ClCG02G016900 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG02G016900
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionVQ domain-containing protein
LocationCG_Chr02: 31392215 .. 31397340 (+)
RNA-Seq ExpressionClCG02G016900
SyntenyClCG02G016900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAATCTTACAAGCCTTCCTAGTAATCCTGATCACCAAAAAATTACCCAAATTCCCAACAAACCAACAATTGATCAAAACAAGCCTATCAAAGTGAAGTACATTTCTAGTCCCATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGTGCCATTGTTCAAAAGCTCACCGGCCAGCACTCCTCCCCTGATGATGCTTTTCATCAATCACTTCAAGAGTTTAACCAAGTTTTTTATCCCCCGACGTCGTCCCTGGCCGTGGCTTCTTTCGACCCTAAGGATTGCTATGCTTTTTCGTCCACCGGTCATGTCTTTGATCCAACCGGAGTCGCCGAAGGCCATTATTGGCGGGGTGAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATTTGGTGATGAAGATGAAGACAGGAAGTTGATATGATAAGTGGTATCATGGCTTTTTTATTTTTATTTTTATTTTTATTTTTATTTTATTAGAAGTATAGTTTTTGTGGGACTTTGTATTTAAGTATGTGAGATGTTATGAATATAAATTTGGATTTTGTTTTATTGATTCAACAAGAGGTAGAAATTCTAGTTTCTTAATAATAAGTTTCATATCAACTTAAAATATATACTCTCTCCATCAAAAAGTAAAAAATTCAACTATTCTATAGTAGTACTAGATGTATGTGTTATTGTTGTGTTAGACTAAAACTACTTGTTTTCAAATTATATATGAATTAAAAGAATATATGACTAGGAAATTATTCGTTGGTTAGTGTCCAATTATGAATAAGGATGAAAATTTTGGAAGGCAACTTAGCTCAATCTTCTATAATGTTTGTAAAAATAATTATTAATATATAAGTTTTTTTTTTAAATATTTATAATTATATTGTTATTTAAAAGTTTTGGTTTACATTATATTTTGGTCACAAGTTTTGAAGTTTATTCTATTGTGTTATGAAGTTTATTCTATTGTGTTATTTGAACTTTTAAATTATCCTTTTAATTTCTAAACTTTGATCAAAATTCAATAAATCTTTTTAAAAAATTAAGGAGCAAAATATAATACAATTGAAAACTATTTAAAGAGAAAATGAGATTTGAACTAAATATATTATTTCATAAATGGTTATCAAAGTATTTTTATTTTGGAAAAAAAAAAATTAATTCATATCCCTAAATGTTTTGGTAGTTTGATCTATTAAAATACTAAATTTTTATAAGTAGAATCAATTTAAATCATTCATTAAGATTTGGTTTTAAAATTATCAATGGGTAATTTTCACATATGTATAAACTTCTTTAAATGAAGAGATAATTAACATAATATTAGAGAAAGCTGTTGGAATTGAATGAATATAATAATGGCTCATATTAAGTTAATTTCATAAATAGTTATCACAGTGTTTTTATTTTGGAAACAAAAAATTGTTTCAAATTCTTATCTCTAAATATTTTGGTAGTTTGATCTATTATCATACTAAATTTTTATAAGTAGATCCATCTAAATCATTCATTAAAATTTTGTTTCAAAATTATCAATGCATAATTTTCACATATATGTATAAACTTCTTTAAATGAAAAGATAATTAACATAATATTGGAATTGAATGAATATAATAATGATTTCATATTAAGTTAATTTCATAAATGGTTATCAAAGTATTTTTATTTTGGAAAAAATTAATTCATATCTCTAAATATTTTGGTAGTTTGATCTATTAAAATACTAATCATCAGTAGATCAATCTAAATCCTTCACTAAAATTTTGTTTTAAAATTATCAATGTGTAATTTTCACATATGTATAAATTTCTTTAAATAAAGAGATAATTAACATAATATTCGAAAAAGCTGTTGAAATTAAATGAATATAATAATAGCTCATATTAAGTTAATTTCTTATGAAGGAATAATTTTATCTTTATGATTTTGAGTTGAATGTAAATAAAATCAAGGGAAAATATAATTATAAATTATTAAAAAGTTTAGAGTTTTAATTTATCAAATTTTTCGCATATAAATTAATTTTCTTTTTAAGTTATATGATAATGGCCACTTATTTAAATAGGTCAATAACCTAGTTAGATATTAACAAACTATAATTATGACAATTGATATAAAATAGATAACAAAAGAAGAAATTTGGAGGTAGAAGTAGTCTTTATAGGCTTAATATGAAAAAAAGAAAAAAAAATTAAAAGGTTACCAAACGGGATCTGAATATATATAAATTACCACTAAACTATGCTCAATTTGAATGTGTGGGATAAATTAGCTTACATTATGTAATCTGACACAATGCTTGTTTTCTTTTTTTTGTTGGAATAAAGAGAAGATTTTAGCTAAAACTTGAATCTAAGAAAGACATAAAACCAACAACCAACAAGATTACATTGCCCGTTTAGTCTCACAAACGATCTATAGTTTATTAATTATTAGTTCTAAATTATTGATCAGTAAGACTTATTATTATTATTATTATTATTATTATTATTATTATTTGAGATAGACCAATAAGACTGTTAGACAGTCAAACAAGTGAGCCAAAAAGATTGTTATTGTTGTTAATTATAATACACAATTAATATAGCAAAGCTGGTAAACTTTGTCTTTGGTCCATTAAGCCAAAATTATAAAACAATTAATCAAGAGATTATTGTGACTTTTAATGACATTGACTACATGCAGAATTTGTGGACAAATTGATTTTCCACATTCAAAACCAATGATCATCTCATATAGATACAAACTAAACTTTTTGACTGAGCTACTTGCAAAGTTTTTTAAATCTTATTTTGTCCATTAATTTTTTTTAAGCTTTAGTTTGGAGATCTTGTAACTTTTAATATAATAGAGGATAATTGTGATTCTAAAAAACTTAGCTATAAAATACTAATTTTGATAGATTTCAATTTTAATCCAGAAAGAATGAGTTATAGTGTTTATAGTGTTTGGTAATATTGATAAATTGTTATGATTAACAATAACAACTACATAGACATGACATCAAAATTTGCATTATTATTATTATTATTATTTTTCATAATTTATAGTTTTAAAATGTTTTAAAAATATTATATCATATATGCTTTCACTTAAGTTTAAATTTTGTTTGTTCTATAATTTTTTTTGTTAAATATGGGAGAAATATGTGAATTTTTTTTTAATAACAAACATGATGTTATTTAAAGAAAAAATTAGTGGGATTGAACTAATCAATTTGAAAATTTAGGATATATTTGTGTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGTAATTGGCTATGTGAACTAAATATACAAAATTAATTTTAATTTTTAAAGAATAAATTTGAAGATTGAAAATTTGTTGTGATTTAAAAGTGATTTTAACAAATTTATTCACAATCGTTCTTACTAAACACTCAAAACGACTAAGTACAGGTATGATAGTTATTTTGGAATTGTCCAAATCAGAATTTTGTCATATTCAAAATCATTCCGAACATGCCTTTACTCATGCAAAATCAATTTGATATTTAATTTTTTACTTTTAAATACAATTTTCATATCATCAAAATTGATTTTGAATTATAAAAAGCATATTTTGGAGCAAATTTGAAAATGATAAGATTGATTTTGTTAGTTTACAGAATCACTCCCAAACATGTTCTAAGTTTCTCTCAAAAGCAATCATAAACACAATCTTAAATTGGTATAGTTTTGATTTCTTTTAACTTTCAAAATACCTATTCTTAATTGGTTTTTTTTTTTTTTTTTTAAATAATTAAAGTTGAACTAAAGGTTATCTAACACTCAGGCAATAGATGTCACACAAAATGTTACAACAATTCAAGGAACATAAACACAATCATAGAAAGATAGCAGAAGAATAGAATACAAGGTTTGGTAATCTAATTTGGTGCAATGTCACCTACATCTGGGGGTAGTGTGACAACCCAAATCATTAAGGTAAATTCTACTATTAAGTTAATTTAAGTCATTATGCATTAAAAAGAAATTATATATATATATATATATTTATATGTATTTGTGTATTTATTTAGATTAAGGAGGAAAGTTTTAAAATTTGCATTGGTAGTGGTTGGTGAGACTTAGGTGGATTTAAGGAAATTTTTGGAATTGGCAAGGGATAATTTATTTTGGGGCAAATAAAATAAAATAAGTAGATTTGATTGGGTTGAAGTTTTAAATAGAGGAGATATTTTTATTTTGGGGAAAAGGGAAAGGAGAGTTAATGATTTAAGGAGGGGGAGGAATTAGAGTTTAGTTTAAACCCTCTTCGGTTTGCGTGCAGGAAAAGAAAAAAAAAAAAGAGAACTCTCTCTCCGCCGCCAAATTTTTTCCGCTGCCGCCTACCTTCTTTTTCCGTTCTTCCTCTCCACCGCCACGCTCTCTCTTTCCTCTGCCTCCGCCGTCTCTCTCTCTCTCTCTCTCTTTCTCAGTTGCTGCTCGTTTTTCCCGGAAGTTCACGCTCAGAATCACGTTGAGACTCCCGCTCTCACGCTCTCAGGTTCTCACTCTCTCGCTGACTATCGCTCTCACGCTCTCTCGCTCTCTTGCTCTCACGCTCCCCCGCTCTCACACTCGGAATCACGCTCCCCCTCGCCAGGATCACACTCTCACGCTCTCGGGCTCTCTCTCTCTCGCTGACTCTCCCCCTCTCGCTCTCTCGCTCGGCTTTTGCTCTTGCTCAGAATCTCGTTCTCGACTGCGATTAACTGCTTGCCTGACCGTCAGTCGCCGGATCAGTACTCCCTAAGTGAGTATCTTAAACCTAAGTAGGTTAGTGGCATATTTTGGTAAATATTTGAGAATACGAATTAATTGGTAAATCTTAATAGTGGTCTGCGATTGCTTTAGTTCGTAGGGTCAGAGGAAACTGCGAGTTTGGCCACGTTCGGGTAAGGACTCTCTCGAACGAACTTTGAGTTTACTTATGACAAGTTAAGCTTGATGAATAACTTAAGTTAGGGGAATTTTATTCCCAGTTTGTTCAGGAATTTTGCAAGAGTTGCAGTGTGGTTAGCTTTATGGATCAACCCTCAGGCAAGTGA

mRNA sequence

ATGGAGAATCTTACAAGCCTTCCTAGTAATCCTGATCACCAAAAAATTACCCAAATTCCCAACAAACCAACAATTGATCAAAACAAGCCTATCAAAGTGAAGTACATTTCTAGTCCCATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGTGCCATTGTTCAAAAGCTCACCGGCCAGCACTCCTCCCCTGATGATGCTTTTCATCAATCACTTCAAGAGTTTAACCAAGTTTTTTATCCCCCGACGTCGTCCCTGGCCGTGGCTTCTTTCGACCCTAAGGATTGCTATGCTTTTTCGTCCACCGGTCATGTCTTTGATCCAACCGGAGTCGCCGAAGGCCATTATTGGCGGGGTGAAATGGAAGTTGCTGCTCGTTTTTCCCGGAAGTTCACGCTCAGAATCACGTTGAGACTCCCGCTCTCACGCTCTCAGGTTCTCACTCTCTCGCTGACTATCGCTCTCACGCTCTCTCGCTCTCTTGCTCTCACGCTCCCCCGCTCTCACACTCGGAATCACGCTCCCCCTCGCCAGGATCACACTCTCACGCTCTCGGGCTCTCTCTCTCTCGCTGACTCTCCCCCTCTCGCTCTCTCGCTCGGCTTTTGCTCTTGCTCAGAATCTCGTTCTCGACTGCGATTAACTGCTTGCCTGACCTGGTCTGCGATTGCTTTAGTTCGTAGGGTCAGAGGAAACTGCGAGTTTGGCCACGTTCGGGAATTTTGCAAGAGTTGCAGTGTGGTTAGCTTTATGGATCAACCCTCAGGCAAGTGA

Coding sequence (CDS)

ATGGAGAATCTTACAAGCCTTCCTAGTAATCCTGATCACCAAAAAATTACCCAAATTCCCAACAAACCAACAATTGATCAAAACAAGCCTATCAAAGTGAAGTACATTTCTAGTCCCATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGTGCCATTGTTCAAAAGCTCACCGGCCAGCACTCCTCCCCTGATGATGCTTTTCATCAATCACTTCAAGAGTTTAACCAAGTTTTTTATCCCCCGACGTCGTCCCTGGCCGTGGCTTCTTTCGACCCTAAGGATTGCTATGCTTTTTCGTCCACCGGTCATGTCTTTGATCCAACCGGAGTCGCCGAAGGCCATTATTGGCGGGGTGAAATGGAAGTTGCTGCTCGTTTTTCCCGGAAGTTCACGCTCAGAATCACGTTGAGACTCCCGCTCTCACGCTCTCAGGTTCTCACTCTCTCGCTGACTATCGCTCTCACGCTCTCTCGCTCTCTTGCTCTCACGCTCCCCCGCTCTCACACTCGGAATCACGCTCCCCCTCGCCAGGATCACACTCTCACGCTCTCGGGCTCTCTCTCTCTCGCTGACTCTCCCCCTCTCGCTCTCTCGCTCGGCTTTTGCTCTTGCTCAGAATCTCGTTCTCGACTGCGATTAACTGCTTGCCTGACCTGGTCTGCGATTGCTTTAGTTCGTAGGGTCAGAGGAAACTGCGAGTTTGGCCACGTTCGGGAATTTTGCAAGAGTTGCAGTGTGGTTAGCTTTATGGATCAACCCTCAGGCAAGTGA

Protein sequence

MENLTSLPSNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQEFNQVFYPPTSSLAVASFDPKDCYAFSSTGHVFDPTGVAEGHYWRGEMEVAARFSRKFTLRITLRLPLSRSQVLTLSLTIALTLSRSLALTLPRSHTRNHAPPRQDHTLTLSGSLSLADSPPLALSLGFCSCSESRSRLRLTACLTWSAIALVRRVRGNCEFGHVREFCKSCSVVSFMDQPSGK
Homology
[Close]
BLAST of ClCG02G016900 vs. NCBI nr
Match: KAE8651551.1 (hypothetical protein Csa_019210 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 4.9e-33
Identity = 87/129 (67.44%), Postives = 98/129 (75.97%), Query Frame = 0 

Query: 1   MENLTSLPSNPDHQKITQIPNKPTID-QNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60
           MEN T+LPSN  H+K++Q+ NK TID QNKPIKVKYISSPMMVKANNESEFRAIVQKLTG
Sbjct: 1   MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60

Query: 61  QHSSPDDAFHQSLQEFNQVFY-PPTSSLAVASFDPKDCYAFSSTGHV-FDPTGVA-EGHY 120
           QHS   D   QS+Q+FN VFY PP SS    SFDPKDCY  S++G V FD      EG Y
Sbjct: 61  QHSPDHD--DQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRY 120

Query: 121 WRGEMEVAA 126
           WRGEME+ +
Sbjct: 121 WRGEMELGS 127

[Close]
BLAST of ClCG02G016900 vs. NCBI nr
Match: KAA0063579.1 (VQ motif-containing protein [Cucumis melo var. makuwa] >TYJ97906.1 VQ motif-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 3.9e-30
Identity = 83/130 (63.85%), Postives = 95/130 (73.08%), Query Frame = 0 

Query: 1   MENL-TSLPSNPDHQKITQIPNKPTI--DQNKPIKVKYISSPMMVKANNESEFRAIVQKL 60
           MENL T+LP++  H+K++Q  NKPT    QNKPIKVKYISSPMMVKANNESEFRAIVQKL
Sbjct: 1   MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKL 60

Query: 61  TGQHSSPDDA-FHQSLQEFNQVFY--PPTSSLAVASFDPKDCYAFSSTGHVFDP--TGVA 120
           TGQHS   DA F QS+Q+FN  FY  PP+SS    SFDP+DCY  +S   +FD       
Sbjct: 61  TGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDCYGSASGDVLFDDRIEDGD 120

Query: 121 EGHYWRGEME 123
           EG YWRGEME
Sbjct: 121 EGRYWRGEME 130

[Close]
BLAST of ClCG02G016900 vs. NCBI nr
Match: XP_038877668.1 (sigma factor binding protein 1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 136.0 bits (341), Expect = 4.7e-28
Identity = 71/98 (72.45%), Postives = 78/98 (79.59%), Query Frame = 0 

Query: 25  IDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQEFNQVFYPPTS 84
           +DQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQH SP DAF QS ++FNQVFYPP S
Sbjct: 1   MDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQH-SPHDAFDQSAEDFNQVFYPPPS 60

Query: 85  SLAVASFDPKDCYAFSSTGHVFDPTGVAEGHYWRGEME 123
           S+A  SFDPKDCYA +S   +FD         W+GEME
Sbjct: 61  SMAAPSFDPKDCYASASGDVLFD---------WQGEME 88

[Close]
BLAST of ClCG02G016900 vs. NCBI nr
Match: XP_022938305.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-23
Identity = 71/113 (62.83%), Postives = 83/113 (73.45%), Query Frame = 0 

Query: 1   MENLTSLPSNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQ 60
           MENL SLP++  H+K+     + T+  NKPIKVKYISSPMMVKANNE EFRAIVQKLTGQ
Sbjct: 1   MENLKSLPNHLRHEKLEASNYRATM-ANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQ 60

Query: 61  HSSPDDAFHQSLQEFNQVFYPPTSSLAVASFDPKDCYAFSSTGHVFDPTGVAE 114
           HS+ DDAF +S QEFN  F PP+S+  V SFD KDCY   S+   +DP GV E
Sbjct: 61  HSA-DDAFDRSPQEFNHAFCPPSST--VTSFDSKDCYDLVSS-DAYDPIGVGE 108

[Close]
BLAST of ClCG02G016900 vs. NCBI nr
Match: KAG6586326.1 (Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116.3 bits (290), Expect = 3.9e-22
Identity = 69/113 (61.06%), Postives = 82/113 (72.57%), Query Frame = 0 

Query: 1   MENLTSLPSNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQ 60
           MENL SLP++  H+K+     + T+  NKPIKVKYISSPMMVKA+NE EFRAIVQKLTGQ
Sbjct: 1   MENLKSLPNHLRHEKLEASNYRATM-ANKPIKVKYISSPMMVKASNEFEFRAIVQKLTGQ 60

Query: 61  HSSPDDAFHQSLQEFNQVFYPPTSSLAVASFDPKDCYAFSSTGHVFDPTGVAE 114
           HS+ DDAF +S QEFN  F PP+S+  V SFD KDCY   S+   +DP  V E
Sbjct: 61  HSA-DDAFDRSPQEFNHAFCPPSST--VTSFDSKDCYDLVSS-DAYDPIRVGE 108

[Close]
BLAST of ClCG02G016900 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.7e-04
Identity = 38/103 (36.89%), Postives = 54/103 (52.43%), Query Frame = 0 

Query: 22  KPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS---SPDDAFHQSLQEFNQV 81
           K T   NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ +    P+  +  S  + N  
Sbjct: 31  KKTTSTNKPIKVRYISNPMRVQ-TCASKFRELVQELTGQDAVDLQPEPIYSPSSDDHN-- 90

Query: 82  FYPPTSSLA--VASFDP-----KDCYAFSSTGHVFDPTGVAEG 115
             PP  +LA  V   +P      DCY   +   +F P  ++ G
Sbjct: 91  LSPPAENLAPRVLHQEPFGERDSDCYEPLNAEDMFLPDQMSAG 130

[Close]
BLAST of ClCG02G016900 vs. ExPASy TrEMBL
Match: A0A0A0LFF9 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010160 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.4e-33
Identity = 87/129 (67.44%), Postives = 98/129 (75.97%), Query Frame = 0 

Query: 1   MENLTSLPSNPDHQKITQIPNKPTID-QNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60
           MEN T+LPSN  H+K++Q+ NK TID QNKPIKVKYISSPMMVKANNESEFRAIVQKLTG
Sbjct: 1   MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60

Query: 61  QHSSPDDAFHQSLQEFNQVFY-PPTSSLAVASFDPKDCYAFSSTGHV-FDPTGVA-EGHY 120
           QHS   D   QS+Q+FN VFY PP SS    SFDPKDCY  S++G V FD      EG Y
Sbjct: 61  QHSPDHD--DQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRY 120

Query: 121 WRGEMEVAA 126
           WRGEME+ +
Sbjct: 121 WRGEMELGS 127

[Close]
BLAST of ClCG02G016900 vs. ExPASy TrEMBL
Match: A0A5A7VDH6 (VQ motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001220 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.9e-30
Identity = 83/130 (63.85%), Postives = 95/130 (73.08%), Query Frame = 0 

Query: 1   MENL-TSLPSNPDHQKITQIPNKPTI--DQNKPIKVKYISSPMMVKANNESEFRAIVQKL 60
           MENL T+LP++  H+K++Q  NKPT    QNKPIKVKYISSPMMVKANNESEFRAIVQKL
Sbjct: 1   MENLITTLPTDFHHRKVSQNSNKPTTIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKL 60

Query: 61  TGQHSSPDDA-FHQSLQEFNQVFY--PPTSSLAVASFDPKDCYAFSSTGHVFDP--TGVA 120
           TGQHS   DA F QS+Q+FN  FY  PP+SS    SFDP+DCY  +S   +FD       
Sbjct: 61  TGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDCYGSASGDVLFDDRIEDGD 120

Query: 121 EGHYWRGEME 123
           EG YWRGEME
Sbjct: 121 EGRYWRGEME 130

[Close]
BLAST of ClCG02G016900 vs. ExPASy TrEMBL
Match: A0A6J1FJE0 (sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111444440 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.8e-24
Identity = 71/113 (62.83%), Postives = 83/113 (73.45%), Query Frame = 0 

Query: 1   MENLTSLPSNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQ 60
           MENL SLP++  H+K+     + T+  NKPIKVKYISSPMMVKANNE EFRAIVQKLTGQ
Sbjct: 1   MENLKSLPNHLRHEKLEASNYRATM-ANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQ 60

Query: 61  HSSPDDAFHQSLQEFNQVFYPPTSSLAVASFDPKDCYAFSSTGHVFDPTGVAE 114
           HS+ DDAF +S QEFN  F PP+S+  V SFD KDCY   S+   +DP GV E
Sbjct: 61  HSA-DDAFDRSPQEFNHAFCPPSST--VTSFDSKDCYDLVSS-DAYDPIGVGE 108

[Close]
BLAST of ClCG02G016900 vs. ExPASy TrEMBL
Match: A0A6J1CME4 (sigma factor binding protein 1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111012954 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.6e-13
Identity = 55/98 (56.12%), Postives = 65/98 (66.33%), Query Frame = 0 

Query: 29  KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSL----QEFNQVFYPPTS 88
           KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ +SPDDAF        +E N  FYPP  
Sbjct: 3   KPIKVKYISNPMMVKANSESEFREIVQRLTGQ-NSPDDAFESPAFGGEEELNHAFYPPPP 62

Query: 89  SLAVASFDPKDCYAFSSTGHVFDPTGVAEGHYWRGEME 123
           S AV S DPK  Y   S G V +   + EG + + EM+
Sbjct: 63  STAV-STDPKGYYGLVS-GKVGE---LGEGCFRQDEMQ 94

[Close]
BLAST of ClCG02G016900 vs. ExPASy TrEMBL
Match: A0A1Q3BFQ5 (VQ domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_10278 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.5e-07
Identity = 49/121 (40.50%), Postives = 68/121 (56.20%), Query Frame = 0 

Query: 12  DH--QKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDD--- 71
           DH  QK+T+      + +N PIKV +ISSPM+VKA+N SEFRAIVQ+LTGQ+S+ +D   
Sbjct: 12  DHKSQKLTK------VKKNDPIKVTHISSPMLVKASNPSEFRAIVQELTGQYSNINDFGD 71

Query: 72  --AFHQSLQEFNQVFY---PPTSSLAVASFDPKDCYAFSSTGHVFDPTGVAEGHYWRGEM 123
             A   + +E NQV Y   PP      A+ D ++    SS+     P    +G  W  + 
Sbjct: 72  LYATSNTYEEANQVSYHKAPPQ-----ANIDTENSDTISSS---ISPLEFNQGFVWGDDS 118

[Close]
BLAST of ClCG02G016900 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 48.1 bits (113), Expect = 1.2e-05
Identity = 38/103 (36.89%), Postives = 54/103 (52.43%), Query Frame = 0 

Query: 22  KPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS---SPDDAFHQSLQEFNQV 81
           K T   NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ +    P+  +  S  + N  
Sbjct: 31  KKTTSTNKPIKVRYISNPMRVQ-TCASKFRELVQELTGQDAVDLQPEPIYSPSSDDHN-- 90

Query: 82  FYPPTSSLA--VASFDP-----KDCYAFSSTGHVFDPTGVAEG 115
             PP  +LA  V   +P      DCY   +   +F P  ++ G
Sbjct: 91  LSPPAENLAPRVLHQEPFGERDSDCYEPLNAEDMFLPDQMSAG 130

The following BLAST results are available for this feature:
BLAST of ClCG02G016900 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8651551.14.9e-3367.44hypothetical protein Csa_019210 [Cucumis sativus][more]
KAA0063579.13.9e-3063.85VQ motif-containing protein [Cucumis melo var. makuwa] >TYJ97906.1 VQ motif-cont... [more]
XP_038877668.14.7e-2872.45sigma factor binding protein 1, chloroplastic-like [Benincasa hispida][more]
XP_022938305.11.2e-2362.83sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata][more]
KAG6586326.13.9e-2261.06Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma s... [more]
BLAST of ClCG02G016900 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LDH11.7e-0436.89Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
BLAST of ClCG02G016900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFF92.4e-3367.44VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010160 PE=4 SV=... [more]
A0A5A7VDH61.9e-3063.85VQ motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A6J1FJE05.8e-2462.83sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662... [more]
A0A6J1CME44.6e-1356.12sigma factor binding protein 1, chloroplastic-like OS=Momordica charantia OX=367... [more]
A0A1Q3BFQ56.5e-0740.50VQ domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_10278... [more]
BLAST of ClCG02G016900 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G56710.11.2e-0536.89sigma factor binding protein 1 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 36..64
e-value: 1.5E-8
score: 34.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availablePANTHERPTHR33624:SF17VQ MOTIF PROTEINcoord: 18..74
IPR039335Sigma factor binding protein 1/2PANTHERPTHR33624SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTICcoord: 18..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G016900.2ClCG02G016900.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051091 positive regulation of DNA-binding transcription factor activity