ClCG02G018180 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG02G018180
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionProtein RALF-like 17
LocationCG_Chr02: 32832695 .. 32833042 (+)
RNA-Seq ExpressionClCG02G018180
SyntenyClCG02G018180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTTTCAAGACGACTGGCCCTTCTTTGCCTCGGAACAATCCTTCTCTGCTTCTTGTTCACTAGAGTTTCCGCCGCCGGATCCGAATACGGCGGCGACATTCACACCGTCAGGCACTCCTCCGACACCGCCGACTGCAATGGCGAACATCCCGACAAAGGCGACCAATGCAGGGAAGAAAACGACGTGGTTGAGGACGATGATTTCGACGACACCTACAAGATCGTCAACAACATCGCCGTAACCCTATCGGCGACCGGCAGTATACTTCAGGAGACGGAGGAATTGGACGATATCCCGGCTTCGGAGGAAGAGGTCGGCAACATGTTTATAGTGGGGCACTGA

mRNA sequence

ATGGCTGTTTCAAGACGACTGGCCCTTCTTTGCCTCGGAACAATCCTTCTCTGCTTCTTGTTCACTAGAGTTTCCGCCGCCGGATCCGAATACGGCGGCGACATTCACACCGTCAGGCACTCCTCCGACACCGCCGACTGCAATGGCGAACATCCCGACAAAGGCGACCAATGCAGGGAAGAAAACGACGTGGTTGAGGACGATGATTTCGACGACACCTACAAGATCGTCAACAACATCGCCGTAACCCTATCGGCGACCGGCAGTATACTTCAGGAGACGGAGGAATTGGACGATATCCCGGCTTCGGAGGAAGAGGTCGGCAACATGTTTATAGTGGGGCACTGA

Coding sequence (CDS)

ATGGCTGTTTCAAGACGACTGGCCCTTCTTTGCCTCGGAACAATCCTTCTCTGCTTCTTGTTCACTAGAGTTTCCGCCGCCGGATCCGAATACGGCGGCGACATTCACACCGTCAGGCACTCCTCCGACACCGCCGACTGCAATGGCGAACATCCCGACAAAGGCGACCAATGCAGGGAAGAAAACGACGTGGTTGAGGACGATGATTTCGACGACACCTACAAGATCGTCAACAACATCGCCGTAACCCTATCGGCGACCGGCAGTATACTTCAGGAGACGGAGGAATTGGACGATATCCCGGCTTCGGAGGAAGAGGTCGGCAACATGTTTATAGTGGGGCACTGA

Protein sequence

MAVSRRLALLCLGTILLCFLFTRVSAAGSEYGGDIHTVRHSSDTADCNGEHPDKGDQCREENDVVEDDDFDDTYKIVNNIAVTLSATGSILQETEELDDIPASEEEVGNMFIVGH
Homology
BLAST of ClCG02G018180 vs. NCBI nr
Match: KAA0054503.1 (hypothetical protein E6C27_scaffold24G002830 [Cucumis melo var. makuwa] >TYK14536.1 hypothetical protein E5676_scaffold552G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 177.9 bits (450), Expect = 4.8e-41
Identity = 94/117 (80.34%), Postives = 103/117 (88.03%), Query Frame = 0

Query: 1   MAVSRRLAL-LCLGTILLCFLFTRVSAAGSEYGGDIHTVRHSSDTADCNGEHPDKGDQCR 60
           MA+SRRLAL L LGTIL  FLFTRVSAAGS+YG DIHTVRH SDTADC  EH DKGDQCR
Sbjct: 1   MAISRRLALILSLGTILFSFLFTRVSAAGSDYGNDIHTVRHPSDTADCKREHLDKGDQCR 60

Query: 61  EENDVVEDDDFDDTYKIVNNIAVTLSATGSILQ-ETEELDDIPASEEEVGNMFIVGH 116
           E+ND+ EDDDFDDTYKIVNNIA+TLSA+GSILQ + EE DDIP+SEEE+GNM IVGH
Sbjct: 61  EDNDLFEDDDFDDTYKIVNNIAITLSASGSILQPDAEESDDIPSSEEEIGNMLIVGH 117

BLAST of ClCG02G018180 vs. NCBI nr
Match: KAG6570557.1 (hypothetical protein SDJN03_29472, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 164.1 bits (414), Expect = 7.2e-37
Identity = 84/115 (73.04%), Postives = 96/115 (83.48%), Query Frame = 0

Query: 1   MAVSRRLALLCLGTILLCFLFTRVSAAGSEYGGDIHTVRHSSDTADCNGEHPDKGDQCRE 60
           MAVSRRLALL LGTILLC LFTR + A S+YG DIHTVRHSSD+ +CN E P KGDQCRE
Sbjct: 1   MAVSRRLALLSLGTILLCLLFTRAAIAESDYGDDIHTVRHSSDSDNCNREQPYKGDQCRE 60

Query: 61  ENDVVEDDDFDDTYKIVNNIAVTLSATGSILQETEELDDIPASEEEVGNMFIVGH 116
           END VED+DFDDTYKIVNN+A+ LSA+GS L+E EE DD+P  EEE+ N+ IVGH
Sbjct: 61  ENDGVEDEDFDDTYKIVNNVAIRLSASGSKLREAEEEDDLPVPEEEIRNLSIVGH 115

BLAST of ClCG02G018180 vs. NCBI nr
Match: KAE8646929.1 (hypothetical protein Csa_021071 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 1.2e-34
Identity = 87/115 (75.65%), Postives = 97/115 (84.35%), Query Frame = 0

Query: 1   MAVSRRLAL-LCLGTILLCFLFTRVS-AAGSEYGGDIHTVRHSSDTADCNGEHPDKGDQC 60
           MA+SRRL L L LGTIL CFLF  VS AAG +YG DIHTV+H SDTA+C  EH DKGDQC
Sbjct: 1   MAISRRLPLILTLGTILFCFLFIGVSAAAGPDYGDDIHTVKHPSDTAECKREHLDKGDQC 60

Query: 61  REENDVVEDDDFDDTYKIVNNIAVTLSATGSIL-QETEELDDIPASEEEVGNMFI 113
           REEND+ EDDDFDDTYKIVNNIAVTLSA+G IL QETEE +DIP+SEEE+GN+ I
Sbjct: 61  REENDLFEDDDFDDTYKIVNNIAVTLSASGRILQQETEESEDIPSSEEEMGNILI 115

BLAST of ClCG02G018180 vs. NCBI nr
Match: KAG6604744.1 (hypothetical protein SDJN03_02061, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.5 bits (262), Expect = 3.1e-19
Identity = 60/93 (64.52%), Postives = 71/93 (76.34%), Query Frame = 0

Query: 1  MAVSRRLALLCLGTILLCFLFTRVSAAGSEYGGDIHTVRHSSDTADCNGEHPDKGDQCRE 60
          MAVSRRLAL  LGTILLCFL TR + A S++G ++H VR+SS   D      +K  QCR+
Sbjct: 1  MAVSRRLALFSLGTILLCFLITRAAVADSDHGHNVHVVRYSSAATD----ESEKAHQCRQ 60

Query: 61 ENDVVEDDDFDDTYKIVNNIAVTLSATGSILQE 94
          END V DDDFDDTYKIVNNIA+TLSA+G IL+E
Sbjct: 61 ENDDV-DDDFDDTYKIVNNIAITLSASGRILKE 88

BLAST of ClCG02G018180 vs. NCBI nr
Match: RXH90050.1 (hypothetical protein DVH24_032407 [Malus domestica])

HSP 1 Score: 83.6 bits (205), Expect = 1.2e-12
Identity = 55/118 (46.61%), Postives = 72/118 (61.02%), Query Frame = 0

Query: 1   MAVSRRLALLCLGTILLCFLFTRVSAAGSEYGGDIHTVRHSSDTADCNGEHPDKGDQCRE 60
           MAVSRRL LLCLGT+L      +V+ A   +G             DC+ + P+ GDQCRE
Sbjct: 1   MAVSRRLLLLCLGTLLASVFLLKVAEARENHG-------------DCHSD-PNNGDQCRE 60

Query: 61  -ENDVVEDDDFDDTYKIVNNIAVTLSA-TGSILQETEELDDIPASEE-EVGNMFIVGH 116
            E D V DDD DDTYKIVN +AVTLSA TG +  + +EL D   +E+ E  ++ ++GH
Sbjct: 61  DETDAVGDDDVDDTYKIVNKVAVTLSARTGEVEPDADELPDADETEDNESSHVIVMGH 104

BLAST of ClCG02G018180 vs. ExPASy TrEMBL
Match: A0A5D3CVV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00150 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.3e-41
Identity = 94/117 (80.34%), Postives = 103/117 (88.03%), Query Frame = 0

Query: 1   MAVSRRLAL-LCLGTILLCFLFTRVSAAGSEYGGDIHTVRHSSDTADCNGEHPDKGDQCR 60
           MA+SRRLAL L LGTIL  FLFTRVSAAGS+YG DIHTVRH SDTADC  EH DKGDQCR
Sbjct: 1   MAISRRLALILSLGTILFSFLFTRVSAAGSDYGNDIHTVRHPSDTADCKREHLDKGDQCR 60

Query: 61  EENDVVEDDDFDDTYKIVNNIAVTLSATGSILQ-ETEELDDIPASEEEVGNMFIVGH 116
           E+ND+ EDDDFDDTYKIVNNIA+TLSA+GSILQ + EE DDIP+SEEE+GNM IVGH
Sbjct: 61  EDNDLFEDDDFDDTYKIVNNIAITLSASGSILQPDAEESDDIPSSEEEIGNMLIVGH 117

BLAST of ClCG02G018180 vs. ExPASy TrEMBL
Match: A0A0A0KGZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169270 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.5e-37
Identity = 90/118 (76.27%), Postives = 100/118 (84.75%), Query Frame = 0

Query: 1   MAVSRRLAL-LCLGTILLCFLFTRVS-AAGSEYGGDIHTVRHSSDTADCNGEHPDKGDQC 60
           MA+SRRL L L LGTIL CFLF  VS AAG +YG DIHTV+H SDTA+C  EH DKGDQC
Sbjct: 1   MAISRRLPLILTLGTILFCFLFIGVSAAAGPDYGDDIHTVKHPSDTAECKREHLDKGDQC 60

Query: 61  REENDVVEDDDFDDTYKIVNNIAVTLSATGSIL-QETEELDDIPASEEEVGNMFIVGH 116
           REEND+ EDDDFDDTYKIVNNIAVTLSA+G IL QETEE +DIP+SEEE+GN+ IVGH
Sbjct: 61  REENDLFEDDDFDDTYKIVNNIAVTLSASGRILQQETEESEDIPSSEEEMGNILIVGH 118

BLAST of ClCG02G018180 vs. ExPASy TrEMBL
Match: A0A2N9FLD3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15974 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.5e-13
Identity = 55/121 (45.45%), Postives = 77/121 (63.64%), Query Frame = 0

Query: 1   MAVSRRLALLCLGTILLCFLFTRVSAAG-SEYGGDIHTVRHSSDTADCNGEHPDKGDQCR 60
           MA+SR + L  LGT+L+C L  +VS A  S++   IH ++H  D   C+G HP+ GDQCR
Sbjct: 1   MAISRSVLLFGLGTLLVCLLLIKVSEADESDHYAPIHVIKH--DGIHCDGAHPNNGDQCR 60

Query: 61  EENDVVE--DDDFDDTYKIVNNIAVTLSA-TG-SILQETEELDDIPASEEEVGN-MFIVG 116
            ++D  E  DDD DDTYK+VN ++V+ SA TG S   E     D  ++EEE+ N M ++G
Sbjct: 61  NDDDDNEEVDDDVDDTYKVVNKMSVSFSASTGQSSSSEDPSESDATSTEEELNNHMIVLG 119

BLAST of ClCG02G018180 vs. ExPASy TrEMBL
Match: A0A498J3I4 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_032407 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.0e-13
Identity = 55/118 (46.61%), Postives = 72/118 (61.02%), Query Frame = 0

Query: 1   MAVSRRLALLCLGTILLCFLFTRVSAAGSEYGGDIHTVRHSSDTADCNGEHPDKGDQCRE 60
           MAVSRRL LLCLGT+L      +V+ A   +G             DC+ + P+ GDQCRE
Sbjct: 1   MAVSRRLLLLCLGTLLASVFLLKVAEARENHG-------------DCHSD-PNNGDQCRE 60

Query: 61  -ENDVVEDDDFDDTYKIVNNIAVTLSA-TGSILQETEELDDIPASEE-EVGNMFIVGH 116
            E D V DDD DDTYKIVN +AVTLSA TG +  + +EL D   +E+ E  ++ ++GH
Sbjct: 61  DETDAVGDDDVDDTYKIVNKVAVTLSARTGEVEPDADELPDADETEDNESSHVIVMGH 104

BLAST of ClCG02G018180 vs. ExPASy TrEMBL
Match: A0A540N9K5 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_006659 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 5.1e-12
Identity = 52/118 (44.07%), Postives = 72/118 (61.02%), Query Frame = 0

Query: 1   MAVSRRLALLCLGTILLCFLFTRVSAAGSEYGGDIHTVRHSSDTADCNGEHPDKGDQCRE 60
           MAVSR L LLCLGT+L+     +V+ A  ++G             DC+G+ P+ GDQC+E
Sbjct: 1   MAVSRGLLLLCLGTLLVSVFLVKVAEASEDHG-------------DCHGD-PNNGDQCQE 60

Query: 61  -ENDVVEDDDFDDTYKIVNNIAVTLSA-TGSILQETEELDD-IPASEEEVGNMFIVGH 116
            E+DV+ DDD DDTYKIVN +AVT SA TG +  +  E  D   A + E  ++ ++GH
Sbjct: 61  HESDVIGDDDVDDTYKIVNKVAVTFSARTGEVEPDAAEASDPDDAEDNESSHVIVMGH 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0054503.14.8e-4180.34hypothetical protein E6C27_scaffold24G002830 [Cucumis melo var. makuwa] >TYK1453... [more]
KAG6570557.17.2e-3773.04hypothetical protein SDJN03_29472, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8646929.11.2e-3475.65hypothetical protein Csa_021071 [Cucumis sativus][more]
KAG6604744.13.1e-1964.52hypothetical protein SDJN03_02061, partial [Cucurbita argyrosperma subsp. sorori... [more]
RXH90050.11.2e-1246.61hypothetical protein DVH24_032407 [Malus domestica][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CVV22.3e-4180.34Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KGZ43.5e-3776.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169270 PE=4 SV=1[more]
A0A2N9FLD33.5e-1345.45Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15974 PE=4 SV=1[more]
A0A498J3I46.0e-1346.61Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_032407 PE=4 SV=1[more]
A0A540N9K55.1e-1244.07Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_006659 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G018180.1ClCG02G018180.1mRNA