ClCG02G010045 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G010045
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Gag/pol protein
Location	CG_Chr02: 16836115 .. 16836396 (+)
RNA-Seq Expression	ClCG02G010045
Synteny	ClCG02G010045

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCTGTATGAGGCTAAGGATTCGATCCTTACGGGATACACAGACTGTGATTTTCAGACTGATAAAGATTCTAAAAATTCTACATTAGGATCAGTGTTTATTCTTAATGGAGGGACTATAGTTTGGCGTAGCACAAAACAAAGTTGCATTGTTGACTCTACCATGGAGGCAGAGTATGTAGCTGCTAATGAAGCTACTAAGAAGGCTGTTTGGCTTAGAAAATTTTTAACAGACCAGAAGTTGTTCCAACATGTCAATGGCCATCACTCTTTATTGTGA

mRNA sequence

ATGCTTCTGTATGAGGCTAAGGATTCGATCCTTACGGGATACACAGACTGTGATTTTCAGACTGATAAAGATTCTAAAAATTCTACATTAGGATCAGTGTTTATTCTTAATGGAGGGACTATAGTTTGGCGTAGCACAAAACAAAGTTGCATTGTTGACTCTACCATGGAGGCAGAGTATGTAGCTGCTAATGAAGCTACTAAGAAGGCTGTTTGGCTTAGAAAATTTTTAACAGACCAGAAGTTGTTCCAACATGTCAATGGCCATCACTCTTTATTGTGA

Coding sequence (CDS)

ATGCTTCTGTATGAGGCTAAGGATTCGATCCTTACGGGATACACAGACTGTGATTTTCAGACTGATAAAGATTCTAAAAATTCTACATTAGGATCAGTGTTTATTCTTAATGGAGGGACTATAGTTTGGCGTAGCACAAAACAAAGTTGCATTGTTGACTCTACCATGGAGGCAGAGTATGTAGCTGCTAATGAAGCTACTAAGAAGGCTGTTTGGCTTAGAAAATTTTTAACAGACCAGAAGTTGTTCCAACATGTCAATGGCCATCACTCTTTATTGTGA

Protein sequence

MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKLFQHVNGHHSLL

Homology

[Close]

BLAST of ClCG02G010045 vs. NCBI nr
Match: KAA0025159.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 3.2e-27
Identity = 64/87 (73.56%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 1   MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEY 60
           ML+Y AKD ILTGYTD DFQTDKDS+ STLGSVF LNGG +VWRS KQ CI DSTMEAEY
Sbjct: 834 MLVYGAKDLILTGYTDSDFQTDKDSRKSTLGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 893

Query: 61  VAANEATKKAVWLRKFLTDQKLFQHVN 88
           VAA EA K+AVWLRKFL D ++  ++N
Sbjct: 894 VAACEAVKEAVWLRKFLHDLEVVPNMN 920

[Close]

BLAST of ClCG02G010045 vs. NCBI nr
Match: KAA0049828.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK08693.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 4.2e-27
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 1  MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEY 60
          ML+Y AKD ILTGYTD DFQTDKDS+ STLGSVF LNGG ++WRS KQ CI DSTMEAEY
Sbjct: 1  MLVYGAKDLILTGYTDSDFQTDKDSRKSTLGSVFTLNGGAVIWRSIKQGCIADSTMEAEY 60

Query: 61 VAANEATKKAVWLRKFLTDQKLFQHVN 88
          VAA EA K+AVWLRKFL D ++  ++N
Sbjct: 61 VAACEAAKEAVWLRKFLHDLEVVPNMN 87

[Close]

BLAST of ClCG02G010045 vs. NCBI nr
Match: KAA0051544.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK21279.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 1.2e-26
Identity = 64/87 (73.56%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 1   MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEY 60
           M++Y AKD ILTGYTD DFQTDKDS+ ST GSV ILNGG IVWRS KQ CI DSTMEAEY
Sbjct: 401 MVVYGAKDLILTGYTDSDFQTDKDSRKSTWGSVIILNGGAIVWRSIKQGCIADSTMEAEY 460

Query: 61  VAANEATKKAVWLRKFLTDQKLFQHVN 88
           VAA EATK+AVWLRKFL D ++  ++N
Sbjct: 461 VAAFEATKEAVWLRKFLHDLEVVLNMN 487

[Close]

BLAST of ClCG02G010045 vs. NCBI nr
Match: KAA0042496.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 1.6e-26
Identity = 63/87 (72.41%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1   MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEY 60
           ML+Y AKD ILTGYTD DFQTDKDS+ ST GSVF LNGG +VWRS KQ CI DSTMEAEY
Sbjct: 131 MLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 190

Query: 61  VAANEATKKAVWLRKFLTDQKLFQHVN 88
           VAA EA K+AVWLRKFL D ++  ++N
Sbjct: 191 VAACEAAKEAVWLRKFLHDLEVVPNMN 217

[Close]

BLAST of ClCG02G010045 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 1.6e-26
Identity = 63/87 (72.41%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1    MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEY 60
            ML+Y AKD ILTGYTD DFQTDKDS+ ST GSVF LNGG +VWRS KQ CI DSTMEAEY
Sbjct: 1066 MLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 1125

Query: 61   VAANEATKKAVWLRKFLTDQKLFQHVN 88
            VAA EA K+AVWLRKFL D ++  ++N
Sbjct: 1126 VAACEAAKEAVWLRKFLHDLEVVPNMN 1152

[Close]

BLAST of ClCG02G010045 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-14
Identity = 37/83 (44.58%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 2    LLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYV 61
            L +   D IL GYTD D   D D++ S+ G +F  +GG I W+S  Q C+  ST EAEY+
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYI 1225

Query: 62   AANEATKKAVWLRKFLTDQKLFQ 85
            AA E  K+ +WL++FL +  L Q
Sbjct: 1226 AATETGKEMIWLKRFLQELGLHQ 1248

[Close]

BLAST of ClCG02G010045 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.4e-11
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 11  LTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKA 70
           L GY+D D+  D +S+ ST G +F LNGG + WRS KQ  +  S+ E EY+A +EAT++A
Sbjct: 71  LVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEA 130

Query: 71  VWL 74
           VWL
Sbjct: 131 VWL 133

[Close]

BLAST of ClCG02G010045 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 49.7 bits (117), Expect = 2.1e-05
Identity = 25/74 (33.78%), Postives = 44/74 (59.46%), Query Frame = 0


Query: 6    AKDSILTGYTDCDFQTDKDSKNSTLGSVF-ILNGGTIVWRSTKQSCIVDSTMEAEYVAAN 65
            A ++ + GY D D+   +  + ST G +F + +   I W + +Q+ +  S+ EAEY+A  
Sbjct: 1243 AFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALF 1302

Query: 66   EATKKAVWLRKFLT 79
            EA ++A+WL+  LT
Sbjct: 1303 EAVREALWLKFLLT 1316

[Close]

BLAST of ClCG02G010045 vs. ExPASy TrEMBL
Match: A0A5A7SIN2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2405G00060 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.6e-27
Identity = 64/87 (73.56%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 1   MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEY 60
           ML+Y AKD ILTGYTD DFQTDKDS+ STLGSVF LNGG +VWRS KQ CI DSTMEAEY
Sbjct: 834 MLVYGAKDLILTGYTDSDFQTDKDSRKSTLGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 893

Query: 61  VAANEATKKAVWLRKFLTDQKLFQHVN 88
           VAA EA K+AVWLRKFL D ++  ++N
Sbjct: 894 VAACEAVKEAVWLRKFLHDLEVVPNMN 920

[Close]

BLAST of ClCG02G010045 vs. ExPASy TrEMBL
Match: A0A5D3C9Z1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold118G00460 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.0e-27
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 1  MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEY 60
          ML+Y AKD ILTGYTD DFQTDKDS+ STLGSVF LNGG ++WRS KQ CI DSTMEAEY
Sbjct: 1  MLVYGAKDLILTGYTDSDFQTDKDSRKSTLGSVFTLNGGAVIWRSIKQGCIADSTMEAEY 60

Query: 61 VAANEATKKAVWLRKFLTDQKLFQHVN 88
          VAA EA K+AVWLRKFL D ++  ++N
Sbjct: 61 VAACEAAKEAVWLRKFLHDLEVVPNMN 87

[Close]

BLAST of ClCG02G010045 vs. ExPASy TrEMBL
Match: A0A5A7U8A7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold101G00340 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.9e-27
Identity = 64/87 (73.56%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 1   MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEY 60
           M++Y AKD ILTGYTD DFQTDKDS+ ST GSV ILNGG IVWRS KQ CI DSTMEAEY
Sbjct: 401 MVVYGAKDLILTGYTDSDFQTDKDSRKSTWGSVIILNGGAIVWRSIKQGCIADSTMEAEY 460

Query: 61  VAANEATKKAVWLRKFLTDQKLFQHVN 88
           VAA EATK+AVWLRKFL D ++  ++N
Sbjct: 461 VAAFEATKEAVWLRKFLHDLEVVLNMN 487

[Close]

BLAST of ClCG02G010045 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.7e-27
Identity = 63/87 (72.41%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1    MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEY 60
            ML+Y AKD ILTGYTD DFQTDKDS+ ST GSVF LNGG +VWRS KQ CI DSTMEAEY
Sbjct: 1066 MLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 1125

Query: 61   VAANEATKKAVWLRKFLTDQKLFQHVN 88
            VAA EA K+AVWLRKFL D ++  ++N
Sbjct: 1126 VAACEAAKEAVWLRKFLHDLEVVPNMN 1152

[Close]

BLAST of ClCG02G010045 vs. ExPASy TrEMBL
Match: A0A5A7VD16 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00080 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.7e-27
Identity = 62/87 (71.26%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1   MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEY 60
           ML+Y AKD ILTGYTD DFQTDKDS+ ST GSVF LNGG +VWR+ KQ CI DSTMEAEY
Sbjct: 109 MLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRNIKQGCIADSTMEAEY 168

Query: 61  VAANEATKKAVWLRKFLTDQKLFQHVN 88
           VAA E  KKAVW RKFL D ++F ++N
Sbjct: 169 VAACEVAKKAVWFRKFLHDLEVFPNMN 195

[Close]

BLAST of ClCG02G010045 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 53.5 bits (127), Expect = 1.0e-07
Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 0


Query: 14  YTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWL 73
           ++D  FQ+ KD++ ST G    L    I W+S KQ  +  S+ EAEY A + AT + +WL
Sbjct: 445 FSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWL 504

Query: 74  RKFLTDQKL 83
            +F  + +L
Sbjct: 505 AQFFRELQL 513

The following BLAST results are available for this feature:

BLAST of ClCG02G010045 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025159.1	3.2e-27	73.56	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0049828.1	4.2e-27	72.41	gag/pol protein [Cucumis melo var. makuwa] >TYK08693.1 gag/pol protein [Cucumis ...	[more]
KAA0051544.1	1.2e-26	73.56	gag/pol protein [Cucumis melo var. makuwa] >TYK21279.1 gag/pol protein [Cucumis ...	[more]
KAA0042496.1	1.6e-26	72.41	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025945.1	1.6e-26	72.41	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]

BLAST of ClCG02G010045 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.9e-14	44.58	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	4.4e-11	50.79	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P04146	2.1e-05	33.78	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of ClCG02G010045 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SIN2	1.6e-27	73.56	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2405G000...	[more]
A0A5D3C9Z1	2.0e-27	72.41	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold118G0046...	[more]
A0A5A7U8A7	5.9e-27	73.56	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold101G0034...	[more]
A0A5A7TZD0	7.7e-27	72.41	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7VD16	7.7e-27	71.26	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G0008...	[more]

BLAST of ClCG02G010045 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.0e-07	37.68	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 12..85 e-value: 6.82244E-28 score: 96.3833

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G010045.1	ClCG02G010045.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding