ClCG02G012315 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G012315
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	F-box protein
Location	CG_Chr02: 25687194 .. 25688511 (-)
RNA-Seq Expression	ClCG02G012315
Synteny	ClCG02G012315

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCAATACAGCGAAGTTCATGCGAGAAGGAGACAAAGATCAGAGCGGCATCGTGGCGAGCTCCTAGATTCATGAAAAACTCATCGCTCGTATAATTTGGATATTTTTGAAGCTCAGAATCTTGACATGGTGGCGATATCATGTCAACATCCTCTCTTTCTCTCTCTTCTTTGAATCTTCCCTTTGCTTTTTTATGCTTCTCTTCTGCCAAAAGTAACGAATTCAACTCGTGAATTTCCTCCACCCCTTTTCGTCTTTCAACGCCACGAACTTCTTCTTTTTCCAAATTCATATTCCAAGTGGACAGCGGAGGATCGGGATGGATTCGGCTGCTTTGTGGTCGGTAGGGATGGAGTTGGAGCCGGAGATTGATCGCTTGCCGATTGACCTACTGGCTCATATTTTTGCCATGATCACCTCCTTCACCGATTTGGCTCAGTAATTCATTCTTAATTTCTGTTTTATGAGTGTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTGTTTTATGAGTTTTTTTTTTTTTTTTTTTTTGCTTCAATTGCTCTGGTTCTTGTTCCCTAATTTTTGAGGGTTTATGCGATTCCGGAAAAACACAGGGCGTGCGGCGTATGTAGGAAATGGAAGGAAGGAGTTAAGCTGTCTCTTGGTAGGAGAAAGAGTTTGAGCTTTGCTGGTTGGAAGATGGATGATAACTCCACTGCTCGTCTTATTCGCCATGCCTACAGTCTTCGAGAGCTCGACATGTAA

mRNA sequence

ATGAATTCAATACAGCGAAGTTCATGCGAGAAGGAGACAAAGATCAGAGCGGCATCGTGGCGAGCTCCTAGATTCATGAAAAACTCATCGCTCCGGAGGATCGGGATGGATTCGGCTGCTTTGTGGTCGGTAGGGATGGAGTTGGAGCCGGAGATTGATCGCTTGCCGATTGACCTACTGGCTCATATTTTTGCCATGATCACCTCCTTCACCGATTTGGCTCAGGCGTGCGGCGTATGTAGGAAATGGAAGGAAGGAGTTAAGCTGTCTCTTGGTAGGAGAAAGAGTTTGAGCTTTGCTGGTTGGAAGATGGATGATAACTCCACTGCTCGTCTTATTCGCCATGCCTACAGTCTTCGAGAGCTCGACATGTAA

Coding sequence (CDS)

ATGAATTCAATACAGCGAAGTTCATGCGAGAAGGAGACAAAGATCAGAGCGGCATCGTGGCGAGCTCCTAGATTCATGAAAAACTCATCGCTCCGGAGGATCGGGATGGATTCGGCTGCTTTGTGGTCGGTAGGGATGGAGTTGGAGCCGGAGATTGATCGCTTGCCGATTGACCTACTGGCTCATATTTTTGCCATGATCACCTCCTTCACCGATTTGGCTCAGGCGTGCGGCGTATGTAGGAAATGGAAGGAAGGAGTTAAGCTGTCTCTTGGTAGGAGAAAGAGTTTGAGCTTTGCTGGTTGGAAGATGGATGATAACTCCACTGCTCGTCTTATTCGCCATGCCTACAGTCTTCGAGAGCTCGACATGTAA

Protein sequence

MNSIQRSSCEKETKIRAASWRAPRFMKNSSLRRIGMDSAALWSVGMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRKSLSFAGWKMDDNSTARLIRHAYSLRELDM

Homology

[Close]

BLAST of ClCG02G012315 vs. NCBI nr
Match: XP_004149695.1 (F-box protein At5g67140 [Cucumis sativus] >KGN61981.1 hypothetical protein Csa_006050 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-40
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 36  MDSAALWSVGMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 95
           MDSA +WSV MELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK
Sbjct: 4   MDSAVVWSVEMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 63

Query: 96  SLSFAGWKMDDNSTARLIRHAYSLRELDM 125
           SLSFAGWKMDDNSTARLIRHAYSLRELD+
Sbjct: 64  SLSFAGWKMDDNSTARLIRHAYSLRELDI 92

[Close]

BLAST of ClCG02G012315 vs. NCBI nr
Match: XP_008457759.1 (PREDICTED: F-box protein At5g67140 [Cucumis melo] >XP_008457760.1 PREDICTED: F-box protein At5g67140 [Cucumis melo] >XP_016902142.1 PREDICTED: F-box protein At5g67140 [Cucumis melo] >XP_016902143.1 PREDICTED: F-box protein At5g67140 [Cucumis melo] >KAA0045774.1 F-box protein [Cucumis melo var. makuwa] >TYJ99508.1 F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 174.5 bits (441), Expect = 5.8e-40
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 36  MDSAALWSVGMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 95
           MDS  +WSV MELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK
Sbjct: 1   MDSDVVWSVEMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 60

Query: 96  SLSFAGWKMDDNSTARLIRHAYSLRELDM 125
           SLSFAGWKMDDNSTARLIRHAYSLRELD+
Sbjct: 61  SLSFAGWKMDDNSTARLIRHAYSLRELDI 89

[Close]

BLAST of ClCG02G012315 vs. NCBI nr
Match: KAG6571264.1 (F-box protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172.2 bits (435), Expect = 2.9e-39
Identity = 81/89 (91.01%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 36  MDSAALWSVGMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 95
           MDSAA+W+VGME EPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGR++
Sbjct: 32  MDSAAVWAVGMESEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRKE 91

Query: 96  SLSFAGWKMDDNSTARLIRHAYSLRELDM 125
           SLSFAGWKMDD+STARLIRHAYSLR+LD+
Sbjct: 92  SLSFAGWKMDDDSTARLIRHAYSLRDLDI 120

[Close]

BLAST of ClCG02G012315 vs. NCBI nr
Match: KAG7015628.1 (F-box protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172.2 bits (435), Expect = 2.9e-39
Identity = 81/89 (91.01%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 36  MDSAALWSVGMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 95
           MDSAA+W+VGME EPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGR++
Sbjct: 23  MDSAAVWAVGMESEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRKE 82

Query: 96  SLSFAGWKMDDNSTARLIRHAYSLRELDM 125
           SLSFAGWKMDD+STARLIRHAYSLR+LD+
Sbjct: 83  SLSFAGWKMDDDSTARLIRHAYSLRDLDI 111

[Close]

BLAST of ClCG02G012315 vs. NCBI nr
Match: XP_022927967.1 (F-box protein At5g67140-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 171.8 bits (434), Expect = 3.7e-39
Identity = 80/89 (89.89%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 36  MDSAALWSVGMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 95
           MDSAA+W+VGM+ EPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGR++
Sbjct: 10  MDSAAVWAVGMDFEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRKE 69

Query: 96  SLSFAGWKMDDNSTARLIRHAYSLRELDM 125
           SLSFAGWKMDD+STARLIRHAYSLR+LD+
Sbjct: 70  SLSFAGWKMDDDSTARLIRHAYSLRDLDI 98

[Close]

BLAST of ClCG02G012315 vs. ExPASy Swiss-Prot
Match: Q9FH99 (F-box protein At5g67140 OS=Arabidopsis thaliana OX=3702 GN=At5g67140 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.7e-23
Identity = 49/79 (62.03%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 46  MELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRKSLSFAGWKMD 105
           M+ E  IDRLP+DLLA+IF++ TSFT LAQA GVC+KW++ V  S+ RR++LSFAGWKMD
Sbjct: 1   MDEEAAIDRLPLDLLAYIFSLATSFTVLAQASGVCKKWRKAVNQSMARRETLSFAGWKMD 60

Query: 106 DNSTARLIRHAYSLRELDM 125
           D+ST+RL+  A++L+ELD+
Sbjct: 61  DDSTSRLVHLAFNLKELDI 79

[Close]

BLAST of ClCG02G012315 vs. ExPASy TrEMBL
Match: A0A0A0LPU5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G279180 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.6e-41
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 36  MDSAALWSVGMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 95
           MDSA +WSV MELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK
Sbjct: 4   MDSAVVWSVEMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 63

Query: 96  SLSFAGWKMDDNSTARLIRHAYSLRELDM 125
           SLSFAGWKMDDNSTARLIRHAYSLRELD+
Sbjct: 64  SLSFAGWKMDDNSTARLIRHAYSLRELDI 92

[Close]

BLAST of ClCG02G012315 vs. ExPASy TrEMBL
Match: A0A1S4E1P2 (F-box protein At5g67140 OS=Cucumis melo OX=3656 GN=LOC103497375 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.8e-40
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 36  MDSAALWSVGMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 95
           MDS  +WSV MELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK
Sbjct: 1   MDSDVVWSVEMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 60

Query: 96  SLSFAGWKMDDNSTARLIRHAYSLRELDM 125
           SLSFAGWKMDDNSTARLIRHAYSLRELD+
Sbjct: 61  SLSFAGWKMDDNSTARLIRHAYSLRELDI 89

[Close]

BLAST of ClCG02G012315 vs. ExPASy TrEMBL
Match: A0A5D3BMX7 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00750 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.8e-40
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 36  MDSAALWSVGMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 95
           MDS  +WSV MELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK
Sbjct: 1   MDSDVVWSVEMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 60

Query: 96  SLSFAGWKMDDNSTARLIRHAYSLRELDM 125
           SLSFAGWKMDDNSTARLIRHAYSLRELD+
Sbjct: 61  SLSFAGWKMDDNSTARLIRHAYSLRELDI 89

[Close]

BLAST of ClCG02G012315 vs. ExPASy TrEMBL
Match: A0A6J1EIZ0 (F-box protein At5g67140-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111434817 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.8e-39
Identity = 80/89 (89.89%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 36  MDSAALWSVGMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 95
           MDSAA+W+VGM+ EPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGR++
Sbjct: 23  MDSAAVWAVGMDFEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRKE 82

Query: 96  SLSFAGWKMDDNSTARLIRHAYSLRELDM 125
           SLSFAGWKMDD+STARLIRHAYSLR+LD+
Sbjct: 83  SLSFAGWKMDDDSTARLIRHAYSLRDLDI 111

[Close]

BLAST of ClCG02G012315 vs. ExPASy TrEMBL
Match: A0A6J1EIM3 (F-box protein At5g67140-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111434817 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.8e-39
Identity = 80/89 (89.89%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 36  MDSAALWSVGMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 95
           MDSAA+W+VGM+ EPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGR++
Sbjct: 10  MDSAAVWAVGMDFEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRKE 69

Query: 96  SLSFAGWKMDDNSTARLIRHAYSLRELDM 125
           SLSFAGWKMDD+STARLIRHAYSLR+LD+
Sbjct: 70  SLSFAGWKMDDDSTARLIRHAYSLRDLDI 98

[Close]

BLAST of ClCG02G012315 vs. TAIR 10
Match: AT5G67140.1 (F-box/RNI-like superfamily protein )

HSP 1 Score: 108.2 bits (269), Expect = 4.7e-24
Identity = 49/79 (62.03%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 46  MELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRKSLSFAGWKMD 105
           M+ E  IDRLP+DLLA+IF++ TSFT LAQA GVC+KW++ V  S+ RR++LSFAGWKMD
Sbjct: 1   MDEEAAIDRLPLDLLAYIFSLATSFTVLAQASGVCKKWRKAVNQSMARRETLSFAGWKMD 60

Query: 106 DNSTARLIRHAYSLRELDM 125
           D+ST+RL+  A++L+ELD+
Sbjct: 61  DDSTSRLVHLAFNLKELDI 79

The following BLAST results are available for this feature:

BLAST of ClCG02G012315 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149695.1	1.2e-40	95.51	F-box protein At5g67140 [Cucumis sativus] >KGN61981.1 hypothetical protein Csa_0...	[more]
XP_008457759.1	5.8e-40	94.38	PREDICTED: F-box protein At5g67140 [Cucumis melo] >XP_008457760.1 PREDICTED: F-b...	[more]
KAG6571264.1	2.9e-39	91.01	F-box protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7015628.1	2.9e-39	91.01	F-box protein [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022927967.1	3.7e-39	89.89	F-box protein At5g67140-like isoform X2 [Cucurbita moschata]	[more]

BLAST of ClCG02G012315 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FH99	6.7e-23	62.03	F-box protein At5g67140 OS=Arabidopsis thaliana OX=3702 GN=At5g67140 PE=2 SV=1	[more]

BLAST of ClCG02G012315 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPU5	5.6e-41	95.51	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G279180 PE=4 ...	[more]
A0A1S4E1P2	2.8e-40	94.38	F-box protein At5g67140 OS=Cucumis melo OX=3656 GN=LOC103497375 PE=4 SV=1	[more]
A0A5D3BMX7	2.8e-40	94.38	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00750 ...	[more]
A0A6J1EIZ0	1.8e-39	89.89	F-box protein At5g67140-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1EIM3	1.8e-39	89.89	F-box protein At5g67140-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of ClCG02G012315 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G67140.1	4.7e-24	62.03	F-box/RNI-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 52..85 e-value: 7.8E-7 score: 28.9
None	No IPR available	GENE3D	1.20.1280.50		coord: 53..90 e-value: 3.5E-6 score: 28.8
None	No IPR available	PANTHER	PTHR16134:SF117	SUBFAMILY NOT NAMED	coord: 34..124
None	No IPR available	PANTHER	PTHR16134	F-BOX/TPR REPEAT PROTEIN POF3	coord: 34..124
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 51..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G012315.1	ClCG02G012315.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding