ClCG02G011595 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G011595
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CG_Chr02: 24489889 .. 24490902 (-)
RNA-Seq Expression	ClCG02G011595
Synteny	ClCG02G011595

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGAGAAGTCAGTTACCATTTCCACAGAGGAGTTTGCTAAATTTCAGGCGTACCAACACTCATTGGAAGCATCATCTTCATCTAATCCTACTGCCACCATTGCTGACACAGGTAATACGAAATGTCTACTTACGTCATCTACCAAATGGGTCATAGACTCTGGTGTCATAGCTCATATGACAGGTAATTCTAACTTATTCTCCACACCATTGTCCCCTACCTCTTCCCCATCTGTCACTTTGGCATATGGCTCAACATCCTCTGTCCTTGGTTCTGGCACCATTAACCTTTCTCCATCCTTTTCTCTGTCTTTTGTGTTACATTTGCCTCAACTATCCTTTAATTTAATTTCTGTTAGCCAACTTACTCATGACCTTAACTGTGTTGTCTCGTCTTTTCCTGGTTATTGCTTGTTTTAGGATCGTATGATGAAGAAGATTATTGGTAGAGGATATGAGTCAGGGGGCCTTTATCTTTTTGATCACTAGATACCGAAAGTTGTGGTTTGCTCAGGAGTTACATCTCCGTTTAAAGTTCATTGTCGTTTGGGTCATCCATCTCTGTTCATGTTGAAGAAACTATATCCAGAATTTCGATCTTTGTCCTCTTTGAATTGTGATTTGTGTCAGTTCGCTAAATTTCATCTTCTTAGTTCTAGTCCTAGAGTCAATAAACGAGCAAGTGCTCCATTTGAATTAGTTCATTTTGATATTTGGGGTCCGTGCCCAGTCGTGTCCCAAACAGGTTTTCATTACTTTGTTACTTTTGTTGACAATTATTCTCGTTTGACTTGGTTATACTTTATGAAAAATCATTCTGAATTATTATCTCACTTTTGTGCTTTTCAAGCTGAAATTCAAAATCAGTTCAATGTTTCTATCAAAACTTTGCGCACTGATAATGCTGGCGAATATTTTTCTAATGTGCTTGGATCGTACTTAAGTGAACATGGCATCATTCATCAATCATCTTGTGCAGACACTCCATCCCAAAATGGGGTTGCTAAATGA

mRNA sequence

ATGACAGAGAAGTCAGTTACCATTTCCACAGAGGAGTTTGCTAAATTTCAGGCGTACCAACACTCATTGGAAGCATCATCTTCATCTAATCCTACTGCCACCATTGCTGACACAGGTAATACGAAATGTCTACTTACGTCATCTACCAAATGGGTCATAGACTCTGGTGTCATAGCTCATATGACAGGTAATTCTAACTTATTCTCCACACCATTGTCCCCTACCTCTTCCCCATCTGTCACTTTGGCATATGGCTCAACATCCTCTGTCCTTGGTTCTGGCACCATTAACCTTTCTCCATCCTTTTCTCTGTCTTTTGTGTTACATTTGCCTCAACTATCCTTTAATTTAATTTCTGTTAGCCAACTTACTCATGACCTTAACTGTGTTGTCTCGTCTTTTCCTGGAGTTACATCTCCGTTTAAAGTTCATTGTCGTTTGGGTCATCCATCTCTGTTCATGTTGAAGAAACTATATCCAGAATTTCGATCTTTGTCCTCTTTGAATTGTGATTTGTGTCAGTTCGCTAAATTTCATCTTCTTAGTTCTAGTCCTAGAGTCAATAAACGAGCAAGTGCTCCATTTGAATTAGTTCATTTTGATATTTGGGGTCCGTGCCCAGTCGTGTCCCAAACAGGTTTTCATTACTTTGTTACTTTTGTTGACAATTATTCTCGTTTGACTTGGTTATACTTTATGAAAAATCATTCTGAATTATTATCTCACTTTTGTGCTTTTCAAGCTGAAATTCAAAATCAGTTCAATGTTTCTATCAAAACTTTGCGCACTGATAATGCTGGCGAATATTTTTCTAATGTGCTTGGATCGTACTTAAGTGAACATGGCATCATTCATCAATCATCTTGTGCAGACACTCCATCCCAAAATGGGGTTGCTAAATGA

Coding sequence (CDS)

ATGACAGAGAAGTCAGTTACCATTTCCACAGAGGAGTTTGCTAAATTTCAGGCGTACCAACACTCATTGGAAGCATCATCTTCATCTAATCCTACTGCCACCATTGCTGACACAGGTAATACGAAATGTCTACTTACGTCATCTACCAAATGGGTCATAGACTCTGGTGTCATAGCTCATATGACAGGTAATTCTAACTTATTCTCCACACCATTGTCCCCTACCTCTTCCCCATCTGTCACTTTGGCATATGGCTCAACATCCTCTGTCCTTGGTTCTGGCACCATTAACCTTTCTCCATCCTTTTCTCTGTCTTTTGTGTTACATTTGCCTCAACTATCCTTTAATTTAATTTCTGTTAGCCAACTTACTCATGACCTTAACTGTGTTGTCTCGTCTTTTCCTGGAGTTACATCTCCGTTTAAAGTTCATTGTCGTTTGGGTCATCCATCTCTGTTCATGTTGAAGAAACTATATCCAGAATTTCGATCTTTGTCCTCTTTGAATTGTGATTTGTGTCAGTTCGCTAAATTTCATCTTCTTAGTTCTAGTCCTAGAGTCAATAAACGAGCAAGTGCTCCATTTGAATTAGTTCATTTTGATATTTGGGGTCCGTGCCCAGTCGTGTCCCAAACAGGTTTTCATTACTTTGTTACTTTTGTTGACAATTATTCTCGTTTGACTTGGTTATACTTTATGAAAAATCATTCTGAATTATTATCTCACTTTTGTGCTTTTCAAGCTGAAATTCAAAATCAGTTCAATGTTTCTATCAAAACTTTGCGCACTGATAATGCTGGCGAATATTTTTCTAATGTGCTTGGATCGTACTTAAGTGAACATGGCATCATTCATCAATCATCTTGTGCAGACACTCCATCCCAAAATGGGGTTGCTAAATGA

Protein sequence

MTEKSVTISTEEFAKFQAYQHSLEASSSSNPTATIADTGNTKCLLTSSTKWVIDSGVIAHMTGNSNLFSTPLSPTSSPSVTLAYGSTSSVLGSGTINLSPSFSLSFVLHLPQLSFNLISVSQLTHDLNCVVSSFPGVTSPFKVHCRLGHPSLFMLKKLYPEFRSLSSLNCDLCQFAKFHLLSSSPRVNKRASAPFELVHFDIWGPCPVVSQTGFHYFVTFVDNYSRLTWLYFMKNHSELLSHFCAFQAEIQNQFNVSIKTLRTDNAGEYFSNVLGSYLSEHGIIHQSSCADTPSQNGVAK

Homology

[Close]

BLAST of ClCG02G011595 vs. NCBI nr
Match: XP_031744753.1 (uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus])

HSP 1 Score: 466.1 bits (1198), Expect = 2.3e-127
Identity = 247/335 (73.73%), Postives = 262/335 (78.21%), Query Frame = 0


Query: 3   EKSVTISTEEFAKFQAYQHSLEASSSSNPTATIADTGNTKCLLTSSTKWVIDSGVIAHMT 62
           E SVTIS +EFAKFQ YQ SL+ASSSS P A+    GN KCLLTSSTKWVIDSG  AHMT
Sbjct: 282 EASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLTSSTKWVIDSGATAHMT 341

Query: 63  GNSNLFSTPLSPTSSPSVTLAYGSTSSVLGSGTINLSPSFSLSFVLHLPQLSFNLISVSQ 122
           GNS+LFS PLSP   PSVTLA GSTSSVLGSGTI+L+PSFSLS VLHLP LSFNLIS SQ
Sbjct: 342 GNSHLFSRPLSPAPFPSVTLADGSTSSVLGSGTIHLTPSFSLSSVLHLPNLSFNLISTSQ 401

Query: 123 LTHDLNCVVSSFPG-------------------------------------VTSPFKVHC 182
           LTHDLNCVV  F G                                     V SPF+VHC
Sbjct: 402 LTHDLNCVVMFFSGYCLFQDRVTKKIIGRGYESGGLYLFDHQVSQAVACPVVPSPFEVHC 461

Query: 183 RLGHPSLFMLKKLYPEFRSLSSLNCDLCQFAKFHLLSSSPRVNKRASAPFELVHFDIWGP 242
           RLGHPSLF+LKKLYPEFRSLSSLNCD CQFAKFH LSSSPRV+KRA APFELVH DIWGP
Sbjct: 462 RLGHPSLFVLKKLYPEFRSLSSLNCDSCQFAKFHRLSSSPRVDKRAIAPFELVHSDIWGP 521

Query: 243 CPVVSQTGFHYFVTFVDNYSRLTWLYFMKNHSELLSHFCAFQAEIQNQFNVSIKTLRTDN 301
           CPVVSQTGF YFVTFVD++SRLTWLY MKN SELLSHFCAF  EI+NQFNVSIKTLRTDN
Sbjct: 522 CPVVSQTGFRYFVTFVDDHSRLTWLYLMKNRSELLSHFCAFHTEIKNQFNVSIKTLRTDN 581

[Close]

BLAST of ClCG02G011595 vs. NCBI nr
Match: RVX08145.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 333.6 bits (854), Expect = 1.8e-87
Identity = 176/336 (52.38%), Postives = 227/336 (67.56%), Query Frame = 0


Query: 2   TEKSVTISTEEFAKFQAYQHSLEASSSSNPTATIADTGNTKCLLTSSTKWVIDSGVIAHM 61
           ++K VT++ EEF+K+  YQ +L+AS+   P + +A++G T CL++SS KW+IDSG   HM
Sbjct: 195 SDKIVTMTAEEFSKYSQYQDALKAST---PVSALAESGKT-CLVSSSNKWIIDSGATNHM 254

Query: 62  TGNSNLFSTPLSPTSSPSVTLAYGSTSSVLGSGTINLSPSFSLSFVLHLPQLSFNLISVS 121
           TGN   FST     S+P VT+A GST  + GSGT+  + S +LS VL+LP L+FNLISVS
Sbjct: 255 TGNHKTFST-FRTHSAPPVTIADGSTYEIKGSGTVKPTSSITLSSVLNLPNLAFNLISVS 314

Query: 122 QLTHDLNCVVSSFP-------------------------------------GVTSPFKVH 181
           +LT +LNC VS FP                                        SP + H
Sbjct: 315 KLTKNLNCSVSFFPDHCVFQDLMTKRTFGKGHVSDGLYILDEWVPRPVACVSTASPVEAH 374

Query: 182 CRLGHPSLFMLKKLYPEFRSLSSLNCDLCQFAKFHLLSSSPRVNKRASAPFELVHFDIWG 241
           CRLGHPSL +LKKL P+F +L SL+C+ C FAK H  S  PR+NKR  + FELVH D+WG
Sbjct: 375 CRLGHPSLPVLKKLCPQFDTLPSLDCESCHFAKHHRSSLGPRLNKRVESLFELVHSDVWG 434

Query: 242 PCPVVSQTGFHYFVTFVDNYSRLTWLYFMKNHSELLSHFCAFQAEIQNQFNVSIKTLRTD 301
           PCPV SQTGF YFVTFVD++SR+TW+YFMKN SE+ SHFCAF AEI+ Q++VS+K LR+D
Sbjct: 435 PCPVTSQTGFRYFVTFVDDFSRMTWIYFMKNRSEVFSHFCAFSAEIKTQYDVSVKILRSD 494

[Close]

BLAST of ClCG02G011595 vs. NCBI nr
Match: ABY49842.1 (hypothetical protein [Vitis hybrid cultivar])

HSP 1 Score: 332.4 bits (851), Expect = 4.0e-87
Identity = 176/336 (52.38%), Postives = 226/336 (67.26%), Query Frame = 0


Query: 2   TEKSVTISTEEFAKFQAYQHSLEASSSSNPTATIADTGNTKCLLTSSTKWVIDSGVIAHM 61
           + K VT++ EEF+K+  YQ +L+AS+   P + +A++G T CL++SS KW+IDSG   HM
Sbjct: 287 SNKIVTMTAEEFSKYSQYQDALKAST---PVSALAESGKT-CLVSSSNKWIIDSGATDHM 346

Query: 62  TGNSNLFSTPLSPTSSPSVTLAYGSTSSVLGSGTINLSPSFSLSFVLHLPQLSFNLISVS 121
           TGN   FST     S+P VT+A GST  + GSGT+  + S +LS VL+LP L+FNLISVS
Sbjct: 347 TGNHKTFST-FRTHSAPPVTVADGSTYEIKGSGTVKPTSSITLSSVLNLPNLAFNLISVS 406

Query: 122 QLTHDLNCVVSSFP-------------------------------------GVTSPFKVH 181
           +LT +LNC VS FP                                        SP + H
Sbjct: 407 KLTKNLNCSVSFFPDHCVFQDLMTKRTFGKGHVSDGLYILDEWVPRPVACVSTASPVEAH 466

Query: 182 CRLGHPSLFMLKKLYPEFRSLSSLNCDLCQFAKFHLLSSSPRVNKRASAPFELVHFDIWG 241
           CRLGHPSL +LKKL P+F +L SL+C+ C FAK H  S  PR+NKRA + FELVH D+WG
Sbjct: 467 CRLGHPSLPVLKKLCPQFDTLPSLDCESCHFAKHHRSSLGPRLNKRAESLFELVHSDVWG 526

Query: 242 PCPVVSQTGFHYFVTFVDNYSRLTWLYFMKNHSELLSHFCAFQAEIQNQFNVSIKTLRTD 301
           PCPV SQTGF YFVTFVD++SR+TW+YFMKN SE+ SHFCAF AEI+ Q++VS+K LR+D
Sbjct: 527 PCPVTSQTGFRYFVTFVDDFSRMTWIYFMKNRSEVFSHFCAFSAEIKTQYDVSVKILRSD 586

[Close]

BLAST of ClCG02G011595 vs. NCBI nr
Match: RVW69134.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 332.4 bits (851), Expect = 4.0e-87
Identity = 176/336 (52.38%), Postives = 226/336 (67.26%), Query Frame = 0


Query: 2   TEKSVTISTEEFAKFQAYQHSLEASSSSNPTATIADTGNTKCLLTSSTKWVIDSGVIAHM 61
           + K VT++ EEF+K+  YQ +L+AS+   P + +A++G T CL++SS KW+IDSG   HM
Sbjct: 226 SNKIVTMTAEEFSKYSQYQDALKAST---PVSALAESGKT-CLVSSSNKWIIDSGATDHM 285

Query: 62  TGNSNLFSTPLSPTSSPSVTLAYGSTSSVLGSGTINLSPSFSLSFVLHLPQLSFNLISVS 121
           TGN   FST     S+P VT+A GST  + GSGT+  + S +LS VL+LP L+FNLISVS
Sbjct: 286 TGNHKTFST-FRTHSAPPVTVADGSTYEIKGSGTVKPTSSITLSSVLNLPNLAFNLISVS 345

Query: 122 QLTHDLNCVVSSFP-------------------------------------GVTSPFKVH 181
           +LT +LNC VS FP                                        SP + H
Sbjct: 346 KLTKNLNCSVSFFPDHCVFQDLMTKRTFGKGHVSDGLYILDEWVPRPVACVSTASPVEAH 405

Query: 182 CRLGHPSLFMLKKLYPEFRSLSSLNCDLCQFAKFHLLSSSPRVNKRASAPFELVHFDIWG 241
           CRLGHPSL +LKKL P+F +L SL+C+ C FAK H  S  PR+NKRA + FELVH D+WG
Sbjct: 406 CRLGHPSLPVLKKLCPQFDTLPSLDCESCHFAKHHRSSLGPRLNKRAESLFELVHSDVWG 465

Query: 242 PCPVVSQTGFHYFVTFVDNYSRLTWLYFMKNHSELLSHFCAFQAEIQNQFNVSIKTLRTD 301
           PCPV SQTGF YFVTFVD++SR+TW+YFMKN SE+ SHFCAF AEI+ Q++VS+K LR+D
Sbjct: 466 PCPVTSQTGFRYFVTFVDDFSRMTWIYFMKNRSEVFSHFCAFSAEIKTQYDVSVKILRSD 525

[Close]

BLAST of ClCG02G011595 vs. NCBI nr
Match: RVW38649.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 331.6 bits (849), Expect = 6.8e-87
Identity = 176/336 (52.38%), Postives = 225/336 (66.96%), Query Frame = 0


Query: 2   TEKSVTISTEEFAKFQAYQHSLEASSSSNPTATIADTGNTKCLLTSSTKWVIDSGVIAHM 61
           + K VT++ EEF+K+  YQ +L+AS+   P + +A++G T CL++SS KW+IDSG   HM
Sbjct: 286 SNKIVTMTAEEFSKYSQYQDALKAST---PVSALAESGKT-CLVSSSNKWIIDSGATDHM 345

Query: 62  TGNSNLFSTPLSPTSSPSVTLAYGSTSSVLGSGTINLSPSFSLSFVLHLPQLSFNLISVS 121
           TGN   FST     S+P VT+A GST  + GSGT+  + S +LS VL+LP L+FNLISVS
Sbjct: 346 TGNHKTFST-FRTHSAPPVTVADGSTYEIKGSGTVKPTSSITLSSVLNLPNLAFNLISVS 405

Query: 122 QLTHDLNCVVSSFP-------------------------------------GVTSPFKVH 181
           +LT +LNC VS FP                                        SP + H
Sbjct: 406 KLTKNLNCSVSFFPNHCVFQDLMTKRTFGKGHVSDGLYILDEWVPRPVACVSTASPVEAH 465

Query: 182 CRLGHPSLFMLKKLYPEFRSLSSLNCDLCQFAKFHLLSSSPRVNKRASAPFELVHFDIWG 241
           CRLGHPSL  LKKL P+F +L SL+C+ C FAK H  S  PR+NKRA + FELVH D+WG
Sbjct: 466 CRLGHPSLPALKKLCPQFDTLPSLDCESCHFAKHHRSSLGPRLNKRAESLFELVHSDVWG 525

Query: 242 PCPVVSQTGFHYFVTFVDNYSRLTWLYFMKNHSELLSHFCAFQAEIQNQFNVSIKTLRTD 301
           PCPV SQTGF YFVTFVD++SR+TW+YFMKN SE+ SHFCAF AEI+ Q++VS+K LR+D
Sbjct: 526 PCPVTSQTGFRYFVTFVDDFSRMTWIYFMKNRSEVFSHFCAFSAEIKTQYDVSVKILRSD 585

[Close]

BLAST of ClCG02G011595 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.3e-27
Identity = 96/304 (31.58%), Postives = 143/304 (47.04%), Query Frame = 0


Query: 47  SSTKWVIDSGVIAHMTGNSNLFSTPLSPTSSPSVTLAYGSTSSVLGSGTINL---SPSFS 106
           ++  W++DSG   H+T + N  S     T    V +A GST  +  +G+ +L   S S  
Sbjct: 306 NANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLD 365

Query: 107 LSFVLHLPQLSFNLISVSQLTH----------------DLNCVVSSFPGVT--------- 166
           L+ VL++P +  NLISV +L +                DLN  V    G T         
Sbjct: 366 LNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPI 425

Query: 167 ----------SPFKV------HCRLGHPSLFMLKKLYPEFR------SLSSLNCDLCQFA 226
                     SP         H RLGHPSL +L  +           S   L+C  C   
Sbjct: 426 ASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFIN 485

Query: 227 KFHLLSSSPRVNKRASAPFELVHFDIWGPCPVVSQTGFHYFVTFVDNYSRLTWLYFMKNH 286
           K H +  S      +S P E ++ D+W   P++S   + Y+V FVD+++R TWLY +K  
Sbjct: 486 KSHKVPFS-NSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQK 545

Query: 287 SELLSHFCAFQAEIQNQFNVSIKTLRTDNAGEYFSNVLGSYLSEHGIIHQSSCADTPSQN 301
           S++   F  F++ ++N+F   I TL +DN GE+   VL  YLS+HGI H +S   TP  N
Sbjct: 546 SQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFV--VLRDYLSQHGISHFTSPPHTPEHN 605

[Close]

BLAST of ClCG02G011595 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 7.7e-25
Identity = 92/305 (30.16%), Postives = 142/305 (46.56%), Query Frame = 0


Query: 47  SSTKWVIDSGVIAHMTGNSNLFSTPLSPTSSPSVTLAYGSTSSVLGSGTINLSPS---FS 106
           SS  W++DSG   H+T + N  S     T    V +A GST  +  +G+ +LS      +
Sbjct: 327 SSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLN 386

Query: 107 LSFVLHLPQLSFNLISVSQLTH----------------DLNCVVSSFPGVT--------- 166
           L  +L++P +  NLISV +L +                DLN  V    G T         
Sbjct: 387 LHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPI 446

Query: 167 ----------SPFKV------HCRLGHPSLFMLKKLYPEFRSLSSLN-------CDLCQF 226
                     SP         H RLGHP+  +L  +   + SLS LN       C  C  
Sbjct: 447 ASSQPVSLFASPSSKATHSSWHARLGHPAPSILNSVISNY-SLSVLNPSHKFLSCSDCLI 506

Query: 227 AKFHLLSSSPRVNKRASAPFELVHFDIWGPCPVVSQTGFHYFVTFVDNYSRLTWLYFMKN 286
            K + +  S +    ++ P E ++ D+W   P++S   + Y+V FVD+++R TWLY +K 
Sbjct: 507 NKSNKVPFS-QSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQ 566

Query: 287 HSELLSHFCAFQAEIQNQFNVSIKTLRTDNAGEYFSNVLGSYLSEHGIIHQSSCADTPSQ 301
            S++   F  F+  ++N+F   I T  +DN GE+ +  L  Y S+HGI H +S   TP  
Sbjct: 567 KSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVA--LWEYFSQHGISHLTSPPHTPEH 626

[Close]

BLAST of ClCG02G011595 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-20
Identity = 82/297 (27.61%), Postives = 127/297 (42.76%), Query Frame = 0


Query: 49  TKWVIDSGVIAHMTGNSNLFSTPLSPTSSPSVTLAYGSTSSVLGSGTI----NLSPSFSL 108
           ++WV+D+    H T   +LF   ++     +V +   S S + G G I    N+  +  L
Sbjct: 292 SEWVVDTAASHHATPVRDLFCRYVAGDFG-TVKMGNTSYSKIAGIGDICIKTNVGCTLVL 351

Query: 109 SFVLHLPQLSFNLISVSQLTHD---------------LNCVVSSFPGVTSPFKV------ 168
             V H+P L  NLIS   L  D                + V++      + ++       
Sbjct: 352 KDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAEICQ 411

Query: 169 ---------------HCRLGHPS-----LFMLKKLYPEFRSLSSLNCDLCQFAKFHLLSS 228
                          H R+GH S     +   K L    +  +   CD C F K H +S 
Sbjct: 412 GELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSF 471

Query: 229 SPRVNKRASAPFELVHFDIWGPCPVVSQTGFHYFVTFVDNYSRLTWLYFMKNHSELLSHF 288
                ++ +   +LV+ D+ GP  + S  G  YFVTF+D+ SR  W+Y +K   ++   F
Sbjct: 472 QTSSERKLNI-LDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVF 531

Query: 289 CAFQAEIQNQFNVSIKTLRTDNAGEYFSNVLGSYLSEHGIIHQSSCADTPSQNGVAK 301
             F A ++ +    +K LR+DN GEY S     Y S HGI H+ +   TP  NGVA+
Sbjct: 532 QKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAE 586

[Close]

BLAST of ClCG02G011595 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.6e-09
Identity = 42/151 (27.81%), Postives = 73/151 (48.34%), Query Frame = 0


Query: 155 LKKLYPEFRSLSSLNCDLCQFAKF--HLLSSSPRVNKRAS-APFELVHFDIWGPCPVVSQ 214
           LK+   E+ + S+  C  C   K   H      R+  + S  PF+ +H DI+GP   + +
Sbjct: 618 LKESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPK 677

Query: 215 TGFHYFVTFVDNYSRLTWLYFMKNHSE--LLSHFCAFQAEIQNQFNVSIKTLRTDNAGEY 274
           +   YF++F D  +R  W+Y + +  E  +L+ F +  A I+NQFN  +  ++ D   EY
Sbjct: 678 SAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEY 737

Query: 275 FSNVLGSYLSEHGIIHQSSCADTPSQNGVAK 301
            +  L  + +  GI    +       +GVA+
Sbjct: 738 TNKTLHKFFTNRGITACYTTTADSRAHGVAE 768

[Close]

BLAST of ClCG02G011595 vs. ExPASy Swiss-Prot
Match: P25384 (Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-C PE=3 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 1.6e-09
Identity = 42/151 (27.81%), Postives = 73/151 (48.34%), Query Frame = 0


Query: 155 LKKLYPEFRSLSSLNCDLCQFAKF--HLLSSSPRVNKRAS-APFELVHFDIWGPCPVVSQ 214
           LK+   E+ + S+  C  C   K   H      R+  + S  PF+ +H DI+GP   + +
Sbjct: 618 LKESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPK 677

Query: 215 TGFHYFVTFVDNYSRLTWLYFMKNHSE--LLSHFCAFQAEIQNQFNVSIKTLRTDNAGEY 274
           +   YF++F D  +R  W+Y + +  E  +L+ F +  A I+NQFN  +  ++ D   EY
Sbjct: 678 SAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEY 737

Query: 275 FSNVLGSYLSEHGIIHQSSCADTPSQNGVAK 301
            +  L  + +  GI    +       +GVA+
Sbjct: 738 TNKTLHKFFTNRGITACYTTTADSRAHGVAE 768

[Close]

BLAST of ClCG02G011595 vs. ExPASy TrEMBL
Match: A0A438JGR5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4093 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 8.7e-88
Identity = 176/336 (52.38%), Postives = 227/336 (67.56%), Query Frame = 0


Query: 2   TEKSVTISTEEFAKFQAYQHSLEASSSSNPTATIADTGNTKCLLTSSTKWVIDSGVIAHM 61
           ++K VT++ EEF+K+  YQ +L+AS+   P + +A++G T CL++SS KW+IDSG   HM
Sbjct: 195 SDKIVTMTAEEFSKYSQYQDALKAST---PVSALAESGKT-CLVSSSNKWIIDSGATNHM 254

Query: 62  TGNSNLFSTPLSPTSSPSVTLAYGSTSSVLGSGTINLSPSFSLSFVLHLPQLSFNLISVS 121
           TGN   FST     S+P VT+A GST  + GSGT+  + S +LS VL+LP L+FNLISVS
Sbjct: 255 TGNHKTFST-FRTHSAPPVTIADGSTYEIKGSGTVKPTSSITLSSVLNLPNLAFNLISVS 314

Query: 122 QLTHDLNCVVSSFP-------------------------------------GVTSPFKVH 181
           +LT +LNC VS FP                                        SP + H
Sbjct: 315 KLTKNLNCSVSFFPDHCVFQDLMTKRTFGKGHVSDGLYILDEWVPRPVACVSTASPVEAH 374

Query: 182 CRLGHPSLFMLKKLYPEFRSLSSLNCDLCQFAKFHLLSSSPRVNKRASAPFELVHFDIWG 241
           CRLGHPSL +LKKL P+F +L SL+C+ C FAK H  S  PR+NKR  + FELVH D+WG
Sbjct: 375 CRLGHPSLPVLKKLCPQFDTLPSLDCESCHFAKHHRSSLGPRLNKRVESLFELVHSDVWG 434

Query: 242 PCPVVSQTGFHYFVTFVDNYSRLTWLYFMKNHSELLSHFCAFQAEIQNQFNVSIKTLRTD 301
           PCPV SQTGF YFVTFVD++SR+TW+YFMKN SE+ SHFCAF AEI+ Q++VS+K LR+D
Sbjct: 435 PCPVTSQTGFRYFVTFVDDFSRMTWIYFMKNRSEVFSHFCAFSAEIKTQYDVSVKILRSD 494

[Close]

BLAST of ClCG02G011595 vs. ExPASy TrEMBL
Match: A0A438GAA6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2601 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.9e-87
Identity = 176/336 (52.38%), Postives = 226/336 (67.26%), Query Frame = 0


Query: 2   TEKSVTISTEEFAKFQAYQHSLEASSSSNPTATIADTGNTKCLLTSSTKWVIDSGVIAHM 61
           + K VT++ EEF+K+  YQ +L+AS+   P + +A++G T CL++SS KW+IDSG   HM
Sbjct: 226 SNKIVTMTAEEFSKYSQYQDALKAST---PVSALAESGKT-CLVSSSNKWIIDSGATDHM 285

Query: 62  TGNSNLFSTPLSPTSSPSVTLAYGSTSSVLGSGTINLSPSFSLSFVLHLPQLSFNLISVS 121
           TGN   FST     S+P VT+A GST  + GSGT+  + S +LS VL+LP L+FNLISVS
Sbjct: 286 TGNHKTFST-FRTHSAPPVTVADGSTYEIKGSGTVKPTSSITLSSVLNLPNLAFNLISVS 345

Query: 122 QLTHDLNCVVSSFP-------------------------------------GVTSPFKVH 181
           +LT +LNC VS FP                                        SP + H
Sbjct: 346 KLTKNLNCSVSFFPDHCVFQDLMTKRTFGKGHVSDGLYILDEWVPRPVACVSTASPVEAH 405

Query: 182 CRLGHPSLFMLKKLYPEFRSLSSLNCDLCQFAKFHLLSSSPRVNKRASAPFELVHFDIWG 241
           CRLGHPSL +LKKL P+F +L SL+C+ C FAK H  S  PR+NKRA + FELVH D+WG
Sbjct: 406 CRLGHPSLPVLKKLCPQFDTLPSLDCESCHFAKHHRSSLGPRLNKRAESLFELVHSDVWG 465

Query: 242 PCPVVSQTGFHYFVTFVDNYSRLTWLYFMKNHSELLSHFCAFQAEIQNQFNVSIKTLRTD 301
           PCPV SQTGF YFVTFVD++SR+TW+YFMKN SE+ SHFCAF AEI+ Q++VS+K LR+D
Sbjct: 466 PCPVTSQTGFRYFVTFVDDFSRMTWIYFMKNRSEVFSHFCAFSAEIKTQYDVSVKILRSD 525

[Close]

BLAST of ClCG02G011595 vs. ExPASy TrEMBL
Match: B0FBS2 (Uncharacterized protein OS=Vitis hybrid cultivar OX=241073 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.9e-87
Identity = 176/336 (52.38%), Postives = 226/336 (67.26%), Query Frame = 0


Query: 2   TEKSVTISTEEFAKFQAYQHSLEASSSSNPTATIADTGNTKCLLTSSTKWVIDSGVIAHM 61
           + K VT++ EEF+K+  YQ +L+AS+   P + +A++G T CL++SS KW+IDSG   HM
Sbjct: 287 SNKIVTMTAEEFSKYSQYQDALKAST---PVSALAESGKT-CLVSSSNKWIIDSGATDHM 346

Query: 62  TGNSNLFSTPLSPTSSPSVTLAYGSTSSVLGSGTINLSPSFSLSFVLHLPQLSFNLISVS 121
           TGN   FST     S+P VT+A GST  + GSGT+  + S +LS VL+LP L+FNLISVS
Sbjct: 347 TGNHKTFST-FRTHSAPPVTVADGSTYEIKGSGTVKPTSSITLSSVLNLPNLAFNLISVS 406

Query: 122 QLTHDLNCVVSSFP-------------------------------------GVTSPFKVH 181
           +LT +LNC VS FP                                        SP + H
Sbjct: 407 KLTKNLNCSVSFFPDHCVFQDLMTKRTFGKGHVSDGLYILDEWVPRPVACVSTASPVEAH 466

Query: 182 CRLGHPSLFMLKKLYPEFRSLSSLNCDLCQFAKFHLLSSSPRVNKRASAPFELVHFDIWG 241
           CRLGHPSL +LKKL P+F +L SL+C+ C FAK H  S  PR+NKRA + FELVH D+WG
Sbjct: 467 CRLGHPSLPVLKKLCPQFDTLPSLDCESCHFAKHHRSSLGPRLNKRAESLFELVHSDVWG 526

Query: 242 PCPVVSQTGFHYFVTFVDNYSRLTWLYFMKNHSELLSHFCAFQAEIQNQFNVSIKTLRTD 301
           PCPV SQTGF YFVTFVD++SR+TW+YFMKN SE+ SHFCAF AEI+ Q++VS+K LR+D
Sbjct: 527 PCPVTSQTGFRYFVTFVDDFSRMTWIYFMKNRSEVFSHFCAFSAEIKTQYDVSVKILRSD 586

[Close]

BLAST of ClCG02G011595 vs. ExPASy TrEMBL
Match: A0A438DT29 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3495 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 3.3e-87
Identity = 176/336 (52.38%), Postives = 225/336 (66.96%), Query Frame = 0


Query: 2   TEKSVTISTEEFAKFQAYQHSLEASSSSNPTATIADTGNTKCLLTSSTKWVIDSGVIAHM 61
           + K VT++ EEF+K+  YQ +L+AS+   P + +A++G T CL++SS KW+IDSG   HM
Sbjct: 286 SNKIVTMTAEEFSKYSQYQDALKAST---PVSALAESGKT-CLVSSSNKWIIDSGATDHM 345

Query: 62  TGNSNLFSTPLSPTSSPSVTLAYGSTSSVLGSGTINLSPSFSLSFVLHLPQLSFNLISVS 121
           TGN   FST     S+P VT+A GST  + GSGT+  + S +LS VL+LP L+FNLISVS
Sbjct: 346 TGNHKTFST-FRTHSAPPVTVADGSTYEIKGSGTVKPTSSITLSSVLNLPNLAFNLISVS 405

Query: 122 QLTHDLNCVVSSFP-------------------------------------GVTSPFKVH 181
           +LT +LNC VS FP                                        SP + H
Sbjct: 406 KLTKNLNCSVSFFPNHCVFQDLMTKRTFGKGHVSDGLYILDEWVPRPVACVSTASPVEAH 465

Query: 182 CRLGHPSLFMLKKLYPEFRSLSSLNCDLCQFAKFHLLSSSPRVNKRASAPFELVHFDIWG 241
           CRLGHPSL  LKKL P+F +L SL+C+ C FAK H  S  PR+NKRA + FELVH D+WG
Sbjct: 466 CRLGHPSLPALKKLCPQFDTLPSLDCESCHFAKHHRSSLGPRLNKRAESLFELVHSDVWG 525

Query: 242 PCPVVSQTGFHYFVTFVDNYSRLTWLYFMKNHSELLSHFCAFQAEIQNQFNVSIKTLRTD 301
           PCPV SQTGF YFVTFVD++SR+TW+YFMKN SE+ SHFCAF AEI+ Q++VS+K LR+D
Sbjct: 526 PCPVTSQTGFRYFVTFVDDFSRMTWIYFMKNRSEVFSHFCAFSAEIKTQYDVSVKILRSD 585

[Close]

BLAST of ClCG02G011595 vs. ExPASy TrEMBL
Match: A0A438H537 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4131 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 5.6e-87
Identity = 176/336 (52.38%), Postives = 224/336 (66.67%), Query Frame = 0


Query: 2   TEKSVTISTEEFAKFQAYQHSLEASSSSNPTATIADTGNTKCLLTSSTKWVIDSGVIAHM 61
           + K VT++ EEF+K+  YQ +L+AS+   P   + ++G T CL++SS KW+IDSG   HM
Sbjct: 286 SNKIVTMTAEEFSKYSQYQDALKAST---PVNALVESGKT-CLVSSSNKWIIDSGATDHM 345

Query: 62  TGNSNLFSTPLSPTSSPSVTLAYGSTSSVLGSGTINLSPSFSLSFVLHLPQLSFNLISVS 121
           TGN   FST     S+P VT+A GST  + GSGT+  + S +LS VL+LP L+FNLISVS
Sbjct: 346 TGNHKTFST-FRTHSAPPVTVADGSTYEIKGSGTMKPTSSITLSSVLNLPNLAFNLISVS 405

Query: 122 QLTHDLNCVVSSFP-------------------------------------GVTSPFKVH 181
           +LT DLNC VS FP                                        SP + H
Sbjct: 406 KLTKDLNCSVSFFPDHCVFQDLMTKRTFGKGHVSDGLYILDEWVPRPVACVSTASPVEAH 465

Query: 182 CRLGHPSLFMLKKLYPEFRSLSSLNCDLCQFAKFHLLSSSPRVNKRASAPFELVHFDIWG 241
           CRLGHPSL +LKKL P+F +L SL+C+ C FAK H  S  PR+NKRA + FELVH D+WG
Sbjct: 466 CRLGHPSLPVLKKLCPQFDTLPSLDCESCHFAKHHRSSLGPRLNKRAESLFELVHSDVWG 525

Query: 242 PCPVVSQTGFHYFVTFVDNYSRLTWLYFMKNHSELLSHFCAFQAEIQNQFNVSIKTLRTD 301
           PCPV SQTGF YFVTFVD++SR+TW+YFMKN SE+ SHFCAF AEI+ Q++VS+K LR+D
Sbjct: 526 PCPVTSQTGFRYFVTFVDDFSRMTWIYFMKNRSEVFSHFCAFSAEIKTQYDVSVKILRSD 585

The following BLAST results are available for this feature:

BLAST of ClCG02G011595 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031744753.1	2.3e-127	73.73	uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus]	[more]
RVX08145.1	1.8e-87	52.38	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
ABY49842.1	4.0e-87	52.38	hypothetical protein [Vitis hybrid cultivar]	[more]
RVW69134.1	4.0e-87	52.38	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW38649.1	6.8e-87	52.38	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of ClCG02G011595 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	6.3e-27	31.58	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	7.7e-25	30.16	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P10978	1.2e-20	27.61	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q12491	1.6e-09	27.81	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P25384	1.6e-09	27.81	Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of ClCG02G011595 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438JGR5	8.7e-88	52.38	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438GAA6	1.9e-87	52.38	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
B0FBS2	1.9e-87	52.38	Uncharacterized protein OS=Vitis hybrid cultivar OX=241073 PE=4 SV=1	[more]
A0A438DT29	3.3e-87	52.38	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438H537	5.6e-87	52.38	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of ClCG02G011595 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 192..289 e-value: 3.7E-14 score: 52.9
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 190..300 score: 15.131937
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 186..300 e-value: 6.3E-24 score: 86.3
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 135..290
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 135..290
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 190..299

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G011595.1	ClCG02G011595.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0003676	nucleic acid binding