ClCG02G010230 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG02G010230
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr02: 18018547 .. 18019018 (+)
RNA-Seq ExpressionClCG02G010230
SyntenyClCG02G010230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATTAACTAACAAAAGTATTGGACAACAATAAATTATAAATGATTATAATTAATTAATAATGTGTTAGAAATTTTTTAGTTTCGTTTTACAATCATGCGGTGCTTTAACATACAGTTGATTCCAAGAAGTCGTTGTGTTTAGGATTTGGAGCAGACCATCTGATTGGTCCTTTGGGCTTGCAACTTTTGAAGGTTGAGGCGGATGTTGGTGCCCTTGCACTCATTCTATTAGGATCAAAAGTGTTAAACCCATCAGAGATTGGTGGAAGGGGAGGAAGGGAAATTGATGATTCAGGTACTTCAGAAATAGATTCTCTAAAAATAGGAACTATAGCTTCCAAAGTTTATGGAGCAGGCACTAAATTGAGCATGACTCTAGAAGTTGCCATGAGTATAGATGGACAAGACATGGCTAGAAAGAAGAAGAACGTGAAGAATAATGTATTGTATCGAAAAGCCATAGAATAG

mRNA sequence

ATGGTATTAACTAACAAAATTGATTCCAAGAAGTCGTTGTGTTTAGGATTTGGAGCAGACCATCTGATTGGTCCTTTGGGCTTGCAACTTTTGAAGGTTGAGGCGGATGTTGGTGCCCTTGCACTCATTCTATTAGGATCAAAAGTGTTAAACCCATCAGAGATTGGTGGAAGGGGAGGAAGGGAAATTGATGATTCAGGTACTTCAGAAATAGATTCTCTAAAAATAGGAACTATAGCTTCCAAAGTTTATGGAGCAGGCACTAAATTGAGCATGACTCTAGAAGTTGCCATGAGTATAGATGGACAAGACATGGCTAGAAAGAAGAAGAACGTGAAGAATAATGTATTGTATCGAAAAGCCATAGAATAG

Coding sequence (CDS)

ATGGTATTAACTAACAAAATTGATTCCAAGAAGTCGTTGTGTTTAGGATTTGGAGCAGACCATCTGATTGGTCCTTTGGGCTTGCAACTTTTGAAGGTTGAGGCGGATGTTGGTGCCCTTGCACTCATTCTATTAGGATCAAAAGTGTTAAACCCATCAGAGATTGGTGGAAGGGGAGGAAGGGAAATTGATGATTCAGGTACTTCAGAAATAGATTCTCTAAAAATAGGAACTATAGCTTCCAAAGTTTATGGAGCAGGCACTAAATTGAGCATGACTCTAGAAGTTGCCATGAGTATAGATGGACAAGACATGGCTAGAAAGAAGAAGAACGTGAAGAATAATGTATTGTATCGAAAAGCCATAGAATAG

Protein sequence

MVLTNKIDSKKSLCLGFGADHLIGPLGLQLLKVEADVGALALILLGSKVLNPSEIGGRGGREIDDSGTSEIDSLKIGTIASKVYGAGTKLSMTLEVAMSIDGQDMARKKKNVKNNVLYRKAIE
Homology
BLAST of ClCG02G010230 vs. NCBI nr
Match: KAE8649712.1 (hypothetical protein Csa_012861, partial [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 8.0e-18
Identity = 62/102 (60.78%), Postives = 74/102 (72.55%), Query Frame = 0

Query: 13  LCLGFGADHLIGPLGLQLLKVEADVGALALILLGSKVLNPSEIGGRGGREIDDSGTSEID 72
           LCLG GADH IGPLGLQ    +A  GALA I LGSK++N SE+GGR   + DDSGTS ID
Sbjct: 2   LCLGLGADHAIGPLGLQ-SNNDAGNGALAPIPLGSKLINSSEVGGR-EIDDDDSGTSAID 61

Query: 73  SLKIGTI-ASKVYGAGTKLSMTLEVAMSIDGQDMARKKKNVK 114
           SLK+  + +S+V G   K SM L VAM +DG+DMA +KKNVK
Sbjct: 62  SLKLRMVDSSRVVGGCAKSSMPLVVAMILDGEDMAMRKKNVK 101

BLAST of ClCG02G010230 vs. NCBI nr
Match: KAE8649705.1 (hypothetical protein Csa_011947, partial [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-05
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 0

Query: 48  KVLNPSEIGGRGGREIDDSGTSEIDSLKIGTI-ASKVYGAGTKLSMTLEVAMSIDGQDMA 107
           K++N SE+GGR   + DDSGTS IDSLK+  + +S+V G   K SM L VAM ++G+DMA
Sbjct: 16  KLINSSEVGGR-EIDDDDSGTSAIDSLKLRMVDSSRVVGGCAKSSMPLVVAMILNGEDMA 75

Query: 108 RKKKN 112
            +KKN
Sbjct: 76  MRKKN 79

BLAST of ClCG02G010230 vs. NCBI nr
Match: KAG6581979.1 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-04
Identity = 44/114 (38.60%), Postives = 59/114 (51.75%), Query Frame = 0

Query: 32  KVEADVGALALILLGSKVLNPSEIGGRGGREIDDSGT----------------------- 91
           +VE  +GALA  LLGS+V  PSE+   GG +IDD GT                       
Sbjct: 16  EVEEGIGALAPTLLGSEVAKPSEV---GGIQIDDLGTSTDVVGAFVVVNGALEGTKLDPF 75

Query: 92  -------SEIDSLKIGTIASKVYGAGTKLSMTLEVAMSIDGQD-MARKKKNVKN 115
                  S +D+L++G +AS V  A T+ SM LEVA S + +D + RKKKN +N
Sbjct: 76  NKKGWRSSAMDALEVGIVASNVVRACTESSMALEVATSEEEEDTVKRKKKNQEN 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649712.18.0e-1860.78hypothetical protein Csa_012861, partial [Cucumis sativus][more]
KAE8649705.12.7e-0553.85hypothetical protein Csa_011947, partial [Cucumis sativus][more]
KAG6581979.11.7e-0438.60OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1, partial [Cucurbita ar... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G010230.1ClCG02G010230.1mRNA