR 10
Match: AT3G09680.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 263.1 bits (671), Expect = 2.0e-70
Identity = 133/141 (94.33%), Postives = 134/141 (95.04%), Query Frame = 0


Query: 62  MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 121
           MGKTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQ 60

Query: 122 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 181
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 182 VVKVSGVSLLALFKEKKEKPR 203
           VVKVSGVSLLALFKEKKEKPR
Sbjct: 121 VVKVSGVSLLALFKEKKEKPR 141

[Close]

BLAST of ClCG02G020860 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 48.9 bits (115), Expect = 6.0e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 95  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 154
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 155 IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 185
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]

BLAST of ClCG02G020860 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 48.9 bits (115), Expect = 6.0e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 95  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 154
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 155 IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 185
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]

BLAST of ClCG02G020860 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 48.9 bits (115), Expect = 6.0e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 95  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 154
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 155 IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 185
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

The following BLAST results are available for this feature:

BLAST of ClCG02G020860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570758.1	1.1e-75	96.03	40S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6580588.1	1.3e-74	82.22	40S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAF3946178.1	1.3e-74	96.62	hypothetical protein CMV_027526, partial [Castanea mollissima]	[more]
OVA09919.1	2.8e-74	93.51	Ribosomal protein S12/S23 [Macleaya cordata]	[more]
CDP06706.1	4.8e-74	85.55	unnamed protein product [Coffea canephora]	[more]

BLAST of ClCG02G020860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46297	1.0e-74	98.58	40S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1	[more]
Q9M5Z9	8.5e-74	97.87	40S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1	[more]
P49201	6.1e-72	96.45	40S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2	[more]
Q9SF35	2.8e-69	94.33	40S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2	[more]
Q9GRJ3	5.7e-62	80.99	40S ribosomal protein S23 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1	[more]

BLAST of ClCG02G020860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A200QHJ3	1.4e-74	93.51	Ribosomal protein S12/S23 OS=Macleaya cordata OX=56857 GN=BVC80_1751g75 PE=3 SV=...	[more]
A0A068UE32	2.3e-74	85.55	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00023642001 PE=3 ...	[more]
A0A2G5D591	8.8e-74	98.61	Uncharacterized protein (Fragment) OS=Aquilegia coerulea OX=218851 GN=AQUCO_0270...	[more]
A0A4Y7LBJ4	1.5e-73	95.30	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_045662 PE=3 SV=1	[more]
A0A5B6Z065	2.6e-73	95.27	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_006978...	[more]

BLAST of ClCG02G020860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02960.1	4.3e-73	96.45	Ribosomal protein S12/S23 family protein	[more]
AT3G09680.1	2.0e-70	94.33	Ribosomal protein S12/S23 family protein	[more]
ATCG00065.1	6.0e-06	36.26	ribosomal protein S12A	[more]
ATCG01230.1	6.0e-06	36.26	ribosomal protein S12B	[more]
ATCG00905.1	6.0e-06	36.26	ribosomal protein S12C	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 92..202 e-value: 2.4E-49 score: 165.7
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 58..202
IPR006032	Ribosomal protein S12/S23	PROSITE	PS00055	RIBOSOMAL_S12	coord: 120..127
None	No IPR available	GENE3D	2.40.50.140		coord: 86..203 e-value: 2.7E-46 score: 157.9
None	No IPR available	PANTHER	PTHR11652:SF59	BNACNNG03140D PROTEIN	coord: 58..202
IPR005680	Ribosomal protein S23, eukaryotic/archaeal	TIGRFAM	TIGR00982	TIGR00982	coord: 67..202 e-value: 2.2E-52 score: 174.4
IPR005680	Ribosomal protein S23, eukaryotic/archaeal	CDD	cd03367	Ribosomal_S23	coord: 87..200 e-value: 6.43722E-81 score: 235.241
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 81..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G020860.2	ClCG02G020860.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome