ClCG02G012980 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG02G012980
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr02: 26779986 .. 26780351 (-)
RNA-Seq ExpressionClCG02G012980
SyntenyClCG02G012980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCAAATGGCTTCAAAAGTGGAAAGCTTTCAAAGCAACTAAAATGGGCAGAAGCAGATGCTAAGTTTTTGAGAAAACTAAGCTTAAACAAGAACAAGACAAATGAGATAGCATCAGCTTCTTCCATTTTTGGGTTTGAAACAAATAGGAGTAATGATATTATTAACTATTCGAGGCAAAGGTATTTGAGAAGCTACAAGTTCAATGATGATATTGAGGAGGAAAAAGCGAGTCATATTGACAAGGCAAAGAAGTGGTTCAACTTAAAACCAAGAGCAATGTCATGTAATTGCAATAGTATTGGAAAGCATTCATGTAATAAGGGCATTTTGAAGTTCTTAATGTGCTGCAGAGTTGATTGA

mRNA sequence

ATGGATTCAAATGGCTTCAAAAGTGGAAAGCTTTCAAAGCAACTAAAATGGGCAGAAGCAGATGCTAAGTTTTTGAGAAAACTAAGCTTAAACAAGAACAAGACAAATGAGATAGCATCAGCTTCTTCCATTTTTGGGTTTGAAACAAATAGGAGTAATGATATTATTAACTATTCGAGGCAAAGGTATTTGAGAAGCTACAAGTTCAATGATGATATTGAGGAGGAAAAAGCGAGTCATATTGACAAGGCAAAGAAGTGGTTCAACTTAAAACCAAGAGCAATGTCATGTAATTGCAATAGTATTGGAAAGCATTCATGTAATAAGGGCATTTTGAAGTTCTTAATGTGCTGCAGAGTTGATTGA

Coding sequence (CDS)

ATGGATTCAAATGGCTTCAAAAGTGGAAAGCTTTCAAAGCAACTAAAATGGGCAGAAGCAGATGCTAAGTTTTTGAGAAAACTAAGCTTAAACAAGAACAAGACAAATGAGATAGCATCAGCTTCTTCCATTTTTGGGTTTGAAACAAATAGGAGTAATGATATTATTAACTATTCGAGGCAAAGGTATTTGAGAAGCTACAAGTTCAATGATGATATTGAGGAGGAAAAAGCGAGTCATATTGACAAGGCAAAGAAGTGGTTCAACTTAAAACCAAGAGCAATGTCATGTAATTGCAATAGTATTGGAAAGCATTCATGTAATAAGGGCATTTTGAAGTTCTTAATGTGCTGCAGAGTTGATTGA

Protein sequence

MDSNGFKSGKLSKQLKWAEADAKFLRKLSLNKNKTNEIASASSIFGFETNRSNDIINYSRQRYLRSYKFNDDIEEEKASHIDKAKKWFNLKPRAMSCNCNSIGKHSCNKGILKFLMCCRVD
Homology
BLAST of ClCG02G012980 vs. NCBI nr
Match: KAG6605255.1 (hypothetical protein SDJN03_02572, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.2 bits (313), Expect = 3.9e-25
Identity = 70/122 (57.38%), Postives = 87/122 (71.31%), Query Frame = 0

Query: 1   MDSNGFKSGKLSKQLKWAEADAKFLRKLSLNKNKTNEIAS----ASSIFGFETNRSNDII 60
           MD  G +S KL  Q KWAEADA FL++LSLNKN T EI+S     SS+ GFETNR+N+I 
Sbjct: 23  MDIKGVESAKLCNQNKWAEADATFLQRLSLNKNMT-EISSYSLHCSSLLGFETNRNNEIF 82

Query: 61  NYSRQRYLRSYKFNDDIEEEKASHIDKAKKWFNLKPRAMSCNCNSIGKHSCNKGILKFLM 119
            YSRQR+LRSY F+  +EE+K     KA+KWFNLK R  S + N++GK S N GI KF++
Sbjct: 83  KYSRQRFLRSYTFS--VEEKKTKRFGKARKWFNLKSRPKSTSSNNVGKSSYN-GIFKFML 140

BLAST of ClCG02G012980 vs. NCBI nr
Match: XP_023006822.1 (uncharacterized protein LOC111499491 [Cucurbita maxima])

HSP 1 Score: 124.4 bits (311), Expect = 6.7e-25
Identity = 70/122 (57.38%), Postives = 87/122 (71.31%), Query Frame = 0

Query: 1   MDSNGFKSGKLSKQLKWAEADAKFLRKLSLNKNKTNEIASA----SSIFGFETNRSNDII 60
           MD  G  S KL  Q KWAEADA FL++LSLNKN T EI+S+    SS+ GFETNR+N+I 
Sbjct: 253 MDIKGVGSAKLCNQNKWAEADATFLQRLSLNKNMT-EISSSSSHCSSLLGFETNRNNEIF 312

Query: 61  NYSRQRYLRSYKFNDDIEEEKASHIDKAKKWFNLKPRAMSCNCNSIGKHSCNKGILKFLM 119
            YSRQR+LRSY F+  +EE+K     KA+KWFNLK R  S + N++GK S N GIL F++
Sbjct: 313 KYSRQRFLRSYTFS--VEEKKTKRFGKARKWFNLKSRTKSTSSNNVGKSSYN-GILNFML 370

BLAST of ClCG02G012980 vs. NCBI nr
Match: KGN62030.1 (hypothetical protein Csa_006081 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-18
Identity = 64/109 (58.72%), Postives = 72/109 (66.06%), Query Frame = 0

Query: 3   SNGFKSGKL-SKQLKWAEADAKFLRKLSLNKN---------KTNEIASASSIFGFETNRS 62
           SNGF  GK+ SKQ KWAEADA FLRKLSLNKN         K   +  +SS+FGFE  RS
Sbjct: 5   SNGFAIGKVTSKQQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFGFEKYRS 64

Query: 63  NDIINYSRQRYLRSYKFNDDIEE------EKASHIDKAKKWFNLKPRAM 96
           NDIINYSRQRYLRSYKFNDD +E      +K S  +K   +F LK  AM
Sbjct: 65  NDIINYSRQRYLRSYKFNDDHKEDDVDQVQKTSPFEKVINFFKLKSIAM 113

BLAST of ClCG02G012980 vs. NCBI nr
Match: KAE7999862.1 (hypothetical protein FH972_004251 [Carpinus fangiana])

HSP 1 Score: 55.5 bits (132), Expect = 3.8e-04
Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 0

Query: 12  SKQLKWAEADAKFLRKLSLNKNKTNEIASASSIFGFETNRSNDIINYS-----RQRYLRS 71
           +K L+WAEADA+FL+++S+ K KT E  +  S+F  +++   D  +Y+     RQRYLRS
Sbjct: 22  AKLLQWAEADAEFLKRVSM-KEKT-ETQTGRSLFDSQSSTPVDHESYASSPSPRQRYLRS 81

Query: 72  YKFNDDIEEEKASHIDKAKKWF---NLKPRAMSCNCNSIGKHSCNKGILKFLMCCRV 121
           Y F      +K +  DK KKWF     K R+ + +C+ +      +G+ +FL  C V
Sbjct: 82  YTF----LRKKETVADKTKKWFKETTTKRRSDTGSCSFL------EGVFRFLFACVV 126

BLAST of ClCG02G012980 vs. ExPASy TrEMBL
Match: A0A6J1KWW2 (uncharacterized protein LOC111499491 OS=Cucurbita maxima OX=3661 GN=LOC111499491 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.2e-25
Identity = 70/122 (57.38%), Postives = 87/122 (71.31%), Query Frame = 0

Query: 1   MDSNGFKSGKLSKQLKWAEADAKFLRKLSLNKNKTNEIASA----SSIFGFETNRSNDII 60
           MD  G  S KL  Q KWAEADA FL++LSLNKN T EI+S+    SS+ GFETNR+N+I 
Sbjct: 253 MDIKGVGSAKLCNQNKWAEADATFLQRLSLNKNMT-EISSSSSHCSSLLGFETNRNNEIF 312

Query: 61  NYSRQRYLRSYKFNDDIEEEKASHIDKAKKWFNLKPRAMSCNCNSIGKHSCNKGILKFLM 119
            YSRQR+LRSY F+  +EE+K     KA+KWFNLK R  S + N++GK S N GIL F++
Sbjct: 313 KYSRQRFLRSYTFS--VEEKKTKRFGKARKWFNLKSRTKSTSSNNVGKSSYN-GILNFML 370

BLAST of ClCG02G012980 vs. ExPASy TrEMBL
Match: A0A0A0LJK1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287120 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 7.7e-19
Identity = 64/109 (58.72%), Postives = 72/109 (66.06%), Query Frame = 0

Query: 3   SNGFKSGKL-SKQLKWAEADAKFLRKLSLNKN---------KTNEIASASSIFGFETNRS 62
           SNGF  GK+ SKQ KWAEADA FLRKLSLNKN         K   +  +SS+FGFE  RS
Sbjct: 5   SNGFAIGKVTSKQQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFGFEKYRS 64

Query: 63  NDIINYSRQRYLRSYKFNDDIEE------EKASHIDKAKKWFNLKPRAM 96
           NDIINYSRQRYLRSYKFNDD +E      +K S  +K   +F LK  AM
Sbjct: 65  NDIINYSRQRYLRSYKFNDDHKEDDVDQVQKTSPFEKVINFFKLKSIAM 113

BLAST of ClCG02G012980 vs. ExPASy TrEMBL
Match: A0A5N6QKI4 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_004251 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-04
Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 0

Query: 12  SKQLKWAEADAKFLRKLSLNKNKTNEIASASSIFGFETNRSNDIINYS-----RQRYLRS 71
           +K L+WAEADA+FL+++S+ K KT E  +  S+F  +++   D  +Y+     RQRYLRS
Sbjct: 22  AKLLQWAEADAEFLKRVSM-KEKT-ETQTGRSLFDSQSSTPVDHESYASSPSPRQRYLRS 81

Query: 72  YKFNDDIEEEKASHIDKAKKWF---NLKPRAMSCNCNSIGKHSCNKGILKFLMCCRV 121
           Y F      +K +  DK KKWF     K R+ + +C+ +      +G+ +FL  C V
Sbjct: 82  YTF----LRKKETVADKTKKWFKETTTKRRSDTGSCSFL------EGVFRFLFACVV 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6605255.13.9e-2557.38hypothetical protein SDJN03_02572, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023006822.16.7e-2557.38uncharacterized protein LOC111499491 [Cucurbita maxima][more]
KGN62030.11.6e-1858.72hypothetical protein Csa_006081 [Cucumis sativus][more]
KAE7999862.13.8e-0436.75hypothetical protein FH972_004251 [Carpinus fangiana][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1KWW23.2e-2557.38uncharacterized protein LOC111499491 OS=Cucurbita maxima OX=3661 GN=LOC111499491... [more]
A0A0A0LJK17.7e-1958.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287120 PE=4 SV=1[more]
A0A5N6QKI41.8e-0436.75Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_004251 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G012980.1ClCG02G012980.1mRNA