ClCG02G020360 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G020360
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	THO complex subunit 4A-like
Location	CG_Chr02: 34889961 .. 34891996 (-)
RNA-Seq Expression	ClCG02G020360
Synteny	ClCG02G020360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCTCCTTTGGATATGAGTCTTGATGATATCATAAAGAACAATAAAAAATCCAGATCCGGTAATTCTAGAGGTCGCGGAAGAGGTTCTGGACCCGGTCCCGTCCGTCGATTTCCCAATCGCGCCGCTAGTCGCACACCTTATTCCGCTCCCAAGGTGTGCTTTCGAGTTTTATCCCGATTCTCCTCTTTCGAATTCTGGATGGAAGTTTTGTTTTTATAGTTTTTGATTTGTTAAATTTGGCGTTAGGCGCCGGAGACGACGTGGCAGCACGATATGTTCGCCGATTCGGGTTCTGGATTCCCTGTGCAAGCTGGGAGAGCCTCCGCCATTCAGACTGGGACGAAGCTTTACATATCTAATTTGGATTACGGCGTTTCTAACGAAGATATTAAGGTATTTATACCTTTTGTGGATTATTGAAACGATAAGAGAGATTTCTTTTTTGTTTGGTTTTGTTGACAGTGGCGGTGTTTGCAGGAACTTTTTTCTGAAGTTGGTGAGATGAAACGTTACGGGATCCACTATGACAAGAGTGGGAGATCCAAGGTAGCTTACGAGGCCTAACATGAAATACTTGTTCTTGTGCGTTTTCTATTTTTTTTTTTTTGGTCGAAGTTTAGAAATCCTCTTTTCTATAGGGAACAGCAGAAGTAGTTTTCTCAAGACGACTAGATGCTGTTGCGGCCGTCAAGAAGTACAACAACGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACGCCTGCTGTTGGTCTTACCACTGCTGCGAACCCTTTCGAAAATTTAAATGGGGCTCCTAGAAGGTATAGATCCTATTCTGTTTTGTTCCGAAATCATTGAAACTAGAACACGAATTTGTTTATAATTGGATGGAACAGTTAACTACATCATCATAATGTAACAAAATATATTATGAATTGCTACTCGTTTGAATATGATGTGATATGGCATTAGCTGTTTTCAGTTTCTTGGGAGTGTATATTGTTACAACTGTTAAAATTTCTTCCCTTTGGGTTGGTGAGTTCTATTTCTGGAATTTCTATTGCAGTTTATTCATGAATGCTATATTAGTGAACTTACTGTATATGACTTTTGGAACACTTTAGGTGGTAGTATGCGGTTGTATGTCTTCTTGGTGAAATCTGCCTCTGATGCAGACAAATATGCAATTATGCATTTGTACTTGAAACAAAATTTTGAAGATTTGTGTAATGATGTATGACTATTGGAGCCATCTTTTTTCTTTTGTAGTATGCCCTTGTATTCAAATATCTTTATTAAGAACTCAGTTTGGCTTTGTTGACATCCGTTTTATATAATCAGTGGTACTATCTATATCATAATGACGTTCCTTTTCATTCGGAAACAGGCAGCAAGGTAGGGGTGGTCCACCATCACGTCAACGTGGTCGTGGTTTTGGAAGAGGGCGTGGGCGGGGAAGAGGTCCAAGTGAAAAAGTATCCGCTGAAGATCTTGATGCTGACTTGGAAAAGTATCATGCTGAGTCTATGCAGATAAATTAGTCAATTCTTATATATATGCTTTGGTTCAGCCAGCACTCTCTGTTCTCTGTATCACCACCATTGTCTAGACTTGGCAGAAAAGGGCTATAGTTTTCCGTTGAATTGGTTTGAATTTCTTTACAGCTTTTGGGCTTTTCTATTGTTTAGCTTTCGTATGATGACTTCAGCAAGGTAATGTAATTGATGAACAGTAGTCAGTGTGTACTCTGCTTTCATTCATTAAGTCCTTTCTGTTTCATTTAATGAGTTCGGAATCAAAGTGGATCTAATATCCTTAGCCCGATCACATCTGCGAGGATGACATTGGTTGGAATAAAACACCAGCTGCAAATTATACAACAAATGAGTTGGGGTTCCCCGTTGAGGTAGATGTCTATATTTTTTTGCCATTGATTTCCATTGTTTTCTCTCATGAATTCTATCTAATTTGTTGTTTCTCTTTTAATGTTTTTGCAGGGAACTTCAACTCACTAAAACTAATATATAA

mRNA sequence

ATGGCCGCTCCTTTGGATATGAGTCTTGATGATATCATAAAGAACAATAAAAAATCCAGATCCGGTAATTCTAGAGGTCGCGGAAGAGGTTCTGGACCCGGTCCCGTCCGTCGATTTCCCAATCGCGCCGCTAGTCGCACACCTTATTCCGCTCCCAAGGCGCCGGAGACGACGTGGCAGCACGATATGTTCGCCGATTCGGGTTCTGGATTCCCTGTGCAAGCTGGGAGAGCCTCCGCCATTCAGACTGGGACGAAGCTTTACATATCTAATTTGGATTACGGCGTTTCTAACGAAGATATTAAGGAACTTTTTTCTGAAGTTGGTGAGATGAAACGTTACGGGATCCACTATGACAAGAGTGGGAGATCCAAGGGAACAGCAGAAGTAGTTTTCTCAAGACGACTAGATGCTGTTGCGGCCGTCAAGAAGTACAACAACGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACGCCTGCTGTTGGTCTTACCACTGCTGCGAACCCTTTCGAAAATTTAAATGGGGCTCCTAGAAGGCAGCAAGGTAGGGGTGGTCCACCATCACGTCAACGTGGTCGTGGTTTTGGAAGAGGGCGTGGGCGGGGAAGAGGTCCAAGTGAAAAAGTATCCGCTGAAGATCTTGATGCTGACTTGGAAAACTTTTGGGCTTTTCTATTGTTTAGCTTTCGTATGATGACTTCAGCAAGCCCGATCACATCTGCGAGGATGACATTGGTTGGAATAAAACACCAGCTGCAAATTATACAACAAATGAGTTGGGGTTCCCCGTTGAGGGAACTTCAACTCACTAAAACTAATATATAA

Coding sequence (CDS)

ATGGCCGCTCCTTTGGATATGAGTCTTGATGATATCATAAAGAACAATAAAAAATCCAGATCCGGTAATTCTAGAGGTCGCGGAAGAGGTTCTGGACCCGGTCCCGTCCGTCGATTTCCCAATCGCGCCGCTAGTCGCACACCTTATTCCGCTCCCAAGGCGCCGGAGACGACGTGGCAGCACGATATGTTCGCCGATTCGGGTTCTGGATTCCCTGTGCAAGCTGGGAGAGCCTCCGCCATTCAGACTGGGACGAAGCTTTACATATCTAATTTGGATTACGGCGTTTCTAACGAAGATATTAAGGAACTTTTTTCTGAAGTTGGTGAGATGAAACGTTACGGGATCCACTATGACAAGAGTGGGAGATCCAAGGGAACAGCAGAAGTAGTTTTCTCAAGACGACTAGATGCTGTTGCGGCCGTCAAGAAGTACAACAACGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACGCCTGCTGTTGGTCTTACCACTGCTGCGAACCCTTTCGAAAATTTAAATGGGGCTCCTAGAAGGCAGCAAGGTAGGGGTGGTCCACCATCACGTCAACGTGGTCGTGGTTTTGGAAGAGGGCGTGGGCGGGGAAGAGGTCCAAGTGAAAAAGTATCCGCTGAAGATCTTGATGCTGACTTGGAAAACTTTTGGGCTTTTCTATTGTTTAGCTTTCGTATGATGACTTCAGCAAGCCCGATCACATCTGCGAGGATGACATTGGTTGGAATAAAACACCAGCTGCAAATTATACAACAAATGAGTTGGGGTTCCCCGTTGAGGGAACTTCAACTCACTAAAACTAATATATAA

Protein sequence

MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQHDMFADSGSGFPVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGLTTAANPFENLNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLENFWAFLLFSFRMMTSASPITSARMTLVGIKHQLQIIQQMSWGSPLRELQLTKTNI

Homology

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BLAST of ClCG02G020360 vs. NCBI nr
Match: XP_038901991.1 (THO complex subunit 4A-like [Benincasa hispida])

HSP 1 Score: 428.7 bits (1101), Expect = 3.9e-116
Identity = 219/231 (94.81%), Postives = 222/231 (96.10%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADSGSGFPVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYGIHYDK 120
           HDMFAD GSGF  Q GRASAIQTGTKLYISNLDYGVSNEDIKELFSEVG+MKRYGIHYDK
Sbjct: 61  HDMFADPGSGFAGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGLTTAANPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVG T A NPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 LNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLENFWA 232
           LNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLE + A
Sbjct: 181 LNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHA 231

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BLAST of ClCG02G020360 vs. NCBI nr
Match: XP_008448384.1 (PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_008448386.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_008448387.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_016900540.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo])

HSP 1 Score: 422.5 bits (1085), Expect = 2.8e-114
Identity = 217/231 (93.94%), Postives = 220/231 (95.24%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60

Query: 61  HDMFADSGSGFPVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYGIHYDK 120
           HDMFAD  SGF  Q GRASAIQTGTKLYISNLDYGVSNEDIKELFSEVG+MKR+GIHYDK
Sbjct: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGLTTAANPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVG T A NPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 LNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLENFWA 232
            NGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLE + A
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHA 231

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BLAST of ClCG02G020360 vs. NCBI nr
Match: XP_004143092.1 (THO complex subunit 4A [Cucumis sativus] >KGN47175.1 hypothetical protein Csa_020836 [Cucumis sativus])

HSP 1 Score: 422.2 bits (1084), Expect = 3.6e-114
Identity = 216/231 (93.51%), Postives = 220/231 (95.24%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADSGSGFPVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYGIHYDK 120
           HDMFAD  SGF VQ GRASAIQTGTKLYISNLDYGVSNEDIKELFSEVG+MKR+GIHYDK
Sbjct: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGLTTAANPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVG T A NPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 LNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLENFWA 232
            NGAPRRQQGRGGPPSRQRG GFGRGRGRGRGPSEKVSAEDLDADLE + A
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHA 231

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BLAST of ClCG02G020360 vs. NCBI nr
Match: KAG7035419.1 (THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 402.1 bits (1032), Expect = 3.9e-108
Identity = 209/232 (90.09%), Postives = 215/232 (92.67%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSG SRGRGRGSGPGPVRR PNRAA+RTPYSAPKAPETTWQ
Sbjct: 9   MAAPLDMSLDDIIKNNKKSRSGISRGRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTWQ 68

Query: 61  HDMFADSGSGFPVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYGIHYDK 120
           HDMF D G+GFPVQAGRAS+IQTGTKLYISNLDYGVSNEDIKELFSEVG+MKRYGIHYDK
Sbjct: 69  HDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 128

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGLTTAANPFEN 180
           SGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNI+T AVG   A NPFEN
Sbjct: 129 SGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFEN 188

Query: 181 LNGAPRRQQGRGGPPSRQR-GRGFGRGRGRGRGPSEKVSAEDLDADLENFWA 232
            NGAPRRQQGRGG PSRQR GRG GRGRGRGRGPSEKVSAEDLDADLE + A
Sbjct: 189 FNGAPRRQQGRGGLPSRQRGGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHA 240

[Close]

BLAST of ClCG02G020360 vs. NCBI nr
Match: XP_022947495.1 (THO complex subunit 4A-like [Cucurbita moschata])

HSP 1 Score: 402.1 bits (1032), Expect = 3.9e-108
Identity = 209/232 (90.09%), Postives = 215/232 (92.67%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSG SRGRGRGSGPGPVRR PNRAA+RTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGISRGRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADSGSGFPVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYGIHYDK 120
           HDMF D G+GFPVQAGRAS+IQTGTKLYISNLDYGVSNEDIKELFSEVG+MKRYGIHYDK
Sbjct: 61  HDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGLTTAANPFEN 180
           SGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNI+T AVG   A NPFEN
Sbjct: 121 SGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFEN 180

Query: 181 LNGAPRRQQGRGGPPSRQR-GRGFGRGRGRGRGPSEKVSAEDLDADLENFWA 232
            NGAPRRQQGRGG PSRQR GRG GRGRGRGRGPSEKVSAEDLDADLE + A
Sbjct: 181 FNGAPRRQQGRGGLPSRQRGGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHA 232

[Close]

BLAST of ClCG02G020360 vs. ExPASy Swiss-Prot
Match: Q8L773 (THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 2.0e-67
Identity = 154/243 (63.37%), Postives = 184/243 (75.72%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAASRT-PYSAPKAPE 60
           M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR ++R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TTWQHDMFADSGSGFPVQAGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYG 120
           +TW HDMF+D       ++GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVGE+KRY 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGLTTAA 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A      A
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NPFENLNGAP-RRQQGRGGPPSRQRG--------RGFGRGRGRGRGPSEKVSAEDLDADL 230
           N   N NGAP R  QGRGG   +QRG         G GRGR  G+GP+EK+SAEDLDADL
Sbjct: 181 N--GNSNGAPWRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADL 236

[Close]

BLAST of ClCG02G020360 vs. ExPASy Swiss-Prot
Match: Q8L719 (THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 4.1e-60
Identity = 155/284 (54.58%), Postives = 176/284 (61.97%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAASRT-P 60
           M+  LDMSLDDIIK+N+K      RG            G GS  GP RRF NR  +RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSAP----KAPETTWQHDMFADS-------GSGFPVQAGRASAIQTGTKLYISNLDYGVS 120
           YS P    +A +  WQ+D+FA         G       G  S+I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGEMKRYGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKI 180
           NEDIKELFSEVG++KRYGIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNISTPAVG-LTTAANPF----------ENLNG-------APRRQQGRGGPPSRQR 230
           EIVGTN+S PA+  L TA  PF          EN NG          R +GRGG   R R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

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BLAST of ClCG02G020360 vs. ExPASy Swiss-Prot
Match: Q6NQ72 (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.7e-40
Identity = 122/289 (42.21%), Postives = 157/289 (54.33%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGN---SRGRGR-----GSGPGPVRRFP---NRAASRTPY 60
           M+  L+M+LD+I+K  K +RSG    SRGRGR     G G GP RR P   N   S    
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGGGGRGAGPARRGPLAVNARPSSFTI 60

Query: 61  SAP--KAPETTWQHDMFADSGSGFPVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSE 120
           + P  +     WQ  +F D      ++A  AS ++ GT+L+++NLD GV+NEDI+ELFSE
Sbjct: 61  NKPVRRVRSLPWQSGLFEDG-----LRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFSE 120

Query: 121 VGEMKRYGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTP 180
           +GE++RY IHYDK+GR  GTAEVV+ RR DA  A+KKYNNV LDG+PM++EI+G N S+ 
Sbjct: 121 IGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSE 180

Query: 181 A----------VGL--------------------------------TTAANPFENLNGAP 232
           A           GL                                 +   P  N  G  
Sbjct: 181 APLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGGG 240

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BLAST of ClCG02G020360 vs. ExPASy Swiss-Prot
Match: Q3T0I4 (THO complex subunit 4 OS=Bos taurus OX=9913 GN=ALYREF PE=2 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.1e-40
Identity = 113/264 (42.80%), Postives = 148/264 (56.06%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRG-------------------SGPGPVRRFPN 60
           MA  +DMSLDDIIK N+  R G   GRGRG                    G GP+R  P 
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPA 60

Query: 61  RAASR---------TPYSAPKAPETTWQHDMFADSGSGFPVQAGRASAIQTGTKLYISNL 120
            A             PYS PK     WQHD+F    SGF    G  + ++TG KL +SNL
Sbjct: 61  IARGAAGGGGRNRPAPYSRPKQLPDKWQHDLF---DSGF----GGGAGVETGGKLLVSNL 120

Query: 121 DYGVSNEDIKELFSEVGEMKRYGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDG 180
           D+GVS+ DI+ELF+E G +K+  +HYD+SGRS GTA+V F R+ DA+ A+K+YN V LDG
Sbjct: 121 DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG 180

Query: 181 KPMKIEIVGTNISTPAVGLTTAANPFENLN-GAPRRQQGR----GGPPSRQRGRGFGRGR 230
           +PM I++V + I        T   P +++N G   R +G     GG  +R+  RG  RGR
Sbjct: 181 RPMNIQLVTSQID-------TQRRPAQSVNRGGMTRNRGSGGFGGGGGTRRGTRGGSRGR 240

[Close]

BLAST of ClCG02G020360 vs. ExPASy Swiss-Prot
Match: O08583 (THO complex subunit 4 OS=Mus musculus OX=10090 GN=Alyref PE=1 SV=3)

HSP 1 Score: 165.6 bits (418), Expect = 8.0e-40
Identity = 110/262 (41.98%), Postives = 145/262 (55.34%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRG-------------------SGPGPVRRFPN 60
           MA  +DMSLDDIIK N+  R G   GRGRG                    G GP+R  P 
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGAVQAAARVNRGGGPMRNRPA 60

Query: 61  RAASR--------TPYSAPKAPETTWQHDMFADSGSGFPVQAGRASAIQTGTKLYISNLD 120
            A            PYS PK     WQHD+F    SGF    G  + ++TG KL +SNLD
Sbjct: 61  IARGAAGGGRNRPAPYSRPKQLPDKWQHDLF---DSGF----GGGAGVETGGKLLVSNLD 120

Query: 121 YGVSNEDIKELFSEVGEMKRYGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGK 180
           +GVS+ DI+ELF+E G +K+  +HYD+SGRS GTA+V F R+ DA+ A+K+YN V LDG+
Sbjct: 121 FGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR 180

Query: 181 PMKIEIVGTNISTPAVGLTTAANPFENLN-GAPRRQQGR-----GGPPSRQRGRGFGRGR 230
           PM I++V + I        T   P +++N G   R +G      GG     RG   GRGR
Sbjct: 181 PMNIQLVTSQID-------TQRRPAQSINRGGMTRNRGSGGFGGGGTRRGTRGGSRGRGR 240

[Close]

BLAST of ClCG02G020360 vs. ExPASy TrEMBL
Match: A0A1S3BK70 (THO complex subunit 4A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490589 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 1.3e-114
Identity = 217/231 (93.94%), Postives = 220/231 (95.24%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60

Query: 61  HDMFADSGSGFPVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYGIHYDK 120
           HDMFAD  SGF  Q GRASAIQTGTKLYISNLDYGVSNEDIKELFSEVG+MKR+GIHYDK
Sbjct: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGLTTAANPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVG T A NPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 LNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLENFWA 232
            NGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLE + A
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHA 231

[Close]

BLAST of ClCG02G020360 vs. ExPASy TrEMBL
Match: A0A0A0KBU2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G193610 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 1.7e-114
Identity = 216/231 (93.51%), Postives = 220/231 (95.24%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADSGSGFPVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYGIHYDK 120
           HDMFAD  SGF VQ GRASAIQTGTKLYISNLDYGVSNEDIKELFSEVG+MKR+GIHYDK
Sbjct: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGLTTAANPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVG T A NPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 LNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLENFWA 232
            NGAPRRQQGRGGPPSRQRG GFGRGRGRGRGPSEKVSAEDLDADLE + A
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHA 231

[Close]

BLAST of ClCG02G020360 vs. ExPASy TrEMBL
Match: A0A6J1G721 (THO complex subunit 4A-like OS=Cucurbita moschata OX=3662 GN=LOC111451345 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 1.9e-108
Identity = 209/232 (90.09%), Postives = 215/232 (92.67%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSG SRGRGRGSGPGPVRR PNRAA+RTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGISRGRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADSGSGFPVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYGIHYDK 120
           HDMF D G+GFPVQAGRAS+IQTGTKLYISNLDYGVSNEDIKELFSEVG+MKRYGIHYDK
Sbjct: 61  HDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGLTTAANPFEN 180
           SGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNI+T AVG   A NPFEN
Sbjct: 121 SGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFEN 180

Query: 181 LNGAPRRQQGRGGPPSRQR-GRGFGRGRGRGRGPSEKVSAEDLDADLENFWA 232
            NGAPRRQQGRGG PSRQR GRG GRGRGRGRGPSEKVSAEDLDADLE + A
Sbjct: 181 FNGAPRRQQGRGGLPSRQRGGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHA 232

[Close]

BLAST of ClCG02G020360 vs. ExPASy TrEMBL
Match: A0A6J1L1M6 (THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111499593 PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 5.4e-108
Identity = 208/232 (89.66%), Postives = 214/232 (92.24%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSG SRGRGRGSGPGPVRR PNRAA+RTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGISRGRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADSGSGFPVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYGIHYDK 120
           HDMF D G+GFPVQAGRAS+IQTGTKLYISNLDYGVSNEDIKELFSEVG+MKRYGIHYDK
Sbjct: 61  HDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGLTTAANPFEN 180
           SGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNI+T AVG   A NPFEN
Sbjct: 121 SGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFEN 180

Query: 181 LNGAPRRQQGRGGPPSRQR-GRGFGRGRGRGRGPSEKVSAEDLDADLENFWA 232
            NG PRRQQGRGG PSRQR GRG GRGRGRGRGPSEKVSAEDLDADLE + A
Sbjct: 181 FNGVPRRQQGRGGLPSRQRGGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHA 232

[Close]

BLAST of ClCG02G020360 vs. ExPASy TrEMBL
Match: A0A5A7V158 (THO complex subunit 4A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00510 PE=4 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 7.1e-108
Identity = 205/217 (94.47%), Postives = 208/217 (95.85%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60

Query: 61  HDMFADSGSGFPVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYGIHYDK 120
           HDMFAD  SGF  Q GRASAIQTGTKLYISNLDYGVSNEDIKELFSEVG+MKR+GIHYDK
Sbjct: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGLTTAANPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVG T A NPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 LNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKV 218
            NGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEK+
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKL 217

[Close]

BLAST of ClCG02G020360 vs. TAIR 10
Match: AT5G59950.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 257.3 bits (656), Expect = 1.4e-68
Identity = 154/243 (63.37%), Postives = 184/243 (75.72%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAASRT-PYSAPKAPE 60
           M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR ++R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TTWQHDMFADSGSGFPVQAGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYG 120
           +TW HDMF+D       ++GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVGE+KRY 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGLTTAA 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A      A
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NPFENLNGAP-RRQQGRGGPPSRQRG--------RGFGRGRGRGRGPSEKVSAEDLDADL 230
           N   N NGAP R  QGRGG   +QRG         G GRGR  G+GP+EK+SAEDLDADL
Sbjct: 181 N--GNSNGAPWRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADL 236

[Close]

BLAST of ClCG02G020360 vs. TAIR 10
Match: AT5G59950.5 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 256.9 bits (655), Expect = 1.9e-68
Identity = 154/244 (63.11%), Postives = 184/244 (75.41%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAASRT-PYSAPKAPE 60
           M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR ++R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TTWQHDMFADSGSGFPVQAGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYG 120
           +TW HDMF+D       ++GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVGE+KRY 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGLTTAA 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A      A
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NPFENLNGAP--RRQQGRGGPPSRQRG--------RGFGRGRGRGRGPSEKVSAEDLDAD 230
           N   N NGAP  R  QGRGG   +QRG         G GRGR  G+GP+EK+SAEDLDAD
Sbjct: 181 N--GNSNGAPWSRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDAD 237

[Close]

BLAST of ClCG02G020360 vs. TAIR 10
Match: AT5G59950.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 251.1 bits (640), Expect = 1.0e-66
Identity = 153/243 (62.96%), Postives = 183/243 (75.31%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAASRT-PYSAPKAPE 60
           M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR ++R+ PY +  APE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQS--APE 60

Query: 61  TTWQHDMFADSGSGFPVQAGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYG 120
           +TW HDMF+D       ++GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVGE+KRY 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGLTTAA 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A      A
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NPFENLNGAP-RRQQGRGGPPSRQRG--------RGFGRGRGRGRGPSEKVSAEDLDADL 230
           N   N NGAP R  QGRGG   +QRG         G GRGR  G+GP+EK+SAEDLDADL
Sbjct: 181 N--GNSNGAPWRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADL 234

[Close]

BLAST of ClCG02G020360 vs. TAIR 10
Match: AT5G02530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 233.0 bits (593), Expect = 2.9e-61
Identity = 155/284 (54.58%), Postives = 176/284 (61.97%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAASRT-P 60
           M+  LDMSLDDIIK+N+K      RG            G GS  GP RRF NR  +RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSAP----KAPETTWQHDMFADS-------GSGFPVQAGRASAIQTGTKLYISNLDYGVS 120
           YS P    +A +  WQ+D+FA         G       G  S+I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGEMKRYGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKI 180
           NEDIKELFSEVG++KRYGIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNISTPAVG-LTTAANPF----------ENLNG-------APRRQQGRGGPPSRQR 230
           EIVGTN+S PA+  L TA  PF          EN NG          R +GRGG   R R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

[Close]

BLAST of ClCG02G020360 vs. TAIR 10
Match: AT5G02530.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 231.5 bits (589), Expect = 8.4e-61
Identity = 154/282 (54.61%), Postives = 175/282 (62.06%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAASRT-P 60
           M+  LDMSLDDIIK+N+K      RG            G GS  GP RRF NR  +RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSAP----KAPETTWQHDMFADS-------GSGFPVQAGRASAIQTGTKLYISNLDYGVS 120
           YS P    +A +  WQ+D+FA         G       G  S+I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGEMKRYGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKI 180
           NEDIKELFSEVG++KRYGIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNISTPAVG-LTTAANPF----------ENLNGAPRRQ-----QGRGGPPSRQRGR 230
           EIVGTN+S PA+  L TA  PF          EN NG          +GRGG   R RG 
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGGFMGRPRGG 240

The following BLAST results are available for this feature:

BLAST of ClCG02G020360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901991.1	3.9e-116	94.81	THO complex subunit 4A-like [Benincasa hispida]	[more]
XP_008448384.1	2.8e-114	93.94	PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_008448386.1...	[more]
XP_004143092.1	3.6e-114	93.51	THO complex subunit 4A [Cucumis sativus] >KGN47175.1 hypothetical protein Csa_02...	[more]
KAG7035419.1	3.9e-108	90.09	THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022947495.1	3.9e-108	90.09	THO complex subunit 4A-like [Cucurbita moschata]	[more]

BLAST of ClCG02G020360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L773	2.0e-67	63.37	THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1	[more]
Q8L719	4.1e-60	54.58	THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1	[more]
Q6NQ72	2.7e-40	42.21	THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1	[more]
Q3T0I4	6.1e-40	42.80	THO complex subunit 4 OS=Bos taurus OX=9913 GN=ALYREF PE=2 SV=1	[more]
O08583	8.0e-40	41.98	THO complex subunit 4 OS=Mus musculus OX=10090 GN=Alyref PE=1 SV=3	[more]

BLAST of ClCG02G020360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BK70	1.3e-114	93.94	THO complex subunit 4A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490589 P...	[more]
A0A0A0KBU2	1.7e-114	93.51	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G193610 PE=4 SV...	[more]
A0A6J1G721	1.9e-108	90.09	THO complex subunit 4A-like OS=Cucurbita moschata OX=3662 GN=LOC111451345 PE=4 S...	[more]
A0A6J1L1M6	5.4e-108	89.66	THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111499593 PE=4 SV=...	[more]
A0A5A7V158	7.1e-108	94.47	THO complex subunit 4A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

BLAST of ClCG02G020360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59950.1	1.4e-68	63.37	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.5	1.9e-68	63.11	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.3	1.0e-66	62.96	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.1	2.9e-61	54.58	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.2	8.4e-61	54.61	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 162..231 e-value: 2.3E-6 score: 37.1
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 178..231 e-value: 2.0E-9 score: 38.0
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 86..158 e-value: 1.5E-18 score: 77.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 87..155 e-value: 2.0E-14 score: 53.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 85..162 score: 16.039637
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 73..219 e-value: 1.0E-25 score: 92.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..218
None	No IPR available	PANTHER	PTHR19965:SF74	CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED	coord: 1..231
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..231
None	No IPR available	CDD	cd12680	RRM_THOC4	coord: 85..159 e-value: 8.52818E-48 score: 152.023
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 20..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G020360.2	ClCG02G020360.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding