ClCG02G011840 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G011840
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Poly(A)-specific ribonuclease
Location	CG_Chr02: 24983844 .. 24984776 (-)
RNA-Seq Expression	ClCG02G011840
Synteny	ClCG02G011840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGAAGAAATCGAGCACCTCCGAGAAGAGAAAAGCCTTTGATCCGACAAGTTTGGGCTTCGAATTTCGATTCCGAAATCTCCAAATTCGACAAATGTCTTCAATTTCATTCCATTCTGTCTATCGACACAGAATTTCCTGGGTTTATTACAAAATCCCCTTGGGGTTCGACTGAAGAAGAGATATATGAAGATTTCCGATCCAATGTAAACCAAACCAAATTGATTCAACTGGGTATTACGGCTTCTGATAATTCGGGACAAATCGGCGGTACATGGGAGTTCAATTTCTCCGATTTCGACCCACAATCCGACGCTCATGGCCCTTCCTCTGTTTCGTTTCTGGAAGACAACGGCATGGATTTCCAAAAACTGAAGAAAGACGGAATACCCATCACATTATTCACCGTAAATTTTTTGAGCATCATACGAAAACATAATGTTTTCAGATGGGTTACCTTCCATGGGTTGTACGATATCGGGTATTTGATCAAAGCCATGGGTTTAATCGCCATCTTGCCGGAATCAATGGAGGAATTCGCGACGGTGGTGGTGGAGGGAGTGGGAATCGTGAGGGATTTGAAACATATGTCTCGATTTTGTGAGGGATTGGAAGATGGGAAACTTGGGCTGGAAAGATTAGGGCAATTGCTCAATCAAAAACGGTATGGATGGAAGCATAATGCTGGATCGGATAGTTTGCTTACGGCTTCTTCCCATTTGGAAATGATGGAACGATTTGGCATGGATCCAGGAATTTGTGATGGCTTTTTGTATGGCTTTTCGAATAAGCTTGAATCCATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGGTTTATCATCATCCCAAGATGATTCGATTTGGTCAAATTCCATGGTCAATCCCACTTTATTGTTATACTCCTTCTTATTACATTGCTTATTAA

mRNA sequence

ATGGGTCGAAGAAATCGAGCACCTCCGAGAAGAGAAAAGCCTTTGATCCGACAAGTTTGGGCTTCGAATTTCGATTCCGAAATCTCCAAATTCGACAAATGTCTTCAATTTCATTCCATTCTGTCTATCGACACAGAATTTCCTGGGTTTATTACAAAATCCCCTTGGGGTTCGACTGAAGAAGAGATATATGAAGATTTCCGATCCAATGTAAACCAAACCAAATTGATTCAACTGGGTATTACGGCTTCTGATAATTCGGGACAAATCGGCGGTACATGGGAGTTCAATTTCTCCGATTTCGACCCACAATCCGACGCTCATGGCCCTTCCTCTGTTTCGTTTCTGGAAGACAACGGCATGGATTTCCAAAAACTGAAGAAAGACGGAATACCCATCACATTATTCACCGTAAATTTTTTGAGCATCATACGAAAACATAATGTTTTCAGATGGGTTACCTTCCATGGGTTGTACGATATCGGGTATTTGATCAAAGCCATGGGTTTAATCGCCATCTTGCCGGAATCAATGGAGGAATTCGCGACGGTGGTGGTGGAGGGAGTGGGAATCGTGAGGGATTTGAAACATATGTCTCGATTTTGTGAGGGATTGGAAGATGGGAAACTTGGGCTGGAAAGATTAGGGCAATTGCTCAATCAAAAACGGTATGGATGGAAGCATAATGCTGGATCGGATAGTTTGCTTACGGCTTCTTCCCATTTGGAAATGATGGAACGATTTGGCATGGATCCAGGAATTTGTGATGGCTTTTTGTATGGCTTTTCGAATAAGCTTGAATCCATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGGTTTATCATCATCCCAAGATGATTCGATTTGGTCAAATTCCATGGTCAATCCCACTTTATTGTTATACTCCTTCTTATTACATTGCTTATTAA

Coding sequence (CDS)

ATGGGTCGAAGAAATCGAGCACCTCCGAGAAGAGAAAAGCCTTTGATCCGACAAGTTTGGGCTTCGAATTTCGATTCCGAAATCTCCAAATTCGACAAATGTCTTCAATTTCATTCCATTCTGTCTATCGACACAGAATTTCCTGGGTTTATTACAAAATCCCCTTGGGGTTCGACTGAAGAAGAGATATATGAAGATTTCCGATCCAATGTAAACCAAACCAAATTGATTCAACTGGGTATTACGGCTTCTGATAATTCGGGACAAATCGGCGGTACATGGGAGTTCAATTTCTCCGATTTCGACCCACAATCCGACGCTCATGGCCCTTCCTCTGTTTCGTTTCTGGAAGACAACGGCATGGATTTCCAAAAACTGAAGAAAGACGGAATACCCATCACATTATTCACCGTAAATTTTTTGAGCATCATACGAAAACATAATGTTTTCAGATGGGTTACCTTCCATGGGTTGTACGATATCGGGTATTTGATCAAAGCCATGGGTTTAATCGCCATCTTGCCGGAATCAATGGAGGAATTCGCGACGGTGGTGGTGGAGGGAGTGGGAATCGTGAGGGATTTGAAACATATGTCTCGATTTTGTGAGGGATTGGAAGATGGGAAACTTGGGCTGGAAAGATTAGGGCAATTGCTCAATCAAAAACGGTATGGATGGAAGCATAATGCTGGATCGGATAGTTTGCTTACGGCTTCTTCCCATTTGGAAATGATGGAACGATTTGGCATGGATCCAGGAATTTGTGATGGCTTTTTGTATGGCTTTTCGAATAAGCTTGAATCCATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGGTTTATCATCATCCCAAGATGATTCGATTTGGTCAAATTCCATGGTCAATCCCACTTTATTGTTATACTCCTTCTTATTACATTGCTTATTAA

Protein sequence

MGRRNRAPPRREKPLIRQVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRSNVNQTKLIQLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKDGIPITLFTVNFLSIIRKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGVGIVRDLKHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTASSHLEMMERFGMDPGICDGFLYGFSNKLESMKMKMKMKMKMKVYHHPKMIRFGQIPWSIPLYCYTPSYYIAY

Homology

[Close]

BLAST of ClCG02G011840 vs. NCBI nr
Match: XP_038895744.1 (putative CCR4-associated factor 1 homolog 8 [Benincasa hispida])

HSP 1 Score: 459.5 bits (1181), Expect = 2.2e-125
Identity = 221/301 (73.42%), Postives = 253/301 (84.05%), Query Frame = 0


Query: 10  RREKPLIRQVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRS 69
           R  K LI +VWASNFD+EISK ++CL+FH+I+SIDTEFPGFI  SPWGS +E +YEDFR 
Sbjct: 5   RIRKSLIHKVWASNFDAEISKLEECLEFHTIVSIDTEFPGFIRNSPWGSIDETLYEDFRF 64

Query: 70  NVNQTKLIQLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKD 129
           NVNQTKLIQLG+TA D+SG+IGG+WEFNFSDFDP+ DA  PSS SFLE NG+DF KLKK 
Sbjct: 65  NVNQTKLIQLGLTACDDSGKIGGSWEFNFSDFDPEIDAQSPSSASFLEQNGLDFNKLKKY 124

Query: 130 GIPITLFTVNFLSIIRKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGV 189
           GIPI LFT  F+ IIRKHNVFRWVTFHGLYDIGYLIKAMG+  +LPE+MEEFATVVV  +
Sbjct: 125 GIPINLFTAKFVHIIRKHNVFRWVTFHGLYDIGYLIKAMGITEVLPETMEEFATVVVRRL 184

Query: 190 GIVRDLKHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTASSHLEMMERFG 249
           GIVRDLKHM+RFCEGLEDGKLGLERLG+LL+QKRYG KHNAGSDSLLTAS+H EM++RF 
Sbjct: 185 GIVRDLKHMARFCEGLEDGKLGLERLGKLLDQKRYGLKHNAGSDSLLTASAHFEMIQRFD 244

Query: 250 MDPGICDGFLYGFSNKLESMKMKMKMKMKMKVYHHPKMIRFGQIPWSIPLYCYTPSYYIA 309
           MD  ICDG+LYGFSNKL+SM + M M        H K+I FGQIP++IPLYCY PSY   
Sbjct: 245 MDAEICDGYLYGFSNKLQSMDINMNM-------FHRKIITFGQIPYAIPLYCYVPSYITY 298

Query: 310 Y 311
           Y
Sbjct: 305 Y 298

[Close]

BLAST of ClCG02G011840 vs. NCBI nr
Match: XP_031736916.1 (putative CCR4-associated factor 1 homolog 8 [Cucumis sativus] >KGN61926.1 hypothetical protein Csa_006644 [Cucumis sativus])

HSP 1 Score: 433.3 bits (1113), Expect = 1.7e-117
Identity = 215/311 (69.13%), Postives = 257/311 (82.64%), Query Frame = 0


Query: 1   MGRRNRAPPRREKPLIRQVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTE 60
           MG RN+    REKPLIRQVWASNFDSEI++FD+CL+FH+IL+IDTEFPGFI +SP GS +
Sbjct: 1   MGGRNQTRSTREKPLIRQVWASNFDSEIARFDECLRFHTILTIDTEFPGFIAQSPRGSID 60

Query: 61  EEIYEDFRSNVNQTKLIQLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNG 120
           +E+Y+DF  NVNQTKLIQLGITASD+ GQIGG+WEFNFSDFD ++DAH P ++ FLE NG
Sbjct: 61  DELYKDFCFNVNQTKLIQLGITASDDLGQIGGSWEFNFSDFDFEADAHSPYAIPFLEHNG 120

Query: 121 MDFQKLKKDGIPITLFTVNFLSIIRKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEE 180
           +D +K+KKDGIPI  FT  FL I+RK ++FRWVTFHGLYDIGYLIKAMGLI +LP+SMEE
Sbjct: 121 LDLKKMKKDGIPIASFTKKFLPILRKRDIFRWVTFHGLYDIGYLIKAMGLITVLPKSMEE 180

Query: 181 FATVVVEGVGIVRDLKHMSRFCEGLED-GKLGLERLGQLLNQKRYGWKHNAGSDSLLTAS 240
           FATVVV  VGIVRDLKHM++FCEGL+D G+LGLERLG+LLN KR+G KHNAGSDSLLTAS
Sbjct: 181 FATVVVNEVGIVRDLKHMAKFCEGLDDHGRLGLERLGKLLNLKRFGMKHNAGSDSLLTAS 240

Query: 241 SHLEMMERFGMDPGICDGFLYGFSNKLESMKMKMKMKMKMKVYHHPKMIRFGQIPWSIPL 300
           +HLEM+ERFGM+  +C+GFLYGFS  LES    MKMKMKMK+ HH  ++RF         
Sbjct: 241 AHLEMVERFGMNSKVCNGFLYGFSETLES----MKMKMKMKICHH-NILRFS-------- 297

Query: 301 YCYTPSYYIAY 311
             Y P Y++ Y
Sbjct: 301 -LYIPCYFVFY 297

[Close]

BLAST of ClCG02G011840 vs. NCBI nr
Match: KAA0045730.1 (putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa] >TYJ99550.1 putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 421.0 bits (1081), Expect = 8.8e-114
Identity = 212/311 (68.17%), Postives = 256/311 (82.32%), Query Frame = 0


Query: 1   MGRRNRAPPRR-EKPLIRQVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGST 60
           MG RN+   RR +KP IRQVWASNF+SEI++FD+CL+FH+IL+IDTEFPGFI +SP  S 
Sbjct: 1   MGGRNQTRSRRSKKPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSI 60

Query: 61  EEEIYEDFRSNVNQTKLIQLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDN 120
           +EEIY++FR NVNQ KLIQLGITAS++ GQIGG+WEFNFSDFD Q D+H PS++ FLE N
Sbjct: 61  DEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSAIPFLEKN 120

Query: 121 GMDFQKLKKDGIPITLFTVNFLSIIRKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESME 180
           G+DF+KLKK GIPI  FT  FL II+K ++FRWVTFHGLYDIGYLIKAMGLI +LP+SME
Sbjct: 121 GLDFKKLKKYGIPIASFTKKFLPIIQKRDIFRWVTFHGLYDIGYLIKAMGLITVLPKSME 180

Query: 181 EFATVVVEGVGIVRDLKHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTAS 240
           EFAT+VV  VGIVRDLKHM+RFCEGLEDG+LGLERLG++LN+KR+G KHNAGSDSLLTAS
Sbjct: 181 EFATLVVNEVGIVRDLKHMARFCEGLEDGRLGLERLGKILNKKRFGMKHNAGSDSLLTAS 240

Query: 241 SHLEMMERFGMDPGICDGFLYGFSNKLESMKMKMKMKMKMKVYHHPKMIRFGQIPWSIPL 300
           +H EM++RFGM   +C+GFLYGFS  LES        MKM +YHH  ++R GQIP     
Sbjct: 241 AHFEMVKRFGMTYEVCNGFLYGFSESLES--------MKMIIYHH-NILRLGQIPH---- 298

Query: 301 YCYTPSYYIAY 311
           + YTPS  I++
Sbjct: 301 FPYTPSCIISH 298

[Close]

BLAST of ClCG02G011840 vs. NCBI nr
Match: KAG6604931.1 (putative CCR4-associated factor 1-like 8, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027010.1 putative CCR4-associated factor 1-like 8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 378.3 bits (970), Expect = 6.6e-101
Identity = 186/297 (62.63%), Postives = 224/297 (75.42%), Query Frame = 0


Query: 1   MGRRNRAPPRREKPLIRQVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTE 60
           MGRRNRA PRR  P I++VWASNFD EI + ++CLQ + ILSIDTEFPG I  +PWGS +
Sbjct: 1   MGRRNRARPRRRTPSIQEVWASNFDHEILRLERCLQANHILSIDTEFPGCIRSTPWGSID 60

Query: 61  EEIYEDFRSNVNQTKLIQLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNG 120
           E +YED R NVNQTKLIQLG+TASD SGQ+ G+WEFNFSDFD Q D   PSS+SFLE NG
Sbjct: 61  ERVYEDLRFNVNQTKLIQLGLTASDESGQVVGSWEFNFSDFDHQIDTQNPSSISFLEQNG 120

Query: 121 MDFQKLKKDGIPITLFTVNFLSIIRKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEE 180
           +DF KLKK GIP++LFT+NF  IIR+  V +WVTFHGLYDIGYL+KAMG+   LPESMEE
Sbjct: 121 LDFAKLKKQGIPLSLFTLNFSRIIRRSRVRKWVTFHGLYDIGYLVKAMGVAEELPESMEE 180

Query: 181 FATVVVEGVGIVRDLKHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTASS 240
           FA +V  GVG+VRDLK ++R+CEGLE G++GLERLG+LL +KR+G KH+AGSDSLLTA  
Sbjct: 181 FAEMVARGVGVVRDLKEVARWCEGLEQGRVGLERLGELLGEKRFGMKHHAGSDSLLTAFV 240

Query: 241 HLEMMERFGMDPGICDGFLYGFSNKLESMKMKMKMKMKMKVYHHPKMIRFGQIPWSI 298
           H +M   F ++ G  DG LYG  NKLE MK+              + I FGQI  S+
Sbjct: 241 HAKMARWFRLESGAYDGHLYGLQNKLEHMKVN-------------QTIMFGQISCSL 284

[Close]

BLAST of ClCG02G011840 vs. NCBI nr
Match: XP_022947867.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata])

HSP 1 Score: 368.2 bits (944), Expect = 6.8e-98
Identity = 175/269 (65.06%), Postives = 212/269 (78.81%), Query Frame = 0


Query: 1   MGRRNRAPPRREKPLIRQVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTE 60
           MGRRNR  PRR  P I++VWASNFD EI + ++CLQ + ILSIDTEFPG I  +PWGS +
Sbjct: 1   MGRRNRERPRRRTPSIQEVWASNFDHEILRLERCLQANHILSIDTEFPGCIRSTPWGSID 60

Query: 61  EEIYEDFRSNVNQTKLIQLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNG 120
           E +YED R NVNQTKLIQLG+TASD SGQ+ G+WEFNFSDFD Q D   PSS++FLE NG
Sbjct: 61  ERVYEDLRFNVNQTKLIQLGLTASDESGQVAGSWEFNFSDFDHQIDTQNPSSIAFLEQNG 120

Query: 121 MDFQKLKKDGIPITLFTVNFLSIIRKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEE 180
           +DF KLKK GIP++LFT+NF  IIR+  V +WVTFHGLYDIGYL+KAMG+   LPESMEE
Sbjct: 121 LDFAKLKKQGIPLSLFTLNFSRIIRRSRVRKWVTFHGLYDIGYLVKAMGVAEELPESMEE 180

Query: 181 FATVVVEGVGIVRDLKHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTASS 240
           FA +V  GVG+VRDLK ++R+CEGLE G++GLERLG+LL +KR+G KH+AGSDSLLTA  
Sbjct: 181 FAEMVARGVGVVRDLKEVARWCEGLEQGRVGLERLGELLGEKRFGMKHHAGSDSLLTAFV 240

Query: 241 HLEMMERFGMDPGICDGFLYGFSNKLESM 270
           H +M   F ++    DG LYG  NKL+ M
Sbjct: 241 HAKMARWFRLESEAYDGHLYGLRNKLQYM 269

[Close]

BLAST of ClCG02G011840 vs. ExPASy Swiss-Prot
Match: Q9SHJ0 (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.2e-44
Identity = 99/251 (39.44%), Postives = 145/251 (57.77%), Query Frame = 0


Query: 13  KPLIRQVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRSNVN 72
           +PL R+VW SN D E+++  +CL+   +++ DTE+PG I ++ + S+ +E Y   + NV 
Sbjct: 6   QPLARRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVE 65

Query: 73  QTKLIQLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKDGIP 132
            TKLIQ G T  +  G+IGG WE NFS+F   SD     S+ FL  +G+D QK++ +G+ 
Sbjct: 66  NTKLIQCGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVD 125

Query: 133 I--TLFTVNFLSIIRKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGVG 192
           +    F    +++ R      +VTF G YD  Y +  +     LPE+  EFAT VV+  G
Sbjct: 126 MFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILN-HGKLPETHGEFATEVVKVFG 185

Query: 193 IVRDLKHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTASSHLEMMERFGM 252
            V D K M+ FCEGL +  LGL +L QLL   R G  H+AGSDSL+TA   +++   +  
Sbjct: 186 QVYDTKVMAGFCEGLGE-HLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHVY-E 245

Query: 253 DPGICDGFLYG 262
           D     G +YG
Sbjct: 246 DSRFARGLIYG 253

[Close]

BLAST of ClCG02G011840 vs. ExPASy Swiss-Prot
Match: Q9LXM4 (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana OX=3702 GN=CAF1-8 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.8e-38
Identity = 92/222 (41.44%), Postives = 131/222 (59.01%), Query Frame = 0


Query: 28  ISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRSNVNQTKLIQLGITASDNS 87
           +S  + CL+ +  ++IDTEFP  + ++   +T+EE Y D   +V++ KLIQLG+T  D +
Sbjct: 1   MSLIEDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDIN 60

Query: 88  GQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKDGIPIT-LFTVNFLSIIRK 147
           G+IGGTWE NFSDF    DA    S+ FL  NG+D +K++++GI I   F+  F  + + 
Sbjct: 61  GRIGGTWEINFSDFG-VDDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKT 120

Query: 148 HNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGVGIVRDLKHMSRFCEGLE 207
                WVTFHG YDI YL+K     A LP + E F+  V   +G V DLK M+  CEGL 
Sbjct: 121 RRNITWVTFHGSYDIAYLLKGFTGEA-LPVTSERFSKAVARVLGSVYDLKVMAGRCEGL- 180

Query: 208 DGKLGLERLGQLLNQKRYGWKHNAGSDSLLTASSHLEMMERF 249
             +LGLE L       R G  H+AGS++ LTA    +++  F
Sbjct: 181 SSRLGLETLAHEFGLNRVGTAHHAGSNNELTAMVFAKVLSPF 219

[Close]

BLAST of ClCG02G011840 vs. ExPASy Swiss-Prot
Match: O64773 (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana OX=3702 GN=CAF1-5 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.8e-38
Identity = 89/223 (39.91%), Postives = 132/223 (59.19%), Query Frame = 0


Query: 18  QVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRSNVNQTKLI 77
           +VW  N  +E++    CL+  + ++IDTEFPG + ++P  +++E  Y D + NV+ T LI
Sbjct: 4   EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRDMKFNVDNTHLI 63

Query: 78  QLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKDGIPITLFT 137
           QLG+T       I  TWE N SDF+         S++FL++NG+D  K++++GI I  F 
Sbjct: 64  QLGLTLFGKG--ITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIGIEEFF 123

Query: 138 VNFLSII-RKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGVG-IVRDL 197
           + F  I+  KH   RWVTF G YD  YL+K +     LPE+ +EF   V + +G  V D+
Sbjct: 124 MEFSQILNEKHGKMRWVTFQGSYDKAYLLKGL-TRKPLPETSKEFDETVQQLLGRFVYDV 183

Query: 198 KHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTA 239
           K M+  C GL   + GL+R+  +L  +R G  H+AGSDS LTA
Sbjct: 184 KKMAGLCSGL-SSRFGLQRIADVLQMRRVGKAHHAGSDSELTA 222

[Close]

BLAST of ClCG02G011840 vs. ExPASy Swiss-Prot
Match: Q9SFX6 (Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana OX=3702 GN=CAF1-3 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.4e-37
Identity = 90/223 (40.36%), Postives = 128/223 (57.40%), Query Frame = 0


Query: 18  QVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRSNVNQTKLI 77
           +VW  N + E++    CL+  S ++IDTEFPG + ++P  ++EE  Y D + NV+ T LI
Sbjct: 8   EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 67

Query: 78  QLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKDGIPITLFT 137
           QLG T  D  G    TWE N SDFD         S++FL+ NG++  K++++GI I  F 
Sbjct: 68  QLGFTLFDRRG-FAKTWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFF 127

Query: 138 VNFLSII-RKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGVG-IVRDL 197
            +F  I+  K     WV F G YD  YL+K +     LPE+ EEF   V + +G  V D+
Sbjct: 128 RDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFDV 187

Query: 198 KHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTA 239
           K ++  C GL   + GL+R+  +L  KR G  H+AGSDS LTA
Sbjct: 188 KKIAESCSGL-SSQFGLQRIADVLQMKRVGKAHHAGSDSELTA 228

[Close]

BLAST of ClCG02G011840 vs. ExPASy Swiss-Prot
Match: Q9C6M9 (Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana OX=3702 GN=CAF1-4 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.3e-37
Identity = 90/223 (40.36%), Postives = 128/223 (57.40%), Query Frame = 0


Query: 18  QVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRSNVNQTKLI 77
           +VW  N + E+     CL+  S ++IDTEFPG + ++P  ++EE  Y D + NV+ T LI
Sbjct: 3   EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 62

Query: 78  QLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKDGIPITLFT 137
           QLG T  D  G I  TWE N SDF+         S++FL+ NG++  K+ ++GI I  F 
Sbjct: 63  QLGFTLFDRRG-ITKTWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFF 122

Query: 138 VNFLSIIR-KHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGVG-IVRDL 197
            +F  I++ K     WV F G YD  YL+K +     LPE+ EEF   V + +G  V D+
Sbjct: 123 RDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFDV 182

Query: 198 KHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTA 239
           K ++  C GL   + GL+R+  +L  KR G  H+AGSDS LTA
Sbjct: 183 KKIAESCSGL-SSRFGLQRIADVLQMKRVGKAHHAGSDSELTA 223

[Close]

BLAST of ClCG02G011840 vs. ExPASy TrEMBL
Match: A0A0A0LPP0 (Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_2G270190 PE=3 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 8.3e-118
Identity = 215/311 (69.13%), Postives = 257/311 (82.64%), Query Frame = 0


Query: 1   MGRRNRAPPRREKPLIRQVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTE 60
           MG RN+    REKPLIRQVWASNFDSEI++FD+CL+FH+IL+IDTEFPGFI +SP GS +
Sbjct: 1   MGGRNQTRSTREKPLIRQVWASNFDSEIARFDECLRFHTILTIDTEFPGFIAQSPRGSID 60

Query: 61  EEIYEDFRSNVNQTKLIQLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNG 120
           +E+Y+DF  NVNQTKLIQLGITASD+ GQIGG+WEFNFSDFD ++DAH P ++ FLE NG
Sbjct: 61  DELYKDFCFNVNQTKLIQLGITASDDLGQIGGSWEFNFSDFDFEADAHSPYAIPFLEHNG 120

Query: 121 MDFQKLKKDGIPITLFTVNFLSIIRKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEE 180
           +D +K+KKDGIPI  FT  FL I+RK ++FRWVTFHGLYDIGYLIKAMGLI +LP+SMEE
Sbjct: 121 LDLKKMKKDGIPIASFTKKFLPILRKRDIFRWVTFHGLYDIGYLIKAMGLITVLPKSMEE 180

Query: 181 FATVVVEGVGIVRDLKHMSRFCEGLED-GKLGLERLGQLLNQKRYGWKHNAGSDSLLTAS 240
           FATVVV  VGIVRDLKHM++FCEGL+D G+LGLERLG+LLN KR+G KHNAGSDSLLTAS
Sbjct: 181 FATVVVNEVGIVRDLKHMAKFCEGLDDHGRLGLERLGKLLNLKRFGMKHNAGSDSLLTAS 240

Query: 241 SHLEMMERFGMDPGICDGFLYGFSNKLESMKMKMKMKMKMKVYHHPKMIRFGQIPWSIPL 300
           +HLEM+ERFGM+  +C+GFLYGFS  LES    MKMKMKMK+ HH  ++RF         
Sbjct: 241 AHLEMVERFGMNSKVCNGFLYGFSETLES----MKMKMKMKICHH-NILRFS-------- 297

Query: 301 YCYTPSYYIAY 311
             Y P Y++ Y
Sbjct: 301 -LYIPCYFVFY 297

[Close]

BLAST of ClCG02G011840 vs. ExPASy TrEMBL
Match: A0A5A7TRG1 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001200 PE=3 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 4.3e-114
Identity = 212/311 (68.17%), Postives = 256/311 (82.32%), Query Frame = 0


Query: 1   MGRRNRAPPRR-EKPLIRQVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGST 60
           MG RN+   RR +KP IRQVWASNF+SEI++FD+CL+FH+IL+IDTEFPGFI +SP  S 
Sbjct: 1   MGGRNQTRSRRSKKPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSI 60

Query: 61  EEEIYEDFRSNVNQTKLIQLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDN 120
           +EEIY++FR NVNQ KLIQLGITAS++ GQIGG+WEFNFSDFD Q D+H PS++ FLE N
Sbjct: 61  DEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSAIPFLEKN 120

Query: 121 GMDFQKLKKDGIPITLFTVNFLSIIRKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESME 180
           G+DF+KLKK GIPI  FT  FL II+K ++FRWVTFHGLYDIGYLIKAMGLI +LP+SME
Sbjct: 121 GLDFKKLKKYGIPIASFTKKFLPIIQKRDIFRWVTFHGLYDIGYLIKAMGLITVLPKSME 180

Query: 181 EFATVVVEGVGIVRDLKHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTAS 240
           EFAT+VV  VGIVRDLKHM+RFCEGLEDG+LGLERLG++LN+KR+G KHNAGSDSLLTAS
Sbjct: 181 EFATLVVNEVGIVRDLKHMARFCEGLEDGRLGLERLGKILNKKRFGMKHNAGSDSLLTAS 240

Query: 241 SHLEMMERFGMDPGICDGFLYGFSNKLESMKMKMKMKMKMKVYHHPKMIRFGQIPWSIPL 300
           +H EM++RFGM   +C+GFLYGFS  LES        MKM +YHH  ++R GQIP     
Sbjct: 241 AHFEMVKRFGMTYEVCNGFLYGFSESLES--------MKMIIYHH-NILRLGQIPH---- 298

Query: 301 YCYTPSYYIAY 311
           + YTPS  I++
Sbjct: 301 FPYTPSCIISH 298

[Close]

BLAST of ClCG02G011840 vs. ExPASy TrEMBL
Match: A0A6J1G7L2 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111451625 PE=3 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 3.3e-98
Identity = 175/269 (65.06%), Postives = 212/269 (78.81%), Query Frame = 0


Query: 1   MGRRNRAPPRREKPLIRQVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTE 60
           MGRRNR  PRR  P I++VWASNFD EI + ++CLQ + ILSIDTEFPG I  +PWGS +
Sbjct: 1   MGRRNRERPRRRTPSIQEVWASNFDHEILRLERCLQANHILSIDTEFPGCIRSTPWGSID 60

Query: 61  EEIYEDFRSNVNQTKLIQLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNG 120
           E +YED R NVNQTKLIQLG+TASD SGQ+ G+WEFNFSDFD Q D   PSS++FLE NG
Sbjct: 61  ERVYEDLRFNVNQTKLIQLGLTASDESGQVAGSWEFNFSDFDHQIDTQNPSSIAFLEQNG 120

Query: 121 MDFQKLKKDGIPITLFTVNFLSIIRKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEE 180
           +DF KLKK GIP++LFT+NF  IIR+  V +WVTFHGLYDIGYL+KAMG+   LPESMEE
Sbjct: 121 LDFAKLKKQGIPLSLFTLNFSRIIRRSRVRKWVTFHGLYDIGYLVKAMGVAEELPESMEE 180

Query: 181 FATVVVEGVGIVRDLKHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTASS 240
           FA +V  GVG+VRDLK ++R+CEGLE G++GLERLG+LL +KR+G KH+AGSDSLLTA  
Sbjct: 181 FAEMVARGVGVVRDLKEVARWCEGLEQGRVGLERLGELLGEKRFGMKHHAGSDSLLTAFV 240

Query: 241 HLEMMERFGMDPGICDGFLYGFSNKLESM 270
           H +M   F ++    DG LYG  NKL+ M
Sbjct: 241 HAKMARWFRLESEAYDGHLYGLRNKLQYM 269

[Close]

BLAST of ClCG02G011840 vs. ExPASy TrEMBL
Match: A0A6J1CXP9 (Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111015407 PE=3 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 1.1e-96
Identity = 181/310 (58.39%), Postives = 226/310 (72.90%), Query Frame = 0


Query: 1   MGRRNRAPPRREKPLIRQVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTE 60
           MGR  R   RR    IR+VW+ NFD E++  + CL  + IL+IDTEFPGFI  +PWG+ E
Sbjct: 1   MGRGKRGHSRRGNAQIREVWSRNFDLELANLNDCLNLYPILTIDTEFPGFIRSTPWGAIE 60

Query: 61  EEIYEDFRSNVNQTKLIQLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNG 120
           E++Y+DFR NVN+TKLIQLG+TASD  G IG TWEFNFSDFDPQ D H  SSVSFL+ NG
Sbjct: 61  EKLYDDFRFNVNRTKLIQLGLTASDEIGNIGSTWEFNFSDFDPQIDTHNASSVSFLKQNG 120

Query: 121 MDFQKLKKDGIPITLFTVNFLSIIRKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEE 180
           +DF KLK+ GIPI  FT     + RKH + RWVTFHGLYDIGYL+KAMG+   +PESMEE
Sbjct: 121 LDFDKLKEFGIPINEFTSKAFFLFRKHRIVRWVTFHGLYDIGYLLKAMGVAGEIPESMEE 180

Query: 181 FATVVVEGVGIVRDLKHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTASS 240
           FA +V   +G V DLKHM++FCEGLEDGKLGLE+L QL+NQKR+G KH+AGSDSLLTAS 
Sbjct: 181 FAELVERALGNVSDLKHMAQFCEGLEDGKLGLEKLAQLMNQKRFGNKHHAGSDSLLTASL 240

Query: 241 HLEMMERFGMDPGICDGFLYGFSNKLESMKMKMKMKMKMKVYHHPKMIRFGQIPWSIPLY 300
           + +M  +F +   +CDGFLYG         +++K+  K+K+Y +   + FGQIP+ +   
Sbjct: 241 YAKMKNQFELGSEVCDGFLYG---------LRIKLHAKIKLYQN---LMFGQIPYGLRA- 296

Query: 301 CYTPSYYIAY 311
           CY P  YIAY
Sbjct: 301 CYPPC-YIAY 296

[Close]

BLAST of ClCG02G011840 vs. ExPASy TrEMBL
Match: A0A6J1G7T4 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111451626 PE=3 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 1.2e-95
Identity = 165/261 (63.22%), Postives = 205/261 (78.54%), Query Frame = 0


Query: 9   PRREKPLIRQVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFR 68
           PR + PLIR+VWA N D EI + D+CL  +SI+SIDTEFPG I ++PWG+ +EE+Y DFR
Sbjct: 8   PRGDNPLIREVWAYNLDHEIIRLDRCLLSYSIMSIDTEFPGCIKRTPWGTFDEELYADFR 67

Query: 69  SNVNQTKLIQLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKK 128
            NVNQTK+IQLG+T SD SG IGGTWEFNFSDFDP+ DAH P+S+ FL+ NG+DF KLKK
Sbjct: 68  FNVNQTKVIQLGVTVSDESGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGLDFGKLKK 127

Query: 129 DGIPITLFTVNFLSIIRKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEG 188
           DGI +  F + FL  + KH ++RWVTFHGLYDIGYL+ AMG++  LPE++ EF  +V   
Sbjct: 128 DGIKVRKFAIRFLYTLGKHAIYRWVTFHGLYDIGYLMLAMGVVKSLPETLGEFKWIVARR 187

Query: 189 VGIVRDLKHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTASSHLEMMERF 248
           VG VRDLKHM+RFCEGLE G LGLE+LGQLL+QKR+G KH+AGSDSL+TA  H +M++R+
Sbjct: 188 VGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLHEKMLQRY 247

Query: 249 GMDPGICDGFLYGFSNKLESM 270
                ICDGFLYG S K E +
Sbjct: 248 DFHAEICDGFLYGLSKKFEEL 268

[Close]

BLAST of ClCG02G011840 vs. TAIR 10
Match: AT1G06450.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 181.8 bits (460), Expect = 8.4e-46
Identity = 99/251 (39.44%), Postives = 145/251 (57.77%), Query Frame = 0


Query: 13  KPLIRQVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRSNVN 72
           +PL R+VW SN D E+++  +CL+   +++ DTE+PG I ++ + S+ +E Y   + NV 
Sbjct: 6   QPLARRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVE 65

Query: 73  QTKLIQLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKDGIP 132
            TKLIQ G T  +  G+IGG WE NFS+F   SD     S+ FL  +G+D QK++ +G+ 
Sbjct: 66  NTKLIQCGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVD 125

Query: 133 I--TLFTVNFLSIIRKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGVG 192
           +    F    +++ R      +VTF G YD  Y +  +     LPE+  EFAT VV+  G
Sbjct: 126 MFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILN-HGKLPETHGEFATEVVKVFG 185

Query: 193 IVRDLKHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTASSHLEMMERFGM 252
            V D K M+ FCEGL +  LGL +L QLL   R G  H+AGSDSL+TA   +++   +  
Sbjct: 186 QVYDTKVMAGFCEGLGE-HLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHVY-E 245

Query: 253 DPGICDGFLYG 262
           D     G +YG
Sbjct: 246 DSRFARGLIYG 253

[Close]

BLAST of ClCG02G011840 vs. TAIR 10
Match: AT3G44240.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 160.6 bits (405), Expect = 2.0e-39
Identity = 92/222 (41.44%), Postives = 131/222 (59.01%), Query Frame = 0


Query: 28  ISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRSNVNQTKLIQLGITASDNS 87
           +S  + CL+ +  ++IDTEFP  + ++   +T+EE Y D   +V++ KLIQLG+T  D +
Sbjct: 1   MSLIEDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDIN 60

Query: 88  GQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKDGIPIT-LFTVNFLSIIRK 147
           G+IGGTWE NFSDF    DA    S+ FL  NG+D +K++++GI I   F+  F  + + 
Sbjct: 61  GRIGGTWEINFSDFG-VDDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKT 120

Query: 148 HNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGVGIVRDLKHMSRFCEGLE 207
                WVTFHG YDI YL+K     A LP + E F+  V   +G V DLK M+  CEGL 
Sbjct: 121 RRNITWVTFHGSYDIAYLLKGFTGEA-LPVTSERFSKAVARVLGSVYDLKVMAGRCEGL- 180

Query: 208 DGKLGLERLGQLLNQKRYGWKHNAGSDSLLTASSHLEMMERF 249
             +LGLE L       R G  H+AGS++ LTA    +++  F
Sbjct: 181 SSRLGLETLAHEFGLNRVGTAHHAGSNNELTAMVFAKVLSPF 219

[Close]

BLAST of ClCG02G011840 vs. TAIR 10
Match: AT1G61470.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 159.8 bits (403), Expect = 3.4e-39
Identity = 89/223 (39.91%), Postives = 132/223 (59.19%), Query Frame = 0


Query: 18  QVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRSNVNQTKLI 77
           +VW  N  +E++    CL+  + ++IDTEFPG + ++P  +++E  Y D + NV+ T LI
Sbjct: 4   EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRDMKFNVDNTHLI 63

Query: 78  QLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKDGIPITLFT 137
           QLG+T       I  TWE N SDF+         S++FL++NG+D  K++++GI I  F 
Sbjct: 64  QLGLTLFGKG--ITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIGIEEFF 123

Query: 138 VNFLSII-RKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGVG-IVRDL 197
           + F  I+  KH   RWVTF G YD  YL+K +     LPE+ +EF   V + +G  V D+
Sbjct: 124 MEFSQILNEKHGKMRWVTFQGSYDKAYLLKGL-TRKPLPETSKEFDETVQQLLGRFVYDV 183

Query: 198 KHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTA 239
           K M+  C GL   + GL+R+  +L  +R G  H+AGSDS LTA
Sbjct: 184 KKMAGLCSGL-SSRFGLQRIADVLQMRRVGKAHHAGSDSELTA 222

[Close]

BLAST of ClCG02G011840 vs. TAIR 10
Match: AT1G27820.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 157.5 bits (397), Expect = 1.7e-38
Identity = 90/223 (40.36%), Postives = 128/223 (57.40%), Query Frame = 0


Query: 18  QVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRSNVNQTKLI 77
           +VW  N + E++    CL+  S ++IDTEFPG + ++P  ++EE  Y D + NV+ T LI
Sbjct: 8   EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 67

Query: 78  QLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKDGIPITLFT 137
           QLG T  D  G    TWE N SDFD         S++FL+ NG++  K++++GI I  F 
Sbjct: 68  QLGFTLFDRRG-FAKTWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFF 127

Query: 138 VNFLSII-RKHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGVG-IVRDL 197
            +F  I+  K     WV F G YD  YL+K +     LPE+ EEF   V + +G  V D+
Sbjct: 128 RDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFDV 187

Query: 198 KHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTA 239
           K ++  C GL   + GL+R+  +L  KR G  H+AGSDS LTA
Sbjct: 188 KKIAESCSGL-SSQFGLQRIADVLQMKRVGKAHHAGSDSELTA 228

[Close]

BLAST of ClCG02G011840 vs. TAIR 10
Match: AT1G27890.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 156.4 bits (394), Expect = 3.8e-38
Identity = 90/223 (40.36%), Postives = 128/223 (57.40%), Query Frame = 0


Query: 18  QVWASNFDSEISKFDKCLQFHSILSIDTEFPGFITKSPWGSTEEEIYEDFRSNVNQTKLI 77
           +VW  N + E+     CL+  S ++IDTEFPG + ++P  ++EE  Y D + NV+ T LI
Sbjct: 3   EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 62

Query: 78  QLGITASDNSGQIGGTWEFNFSDFDPQSDAHGPSSVSFLEDNGMDFQKLKKDGIPITLFT 137
           QLG T  D  G I  TWE N SDF+         S++FL+ NG++  K+ ++GI I  F 
Sbjct: 63  QLGFTLFDRRG-ITKTWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFF 122

Query: 138 VNFLSIIR-KHNVFRWVTFHGLYDIGYLIKAMGLIAILPESMEEFATVVVEGVG-IVRDL 197
            +F  I++ K     WV F G YD  YL+K +     LPE+ EEF   V + +G  V D+
Sbjct: 123 RDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFDV 182

Query: 198 KHMSRFCEGLEDGKLGLERLGQLLNQKRYGWKHNAGSDSLLTA 239
           K ++  C GL   + GL+R+  +L  KR G  H+AGSDS LTA
Sbjct: 183 KKIAESCSGL-SSRFGLQRIADVLQMKRVGKAHHAGSDSELTA 223

The following BLAST results are available for this feature:

BLAST of ClCG02G011840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895744.1	2.2e-125	73.42	putative CCR4-associated factor 1 homolog 8 [Benincasa hispida]	[more]
XP_031736916.1	1.7e-117	69.13	putative CCR4-associated factor 1 homolog 8 [Cucumis sativus] >KGN61926.1 hypoth...	[more]
KAA0045730.1	8.8e-114	68.17	putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa] >TYJ...	[more]
KAG6604931.1	6.6e-101	62.63	putative CCR4-associated factor 1-like 8, partial [Cucurbita argyrosperma subsp....	[more]
XP_022947867.1	6.8e-98	65.06	putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata]	[more]

BLAST of ClCG02G011840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHJ0	1.2e-44	39.44	Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9LXM4	2.8e-38	41.44	Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
O64773	4.8e-38	39.91	Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SFX6	2.4e-37	40.36	Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9C6M9	5.3e-37	40.36	Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]

BLAST of ClCG02G011840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPP0	8.3e-118	69.13	Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_2G270190 PE=3 SV...	[more]
A0A5A7TRG1	4.3e-114	68.17	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A6J1G7L2	3.3e-98	65.06	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111451625 PE=3...	[more]
A0A6J1CXP9	1.1e-96	58.39	Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111015407 PE=...	[more]
A0A6J1G7T4	1.2e-95	63.22	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111451626 PE=3...	[more]

BLAST of ClCG02G011840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06450.1	8.4e-46	39.44	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G44240.1	2.0e-39	41.44	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G61470.1	3.4e-39	39.91	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G27820.1	1.7e-38	40.36	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G27890.1	3.8e-38	40.36	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 5..266 e-value: 1.4E-65 score: 223.0
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 19..132 e-value: 2.3E-11 score: 43.6
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 14..285
None	No IPR available	PANTHER	PTHR10797:SF57	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 3-RELATED	coord: 14..285
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 10..249

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G011840.1	ClCG02G011840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006402	mRNA catabolic process
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0030014	CCR4-NOT complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity