ClCG02G008960 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG02G008960
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr02: 12422447 .. 12424228 (-)
RNA-Seq ExpressionClCG02G008960
SyntenyClCG02G008960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCCATGGAAGCCGTTGGTGCCGAGGAAATGGAGGCGGTAGCCGAGGAGAGAGAGGAGGAGGAGGAAAATTGTAGCGTCCAAGATTGTGTCAATGCCTCTTTTGATTGCAACTCGTTCGAACAGAGGAGCGGCCATTGGTGATTTGGTTAGACACGAAATTGTTGTCATATCAGAAGTTCTAAAATTGGAAAAGCTCTAAATACATAAAACAAGGTGGATGCCCATATTGAAGGGTTCAAATGATTTTTGGCCTCTCCCCAGATTTTTAATGAAATATGATTTTTTGCTGACATCAATGTTGTGTGAATTTATCGAACTACTCCCAAAATCGTTATCCAGAGGCATCCCCACAAGTTCTGCTCTCGACTCTCGATCTTGTTTCTCGATTCCTATTATCGACACTCGGTCTCAATCCACGATGGTCAACCATAGTTGACCTTATAGACGAGATCACTCTCGGTCTCACTCTCTTGCTACTCTCGCTCTCATTCCTCGTAAGCTGACACTCAACCATTGTATTAGATTTTTGGGTAATTAATGTGTGTCGTACATCAATCAATCTAACAGTAAACACGACCTTTCAAATCAATTGAGTGAATCAAGTTAATTGTTTAACAAGTTTCTCTTCATATGTGTACACTTTTCCACTCAAAAAACCAAACAAAGCAAAGCAAACAAAAAAACCTCAGAAATCTCACTATCTCGTGGAAAATCCATAGACATTTTATATAACTAAGCAATCAACTTCGAACTCCAAGTAAGTAATCCATGGACTTCAAAATTTTTCCCTTCTATTTAACATTGTATTATCACAAAACTGTTGGGTGACTTTTGGCACAATCACGAGAGAGCGAGAGACGAGCTAGAGATAGATAATGTTTAACGACTTAGAGCGAGCTACAAGATTACACGAAGTGAGGGTCGAGAGTAGAACACGTGGTGGTAGGAATTGGGTAAGTACTAGGCAAGAGGACCAAGAGCTAATGAGAGGATCAAGATTCGAGAGCACGAAAAGATGATTGTACTATTTCGTGACAAGAACCGAGAAACAAAGCGAGATGCAAGAGCGAGAAGCGAGAGCGAGAGTTTGTAACGAGGAGTGAGACTCGTTAGCGAGATTTTGACAGAAAGCATTATTTTGTAATTGGCTTTTCTTTTTTTCTCTTTTGAAGGATGGATAGGAAGCAATTGTTTATTCGACATGGTGGGACATGGGATGACATCAAACAAAGTTACGACGGAGGTGTTTTAAAGGGCATCGTTGTGTCAATCACATTGACATACCAAGAACTGAAGGACCGGGTATATGGAATAGCAAGGGTAGATCCATCATAGTTCGACATTGTAAATATAAGGGTTCAGTATAAGTTGGACTCGTATGGACCTGTGGTATGCATAATCGACAATGACAACATTAGATTTCTGTTGGTAGAGGCGAATTTGAATAGACCTCAGATTTTTGTCAGTATTGAGAGGAACAATCTGACAAAGCATCAGGAGTATTACACAGAATATCAAACAGAACATCAGACTGAACTATGGATAGAACAACACACCATTGGTGAGTCTGACATTTTCCCTTCCGTGGTATCCATGGGAAATGACAACACTAATTCATGGAATGAAAGAGATGTTTCACAACATTATAATGGTCGGAAGAGGGTCGGTAATTCTGAAGGAGATGCACCCATGGTTAATGATTTGAATTTCAATTCTAAAGGTGAGTGGGTTAAGAATAATCATGAGGATGTTGGGTGGGATCCTCATGTAAATTAG

mRNA sequence

ATGGAGGCCATGGAAGCCGTTGGTGCCGAGGAAATGGAGGCGGTAGCCGAGGAGAGAGAGGAGGAGGAGGAAAATTGTAGCGTCCAAGATTGTGTCAATGCCTCTTTTGATTGCAACTCGTTCGAACAGAGGAGCGGCCATTGGATGGATAGGAAGCAATTGTTTATTCGACATGGTGGGACATGGGATGACATCAAACAAAGTTACGACGGAGGTGTTTTAAAGGGCATCGTTGTGTCAATCACATTGACATACCAAGAACTGAAGGACCGGGCGAATTTGAATAGACCTCAGATTTTTGTCAGTATTGAGAGGAACAATCTGACAAAGCATCAGGAGTATTACACAGAATATCAAACAGAACATCAGACTGAACTATGGATAGAACAACACACCATTGGTGAGTCTGACATTTTCCCTTCCGTGGTATCCATGGGAAATGACAACACTAATTCATGGAATGAAAGAGATGTTTCACAACATTATAATGGTCGGAAGAGGGTCGGTAATTCTGAAGGAGATGCACCCATGGTTAATGATTTGAATTTCAATTCTAAAGGTGAGTGGGTTAAGAATAATCATGAGGATGTTGGGTGGGATCCTCATGTAAATTAG

Coding sequence (CDS)

ATGGAGGCCATGGAAGCCGTTGGTGCCGAGGAAATGGAGGCGGTAGCCGAGGAGAGAGAGGAGGAGGAGGAAAATTGTAGCGTCCAAGATTGTGTCAATGCCTCTTTTGATTGCAACTCGTTCGAACAGAGGAGCGGCCATTGGATGGATAGGAAGCAATTGTTTATTCGACATGGTGGGACATGGGATGACATCAAACAAAGTTACGACGGAGGTGTTTTAAAGGGCATCGTTGTGTCAATCACATTGACATACCAAGAACTGAAGGACCGGGCGAATTTGAATAGACCTCAGATTTTTGTCAGTATTGAGAGGAACAATCTGACAAAGCATCAGGAGTATTACACAGAATATCAAACAGAACATCAGACTGAACTATGGATAGAACAACACACCATTGGTGAGTCTGACATTTTCCCTTCCGTGGTATCCATGGGAAATGACAACACTAATTCATGGAATGAAAGAGATGTTTCACAACATTATAATGGTCGGAAGAGGGTCGGTAATTCTGAAGGAGATGCACCCATGGTTAATGATTTGAATTTCAATTCTAAAGGTGAGTGGGTTAAGAATAATCATGAGGATGTTGGGTGGGATCCTCATGTAAATTAG

Protein sequence

MEAMEAVGAEEMEAVAEEREEEEENCSVQDCVNASFDCNSFEQRSGHWMDRKQLFIRHGGTWDDIKQSYDGGVLKGIVVSITLTYQELKDRANLNRPQIFVSIERNNLTKHQEYYTEYQTEHQTELWIEQHTIGESDIFPSVVSMGNDNTNSWNERDVSQHYNGRKRVGNSEGDAPMVNDLNFNSKGEWVKNNHEDVGWDPHVN
Homology
[Close]
BLAST of ClCG02G008960 vs. NCBI nr
Match: XP_022154925.1 (uncharacterized protein LOC111022071 [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 3.4e-05
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 52 KQLFIRHGGTWDDIKQSYDGGVLKGIVVSITLTYQELKDR 92
          K LFIR GGTW+D   SY GG LKGI+V +T+TY+ELK+R
Sbjct: 5  KSLFIRFGGTWEDNTNSYVGGELKGIIVPLTVTYKELKNR 44

[Close]
BLAST of ClCG02G008960 vs. ExPASy TrEMBL
Match: A0A6J1DL08 (uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022071 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-05
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 52 KQLFIRHGGTWDDIKQSYDGGVLKGIVVSITLTYQELKDR 92
          K LFIR GGTW+D   SY GG LKGI+V +T+TY+ELK+R
Sbjct: 5  KSLFIRFGGTWEDNTNSYVGGELKGIIVPLTVTYKELKNR 44

[Close]
BLAST of ClCG02G008960 vs. ExPASy TrEMBL
Match: A0A6J1DPC2 (uncharacterized protein LOC111022579 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022579 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.0e-04
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 49 MDRKQLFIRHGGTWDDIKQSYDGGVLKGIVVSITLTYQELKD 91
          M R ++F+R+GG W+D +  Y GG+LKGIVV   +TYQ+L D
Sbjct: 1  MTRVRIFVRYGGVWNDKQTEYQGGLLKGIVVCKEITYQDLLD 42

[Close]
BLAST of ClCG02G008960 vs. ExPASy TrEMBL
Match: A0A6J1DRN0 (uncharacterized protein LOC111022579 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022579 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.0e-04
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 49 MDRKQLFIRHGGTWDDIKQSYDGGVLKGIVVSITLTYQELKD 91
          M R ++F+R+GG W+D +  Y GG+LKGIVV   +TYQ+L D
Sbjct: 1  MTRVRIFVRYGGVWNDKQTEYQGGLLKGIVVCKEITYQDLLD 42

The following BLAST results are available for this feature:
BLAST of ClCG02G008960 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022154925.13.4e-0565.00uncharacterized protein LOC111022071 [Momordica charantia][more]
BLAST of ClCG02G008960 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG02G008960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DL081.6e-0565.00uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DPC29.0e-0452.38uncharacterized protein LOC111022579 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DRN09.0e-0452.38uncharacterized protein LOC111022579 isoform X1 OS=Momordica charantia OX=3673 G... [more]
BLAST of ClCG02G008960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G008960.1ClCG02G008960.1mRNA