ClCG02G008820 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G008820
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
Location	CG_Chr02: 12034623 .. 12036169 (-)
RNA-Seq Expression	ClCG02G008820
Synteny	ClCG02G008820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATGTGAAAGGTTGCTGTTGCTGTTGCTGCAAGTCTTAAACTTTGAGTTTAAAAGGGTATAATTGGAAGTAATTATATATATATATATGAGTATTTGGCACAGAAAGCAAGGCAGGGTGTGGAAGGTAGGTGTAAAGGAGTAGATACAGCTTGGAATTTGGAAGGCAACTAAAGTGGACGACCCCACTTCACCATTTACTACCCCCTCTCCACATTCTTTCTTTTTCAACCTTCATCTTCATCTTCTTCCTTAATCTTCTCTCTATTCATTTGGGCCCCCTTCTCACCAACCTCTCTTCAACTTCAATTTCAAGCTATTTTTCACTCCCTCCGATCAATTCCCAATCCCATCGCGCTTCTTTCTCTCTTTTTCAATCCTATTTGCGTTGCGTACGTATCTTTCCTTCTGCTTTTTACTTTCGATTTCTTCAGTTTCATTCGCTTGTTGGTTGATCTTTGATTTTTGGTGCGCGGTTCTGTCTAATGAAGCTGTATTTGTATCCGATTCGGTCCTCGAATACGACTTTTCCACTTCCTTAATTTGAATCTGGTGTCGATTGGTTTAATTTTTCGACCTTGAAAGTGATTTTAGGGTTTTGTTGCTCAGTCGTTTGATGAATAAATCAAATGATTTTTATCTGTTTTTGCTGCCAATGCCTTTTTTCCCCCTTTTCATCTCTCCTGCTTTATGGCTGTGTTTGTTGTTTTGTTTAGACTGTCCAAAAACAGGAATAGAAACTTGGATTTATATAATACATAGTTAATTTGTAGGTTTGTTTTTTCAAATTTTACAGGTGTCATAATTTCGGTTTTAGGGCAATCTATAAGAATTCATATTCTAAGATACATGAATTTGATATAATGACTTTTGTTTCTTCTTCGTGAAGATTGTCTGTAGGGGATTTGATAGGTAAGGTTGGCCCTTGTTGTTCCCTTTCCACTTTTGTTTGTTCTGTATATCCCACTTTCTCCAGATTGTCGCTGATTTGATTTCTATTTCAATGCGATAATTTAGAAAGATGATATGACAAGATTTTCTTGATTTGACAGAAAGTTCCCATCATTCTATAAGTCCAGAATTATAACTCAATTCATCCATGCTTACCCAGAACTGTTTACTAGCTGTTTTTTTTTTATAAATTTTGGAATATGATAGCTGAAAATGGGAAGCAAAGCACCAAGCTGGGCTGATCAGTGGGGTTCGGGAAATTATGGAGTTGAAGATGACGACAACAAGGCAGTGACGAAGAAAGGGAGCAGCAATGGCAATAGTAGCAAGAAGATGGCAGAGGTAAAGGCAGCAGCCTCGGCTGGATTTGTGAAGGCAAAGGCCGTTGCAACTGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAATGACTCTAAATATGCTTGGACTCTCCATTTGATCATTTTTTCTCTTAAATATAACTTGTAGTCTGAAAACTTTTGTAGTTTTGTGAAAACAAGCCCAACATTGCATCTGATTTTTTCTAG

mRNA sequence

ATGAAATGTGAAAGGCAACTAAAGTGGACGACCCCACTTCACCATTTACTACCCCCTCTCCACATTCTTTCTTTTTCAACCTTCATCTTCATCTTCTTCCTTAATCTTCTCTCTATTCATTTGGGCCCCCTTCTCACCAACCTCTCTTCAACTTCAATTTCAAGCTATTTTTCACTCCCTCCGATCAATTCCCAATCCCATCGCGCTTCTTTCTCTCTTTTTCAATCCTATTTGCGTTGCCTGAAAATGGGAAGCAAAGCACCAAGCTGGGCTGATCAGTGGGGTTCGGGAAATTATGGAGTTGAAGATGACGACAACAAGGCAGTGACGAAGAAAGGGAGCAGCAATGGCAATAGTAGCAAGAAGATGGCAGAGGTAAAGGCAGCAGCCTCGGCTGGATTTGTGAAGGCAAAGGCCGTTGCAACTGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGTTTTGTGAAAACAAGCCCAACATTGCATCTGATTTTTTCTAG

Coding sequence (CDS)

ATGAAATGTGAAAGGCAACTAAAGTGGACGACCCCACTTCACCATTTACTACCCCCTCTCCACATTCTTTCTTTTTCAACCTTCATCTTCATCTTCTTCCTTAATCTTCTCTCTATTCATTTGGGCCCCCTTCTCACCAACCTCTCTTCAACTTCAATTTCAAGCTATTTTTCACTCCCTCCGATCAATTCCCAATCCCATCGCGCTTCTTTCTCTCTTTTTCAATCCTATTTGCGTTGCCTGAAAATGGGAAGCAAAGCACCAAGCTGGGCTGATCAGTGGGGTTCGGGAAATTATGGAGTTGAAGATGACGACAACAAGGCAGTGACGAAGAAAGGGAGCAGCAATGGCAATAGTAGCAAGAAGATGGCAGAGGTAAAGGCAGCAGCCTCGGCTGGATTTGTGAAGGCAAAGGCCGTTGCAACTGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGTTTTGTGAAAACAAGCCCAACATTGCATCTGATTTTTTCTAG

Protein sequence

MKCERQLKWTTPLHHLLPPLHILSFSTFIFIFFLNLLSIHLGPLLTNLSSTSISSYFSLPPINSQSHRASFSLFQSYLRCLKMGSKAPSWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVATVGAQKVKSGTSVGIKWVKNQYQKKFCENKPNIASDFF

Homology

[Close]

BLAST of ClCG02G008820 vs. NCBI nr
Match: KAA0059574.1 (hypothetical protein E6C27_scaffold4837G00020 [Cucumis melo var. makuwa] >KAE8652289.1 hypothetical protein Csa_022099 [Cucumis sativus] >TYK24204.1 hypothetical protein E5676_scaffold27G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 2.0e-33
Identity = 83/85 (97.65%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 83  MGSKAPSWADQWGSGNYGVEDDD-NKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 142
           MGSKAPSWADQWGSGNYGVEDDD N AVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA
Sbjct: 1   MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60

Query: 143 TVGAQKVKSGTSVGIKWVKNQYQKK 167
           TVGAQKVKSGTSVGIKWVKNQYQKK
Sbjct: 61  TVGAQKVKSGTSVGIKWVKNQYQKK 85

[Close]

BLAST of ClCG02G008820 vs. NCBI nr
Match: KAG7034974.1 (hypothetical protein SDJN02_01767, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.1 bits (375), Expect = 3.7e-32
Identity = 99/148 (66.89%), Postives = 103/148 (69.59%), Query Frame = 0


Query: 25  FST-FIFIFFLN--LLSIHL---GPLLTNLSSTSISSYFSLPPINSQSHRASFSLFQSYL 84
           FST FIFIFFLN   L+  L   GP LTNL + +                          
Sbjct: 53  FSTVFIFIFFLNPPFLNPSLTLQGPTLTNLLNVNFK------------------------ 112

Query: 85  RCLKMGSKAPSWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAK 144
             LKMGSKAPSWADQWGSGNYGVEDDD K V KKGSSNG+SSKKM EVKAAASAGFVKAK
Sbjct: 113 --LKMGSKAPSWADQWGSGNYGVEDDD-KMVAKKGSSNGSSSKKMTEVKAAASAGFVKAK 172

Query: 145 AVATVGAQKVKSGTSVGIKWVKNQYQKK 167
           AVA VGAQKVKSGTSVGIKWVKNQYQKK
Sbjct: 173 AVAAVGAQKVKSGTSVGIKWVKNQYQKK 173

[Close]

BLAST of ClCG02G008820 vs. NCBI nr
Match: KAG7010736.1 (hypothetical protein SDJN02_27532, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.7 bits (374), Expect = 4.9e-32
Identity = 77/84 (91.67%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 83  MGSKAPSWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVAT 142
           MGSKAPSWADQWGSG+YGVEDDDN A+TKKGSSNGNSSKKMA+VKAAASAGFVKAK+ A 
Sbjct: 1   MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA 60

Query: 143 VGAQKVKSGTSVGIKWVKNQYQKK 167
           VGAQKVKSGTSVGIKWVKNQYQKK
Sbjct: 61  VGAQKVKSGTSVGIKWVKNQYQKK 84

[Close]

BLAST of ClCG02G008820 vs. NCBI nr
Match: KAG6570886.1 (hypothetical protein SDJN03_29801, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148.7 bits (374), Expect = 4.9e-32
Identity = 77/84 (91.67%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 83  MGSKAPSWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVAT 142
           MGSKAPSWADQWGSG+YGVEDDDN A+TKKGSSNGNSSKKMA+VKAAASAGFVKAK+ A 
Sbjct: 1   MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA 60

Query: 143 VGAQKVKSGTSVGIKWVKNQYQKK 167
           VGAQKVKSGTSVGIKWVKNQYQKK
Sbjct: 61  VGAQKVKSGTSVGIKWVKNQYQKK 84

[Close]

BLAST of ClCG02G008820 vs. NCBI nr
Match: KAG6604861.1 (hypothetical protein SDJN03_02178, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.0 bits (367), Expect = 3.2e-31
Identity = 79/86 (91.86%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 81  LKMGSKAPSWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAV 140
           LKMGSKAPSWADQWGSGNYGVEDDD K V KKGS NG+SSKKM EVKAAASAGFVKAKAV
Sbjct: 78  LKMGSKAPSWADQWGSGNYGVEDDD-KMVAKKGSGNGSSSKKMTEVKAAASAGFVKAKAV 137

Query: 141 ATVGAQKVKSGTSVGIKWVKNQYQKK 167
           A VGAQKVKSGTSVGIKWVKNQYQKK
Sbjct: 138 AAVGAQKVKSGTSVGIKWVKNQYQKK 162

[Close]

BLAST of ClCG02G008820 vs. ExPASy TrEMBL
Match: A0A0A0LR11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418340 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 2.5e-34
Identity = 95/140 (67.86%), Postives = 100/140 (71.43%), Query Frame = 0


Query: 28  FIFIFFLNLLSIHLGPLLTNLSSTSISSYFSLPPINSQSHRASFSLFQSYLRCLKMGSKA 87
           F FIFF N LS+ L  +  N                            +++  LKMGSKA
Sbjct: 58  FFFIFFFNPLSLSLTNVFFNF---------------------------NFIFKLKMGSKA 117

Query: 88  PSWADQWGSGNYGVEDDD-NKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVATVGAQ 147
           PSWADQWGSGNYGVEDDD N AVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVATVGAQ
Sbjct: 118 PSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVATVGAQ 170

Query: 148 KVKSGTSVGIKWVKNQYQKK 167
           KVKSGTSVGIKWVKNQYQKK
Sbjct: 178 KVKSGTSVGIKWVKNQYQKK 170

[Close]

BLAST of ClCG02G008820 vs. ExPASy TrEMBL
Match: A0A5D3DKS5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00040 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 9.6e-34
Identity = 83/85 (97.65%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 83  MGSKAPSWADQWGSGNYGVEDDD-NKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 142
           MGSKAPSWADQWGSGNYGVEDDD N AVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA
Sbjct: 1   MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60

Query: 143 TVGAQKVKSGTSVGIKWVKNQYQKK 167
           TVGAQKVKSGTSVGIKWVKNQYQKK
Sbjct: 61  TVGAQKVKSGTSVGIKWVKNQYQKK 85

[Close]

BLAST of ClCG02G008820 vs. ExPASy TrEMBL
Match: A0A5C7HG95 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020628 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.9e-26
Identity = 70/84 (83.33%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 83  MGSKAPSWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVAT 142
           MGSKAPSWADQWGSG++G E+DDNK VTKK SS+G SSKKMAE KAAASAGF KAKA A+
Sbjct: 1   MGSKAPSWADQWGSGSFGDEEDDNKLVTKK-SSSGGSSKKMAEAKAAASAGFDKAKAAAS 60

Query: 143 VGAQKVKSGTSVGIKWVKNQYQKK 167
           VGAQKVKSGTSVG+KWVK QYQKK
Sbjct: 61  VGAQKVKSGTSVGLKWVKKQYQKK 83

[Close]

BLAST of ClCG02G008820 vs. ExPASy TrEMBL
Match: V4UEV4 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017336mg PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 8.4e-22
Identity = 60/84 (71.43%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 83  MGSKAPSWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVAT 142
           MGSKAPSWADQWG+G +GV+++D+K VTK  SS+G +  K+ EVKAAASAGF KAK+ A 
Sbjct: 1   MGSKAPSWADQWGTGGFGVDEEDDKLVTKNASSSGGN--KITEVKAAASAGFDKAKSAAA 60

Query: 143 VGAQKVKSGTSVGIKWVKNQYQKK 167
           VGAQKVK+GTS GIKWVK QYQKK
Sbjct: 61  VGAQKVKAGTSAGIKWVKKQYQKK 82

[Close]

BLAST of ClCG02G008820 vs. ExPASy TrEMBL
Match: A0A2P5EE64 (CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase OS=Trema orientale OX=63057 GN=TorRG33x02_203810 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.5e-21
Identity = 68/106 (64.15%), Postives = 76/106 (71.70%), Query Frame = 0


Query: 72  SLFQSYLRCLKMGSKAPSWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAAS 131
           S+  SY+R   MGSKAPSW+DQWG  N+GVE DD+KA T KG  +G SSKKMAE KA AS
Sbjct: 2   SILISYIR-NSMGSKAPSWSDQWGGNNFGVEGDDDKAGTNKGKGSG-SSKKMAEAKAMAS 61

Query: 132 AGFVKAKAVATV-----------GAQKVKSGTSVGIKWVKNQYQKK 167
           AG  KAKA A V           GAQKVKSGTS+GIKWVKNQYQK+
Sbjct: 62  AGLGKAKAAAAVGADKAKVAAIFGAQKVKSGTSLGIKWVKNQYQKR 105

[Close]

BLAST of ClCG02G008820 vs. TAIR 10
Match: AT3G48180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19020.1); Has 84 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-05
Identity = 32/82 (39.02%), Postives = 43/82 (52.44%), Query Frame = 0


Query: 89  SWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVATVGAQKV 148
           SWA+QW S      +  +   T  G   G +S K    K    AG  K KA A+ G +KV
Sbjct: 5   SWAEQWDS------NQQSSGKTTHGGEGGGASSK---YKEKVGAGLGKTKAAASSGLKKV 64

Query: 149 KSGTSVGIKWVKNQYQKKFCEN 171
           K GTS+G+ WVK++Y K   +N
Sbjct: 65  KIGTSLGLNWVKDKYNKTTTKN 77

[Close]

BLAST of ClCG02G008820 vs. TAIR 10
Match: AT1G19020.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48180.1); Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 6.0e-04
Identity = 25/77 (32.47%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 89  SWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVATVGAQKV 148
           SWADQW +     +     +     SS   ++    + K     G  K KAVA+ G +K+
Sbjct: 5   SWADQWDNSGDSAKGGRIGSGAVVRSSGSGATSNTTKYKEKMGQGLDKTKAVASSGFKKL 64

Query: 149 KSGTSVGIKWVKNQYQK 166
           K+G+++G +WVK++Y K
Sbjct: 65  KTGSAIGFRWVKDKYHK 81

The following BLAST results are available for this feature:

BLAST of ClCG02G008820 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059574.1	2.0e-33	97.65	hypothetical protein E6C27_scaffold4837G00020 [Cucumis melo var. makuwa] >KAE865...	[more]
KAG7034974.1	3.7e-32	66.89	hypothetical protein SDJN02_01767, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7010736.1	4.9e-32	91.67	hypothetical protein SDJN02_27532, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6570886.1	4.9e-32	91.67	hypothetical protein SDJN03_29801, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6604861.1	3.2e-31	91.86	hypothetical protein SDJN03_02178, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of ClCG02G008820 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG02G008820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR11	2.5e-34	67.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418340 PE=4 SV=1	[more]
A0A5D3DKS5	9.6e-34	97.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5C7HG95	1.9e-26	83.33	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020628 PE=4 SV=1	[more]
V4UEV4	8.4e-22	71.43	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017336mg PE=4 ...	[more]
A0A2P5EE64	2.5e-21	64.15	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase OS=Trema orien...	[more]

BLAST of ClCG02G008820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48180.1	1.4e-05	39.02	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G19020.1	6.0e-04	32.47	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33386:SF13	ANKYRIN REPEAT PROTEIN	coord: 83..167
None	No IPR available	PANTHER	PTHR33386	OS02G0740600 PROTEIN	coord: 83..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G008820.2	ClCG02G008820.2	mRNA