ClCG02G007770 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG02G007770
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description50S ribosomal protein L33, chloroplastic
LocationCG_Chr02: 9423569 .. 9423769 (+)
RNA-Seq ExpressionClCG02G007770
SyntenyClCG02G007770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAGGGTAAAGATGCCCGAGTAACAGTTATTTTGGAATGTACTCGTTGTGTTTGAAACGATGTTAATAAGGAATCAATCGGAATTTCCAGATATATTACTCAAAAGAATCGACACAATACCCCTAGTCGATTGGAATTGGGAAAATTCTGTCCCCGTTATTACAAACATACGATTCATGGGGAGATAAAGAAATAG

mRNA sequence

ATGGCCAAGGGTAAAGATGCCCGAGTAACAGTTATTTTGGAATGTACTCGTTGTGAATCAATCGGAATTTCCAGATATATTACTCAAAAGAATCGACACAATACCCCTAGTCGATTGGAATTGGGAAAATTCTGTCCCCGTTATTACAAACATACGATTCATGGGGAGATAAAGAAATAG

Coding sequence (CDS)

ATGGCCAAGGGTAAAGATGCCCGAGTAACAGTTATTTTGGAATGTACTCGTTGTGAATCAATCGGAATTTCCAGATATATTACTCAAAAGAATCGACACAATACCCCTAGTCGATTGGAATTGGGAAAATTCTGTCCCCGTTATTACAAACATACGATTCATGGGGAGATAAAGAAATAG

Protein sequence

MAKGKDARVTVILECTRCESIGISRYITQKNRHNTPSRLELGKFCPRYYKHTIHGEIKK
Homology
[Close]
BLAST of ClCG02G007770 vs. NCBI nr
Match: YP_004841804.1 (ribosomal protein L33 [Cucumis melo subsp. melo] >YP_009236301.1 ribosomal protein L33 [Gynostemma pentaphyllum] >YP_009346505.1 ribosomal protein L33 [Cucumis x hytivus] >YP_009420815.1 ribosomal protein L33 [Citrullus colocynthis] >YP_009431578.1 ribosomal protein L33 [Citrullus amarus] >YP_009431663.1 ribosomal protein L33 [Citrullus rehmii] >YP_009440178.1 ribosomal protein L33 [Gynostemma longipes] >YP_009440265.1 ribosomal protein L33 [Gynostemma burmanicum (nom. inval.)] >YP_009440352.1 ribosomal protein L33 [Gynostemma pubescens] >YP_009526323.1 ribosomal protein L33 [Hemsleya lijiangensis] >YP_009751759.1 ribosomal protein L33 [Herpetospermum pedunculosum] >YP_009752348.1 ribosomal protein L33 [Bryonia marmorata] >YP_009860094.1 ribosomal protein L33 [Cucumis melo subsp. agrestis] >YP_010119755.1 ribosomal protein L33 [Hemsleya zhejiangensis] >YP_010131115.1 ribosomal protein L33 [Benincasa hispida] >AHM88780.1 ribosomal protein L33 [Lagenaria siceraria] >APW82482.1 ribosomal protein L33 [Citrullus lanatus subsp. vulgaris] >ASY96612.1 ribosomal protein L33 [Cucumis melo var. conomon] >ASY96699.1 ribosomal protein L33 [Cucumis melo var. makuwa] >ASY96786.1 ribosomal protein L33 [Cucumis melo var. momordica] >ASY96873.1 ribosomal protein L33 [Cucumis melo var. dudaim] >ASY96960.1 ribosomal protein L33 [Cucumis melo var. cantalupo] >ASY97134.1 ribosomal protein L33 [Cucumis melo var. inodorus] >ASY97308.1 ribosomal protein L33 [Cucumis melo var. flexuosus] >AXU40454.1 ribosomal protein L33 [Gomphogyne cissiformis var. villosa] >AXU40628.1 ribosomal protein L33 [Gomphogyne cissiformis var. cissiformis] >QCY72863.1 ribosomal protein L33 [Cucumis hystrix] >QRW36576.1 ribosomal protein L33 [Cucumis melo] >QZL38614.1 ribosomal protein L33 [Citrullus naudinianus] >QZL38702.1 ribosomal protein L33 [Citrullus ecirrhosus])

HSP 1 Score: 114.4 bits (285), Expect = 3.4e-22
Identity = 57/66 (86.36%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1  MAKGKDARVTVILECTRC-------ESIGISRYITQKNRHNTPSRLELGKFCPRYYKHTI 60
          MAKGKDARVTVILECTRC       ESIGISRYITQKNRHNTPSRLEL KFCPR YKHTI
Sbjct: 1  MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 60

[Close]
BLAST of ClCG02G007770 vs. NCBI nr
Match: YP_009430648.1 (ribosomal protein L33 [Gynostemma cardiospermum] >YP_009439825.1 ribosomal protein L33 [Gynostemma laxiflorum] >YP_010015160.1 ribosomal protein L33 [Gynostemma yixingense] >ART65113.1 ribosomal protein L33 [Gynostemma cardiospermum] >ATG86693.1 ribosomal protein L33 [Gynostemma laxiflorum] >QOI14285.1 ribosomal protein L33 [Gynostemma yixingense])

HSP 1 Score: 114.4 bits (285), Expect = 3.4e-22
Identity = 57/66 (86.36%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1  MAKGKDARVTVILECTRC-------ESIGISRYITQKNRHNTPSRLELGKFCPRYYKHTI 60
          MAKGKDARVTVILECTRC       ESIGISRYITQKNRHNTPSRLEL KFCPR YKHTI
Sbjct: 1  MAKGKDARVTVILECTRCVRNGVNNESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 60

[Close]
BLAST of ClCG02G007770 vs. NCBI nr
Match: QJF46404.1 (ribosomal protein L33 [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 3.4e-22
Identity = 57/66 (86.36%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1  MAKGKDARVTVILECTRC-------ESIGISRYITQKNRHNTPSRLELGKFCPRYYKHTI 60
          MAKGKDARVTVILECTRC       ESIGISRYITQKNRHNTPSRLEL KFCPR YKHTI
Sbjct: 14 MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 73

[Close]
BLAST of ClCG02G007770 vs. NCBI nr
Match: ALO22192.1 (ribosomal protein L33 [Cucurbita foetidissima] >ALO22902.1 ribosomal protein L33 [Cucurbita pedatifolia])

HSP 1 Score: 114.0 bits (284), Expect = 4.4e-22
Identity = 56/66 (84.85%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1  MAKGKDARVTVILECTRC-------ESIGISRYITQKNRHNTPSRLELGKFCPRYYKHTI 60
          MAKGKDARVTVILECTRC       ES+GISRYITQKNRHNTPSRLEL KFCPR YKHTI
Sbjct: 1  MAKGKDARVTVILECTRCVRNGINKESVGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 60

[Close]
BLAST of ClCG02G007770 vs. NCBI nr
Match: YP_009447471.1 (ribosomal protein L33 [Cucurbita maxima] >YP_009447556.1 ribosomal protein L33 [Cucurbita moschata] >YP_009505101.1 ribosomal protein L33 [Cucurbita pepo] >ALO21743.1 ribosomal protein L33 [Cucurbita argyrosperma] >ALO21799.1 ribosomal protein L33 [Cucurbita argyrosperma var. palmeri] >ALO21853.1 ribosomal protein L33 [Cucurbita argyrosperma subsp. sororia] >ALO21906.1 ribosomal protein L33 [Cucurbita cordata] >ALO21983.1 ribosomal protein L33 [Cucurbita digitata] >ALO22057.1 ribosomal protein L33 [Cucurbita ecuadorensis] >ALO22097.1 ribosomal protein L33 [Cucurbita ficifolia] >ALO22245.1 ribosomal protein L33 [Cucurbita lundelliana] >ALO22282.1 ribosomal protein L33 [Cucurbita maxima subsp. andreana] >ALO22424.1 ribosomal protein L33 [Cucurbita okeechobeensis] >ALO22485.1 ribosomal protein L33 [Cucurbita okeechobeensis subsp. martinezii] >ALO22546.1 ribosomal protein L33 [Cucurbita pepo subsp. fraterna] >ALO22618.1 ribosomal protein L33 [Cucurbita pepo subsp. ovifera] >ALO22719.1 ribosomal protein L33 [Cucurbita pepo var. ozarkana] >ALO22766.1 ribosomal protein L33 [Cucurbita pepo subsp. pepo] >ALO22827.1 ribosomal protein L33 [Cucurbita pepo var. texana])

HSP 1 Score: 114.0 bits (284), Expect = 4.4e-22
Identity = 56/66 (84.85%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1  MAKGKDARVTVILECTRC-------ESIGISRYITQKNRHNTPSRLELGKFCPRYYKHTI 60
          MAKGKDARVTVILECTRC       ES+GISRYITQKNRHNTPSRLEL KFCPR YKHTI
Sbjct: 1  MAKGKDARVTVILECTRCVRNGVNKESVGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 60

[Close]
BLAST of ClCG02G007770 vs. ExPASy Swiss-Prot
Match: Q2QD68 (50S ribosomal protein L33, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl33 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 9.8e-25
Identity = 56/66 (84.85%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1  MAKGKDARVTVILECTRC-------ESIGISRYITQKNRHNTPSRLELGKFCPRYYKHTI 60
          MAKGKDARVTVILECTRC       +SIGISRYITQKNRHNTPSRLEL KFCPR YKHTI
Sbjct: 1  MAKGKDARVTVILECTRCVRNGVNKQSIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 60

[Close]
BLAST of ClCG02G007770 vs. ExPASy Swiss-Prot
Match: B1A956 (50S ribosomal protein L33, chloroplastic OS=Carica papaya OX=3649 GN=rpl33 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 7.1e-23
Identity = 53/66 (80.30%), Postives = 54/66 (81.82%), Query Frame = 0 

Query: 1  MAKGKDARVTVILECTRC-------ESIGISRYITQKNRHNTPSRLELGKFCPRYYKHTI 60
          MAKGKDARVT+ILECT C       ES GISRYITQKNRHNTPSRLEL KFCP  YKHTI
Sbjct: 1  MAKGKDARVTIILECTSCVRNGVNKESTGISRYITQKNRHNTPSRLELRKFCPYCYKHTI 60

[Close]
BLAST of ClCG02G007770 vs. ExPASy Swiss-Prot
Match: Q09WZ6 (50S ribosomal protein L33, chloroplastic OS=Morus indica OX=248361 GN=rpl33 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.6e-22
Identity = 52/66 (78.79%), Postives = 54/66 (81.82%), Query Frame = 0 

Query: 1  MAKGKDARVTVILECTRC-------ESIGISRYITQKNRHNTPSRLELGKFCPRYYKHTI 60
          MAKGKDARVT+ILECT C       ES GISRYITQKNRHNTPSRLEL KFCP  YKHTI
Sbjct: 1  MAKGKDARVTIILECTSCLRNRVNKESRGISRYITQKNRHNTPSRLELRKFCPSCYKHTI 60

[Close]
BLAST of ClCG02G007770 vs. ExPASy Swiss-Prot
Match: A4QKL3 (50S ribosomal protein L33, chloroplastic OS=Capsella bursa-pastoris OX=3719 GN=rpl33 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.1e-22
Identity = 52/66 (78.79%), Postives = 53/66 (80.30%), Query Frame = 0 

Query: 1  MAKGKDARVTVILECTRC-------ESIGISRYITQKNRHNTPSRLELGKFCPRYYKHTI 60
          MAKGKD RVT+ILECT C       ES GISRYITQKNRHNTPSRLEL KFCP  YKHTI
Sbjct: 1  MAKGKDVRVTIILECTSCVRNDIKKESAGISRYITQKNRHNTPSRLELRKFCPYCYKHTI 60

[Close]
BLAST of ClCG02G007770 vs. ExPASy Swiss-Prot
Match: A4QKV2 (50S ribosomal protein L33, chloroplastic OS=Crucihimalaya wallichii OX=78192 GN=rpl33 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.1e-22
Identity = 52/66 (78.79%), Postives = 53/66 (80.30%), Query Frame = 0 

Query: 1  MAKGKDARVTVILECTRC-------ESIGISRYITQKNRHNTPSRLELGKFCPRYYKHTI 60
          MAKGKD RVT+ILECT C       ES GISRYITQKNRHNTPSRLEL KFCP  YKHTI
Sbjct: 1  MAKGKDVRVTIILECTSCVRNDIKKESAGISRYITQKNRHNTPSRLELRKFCPYCYKHTI 60

[Close]
BLAST of ClCG02G007770 vs. ExPASy TrEMBL
Match: G3ETR8 (50S ribosomal protein L33, chloroplastic OS=Cucumis melo subsp. melo OX=412675 GN=rpl33 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-22
Identity = 57/66 (86.36%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1  MAKGKDARVTVILECTRC-------ESIGISRYITQKNRHNTPSRLELGKFCPRYYKHTI 60
          MAKGKDARVTVILECTRC       ESIGISRYITQKNRHNTPSRLEL KFCPR YKHTI
Sbjct: 1  MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 60

[Close]
BLAST of ClCG02G007770 vs. ExPASy TrEMBL
Match: A0A249RZI5 (50S ribosomal protein L33, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=rpl33 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-22
Identity = 57/66 (86.36%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1  MAKGKDARVTVILECTRC-------ESIGISRYITQKNRHNTPSRLELGKFCPRYYKHTI 60
          MAKGKDARVTVILECTRC       ESIGISRYITQKNRHNTPSRLEL KFCPR YKHTI
Sbjct: 1  MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 60

[Close]
BLAST of ClCG02G007770 vs. ExPASy TrEMBL
Match: A0A109WXY7 (50S ribosomal protein L33, chloroplastic OS=Gynostemma pentaphyllum OX=182084 GN=rpl33 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-22
Identity = 57/66 (86.36%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1  MAKGKDARVTVILECTRC-------ESIGISRYITQKNRHNTPSRLELGKFCPRYYKHTI 60
          MAKGKDARVTVILECTRC       ESIGISRYITQKNRHNTPSRLEL KFCPR YKHTI
Sbjct: 1  MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 60

[Close]
BLAST of ClCG02G007770 vs. ExPASy TrEMBL
Match: X2EY68 (50S ribosomal protein L33, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rpl33 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-22
Identity = 57/66 (86.36%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1  MAKGKDARVTVILECTRC-------ESIGISRYITQKNRHNTPSRLELGKFCPRYYKHTI 60
          MAKGKDARVTVILECTRC       ESIGISRYITQKNRHNTPSRLEL KFCPR YKHTI
Sbjct: 1  MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 60

[Close]
BLAST of ClCG02G007770 vs. ExPASy TrEMBL
Match: A0A286NFR9 (50S ribosomal protein L33, chloroplastic OS=Cucumis melo var. flexuosus OX=1120798 GN=rpl33 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-22
Identity = 57/66 (86.36%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1  MAKGKDARVTVILECTRC-------ESIGISRYITQKNRHNTPSRLELGKFCPRYYKHTI 60
          MAKGKDARVTVILECTRC       ESIGISRYITQKNRHNTPSRLEL KFCPR YKHTI
Sbjct: 1  MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 60

[Close]
BLAST of ClCG02G007770 vs. TAIR 10
Match: ATCG00640.1 (ribosomal protein L33 )

HSP 1 Score: 104.4 bits (259), Expect = 3.2e-23
Identity = 51/66 (77.27%), Postives = 53/66 (80.30%), Query Frame = 0 

Query: 1  MAKGKDARVTVILECTRC-------ESIGISRYITQKNRHNTPSRLELGKFCPRYYKHTI 60
          MAKGKD RVT+ILECT C       E+ GISRYITQKNRHNTPSRLEL KFCP  YKHTI
Sbjct: 1  MAKGKDVRVTIILECTSCVRNDIKKEAAGISRYITQKNRHNTPSRLELRKFCPYCYKHTI 60

The following BLAST results are available for this feature:
BLAST of ClCG02G007770 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_004841804.13.4e-2286.36ribosomal protein L33 [Cucumis melo subsp. melo] >YP_009236301.1 ribosomal prote... [more]
YP_009430648.13.4e-2286.36ribosomal protein L33 [Gynostemma cardiospermum] >YP_009439825.1 ribosomal prote... [more]
QJF46404.13.4e-2286.36ribosomal protein L33 [Cucumis melo][more]
ALO22192.14.4e-2284.85ribosomal protein L33 [Cucurbita foetidissima] >ALO22902.1 ribosomal protein L33... [more]
YP_009447471.14.4e-2284.85ribosomal protein L33 [Cucurbita maxima] >YP_009447556.1 ribosomal protein L33 [... [more]
BLAST of ClCG02G007770 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q2QD689.8e-2584.8550S ribosomal protein L33, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl33 PE=... [more]
B1A9567.1e-2380.3050S ribosomal protein L33, chloroplastic OS=Carica papaya OX=3649 GN=rpl33 PE=3 ... [more]
Q09WZ61.6e-2278.7950S ribosomal protein L33, chloroplastic OS=Morus indica OX=248361 GN=rpl33 PE=3... [more]
A4QKL32.1e-2278.7950S ribosomal protein L33, chloroplastic OS=Capsella bursa-pastoris OX=3719 GN=r... [more]
A4QKV22.1e-2278.7950S ribosomal protein L33, chloroplastic OS=Crucihimalaya wallichii OX=78192 GN=... [more]
BLAST of ClCG02G007770 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
G3ETR81.6e-2286.3650S ribosomal protein L33, chloroplastic OS=Cucumis melo subsp. melo OX=412675 G... [more]
A0A249RZI51.6e-2286.3650S ribosomal protein L33, chloroplastic OS=Cucumis melo var. cantalupensis OX=3... [more]
A0A109WXY71.6e-2286.3650S ribosomal protein L33, chloroplastic OS=Gynostemma pentaphyllum OX=182084 GN... [more]
X2EY681.6e-2286.3650S ribosomal protein L33, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rpl33... [more]
A0A286NFR91.6e-2286.3650S ribosomal protein L33, chloroplastic OS=Cucumis melo var. flexuosus OX=11207... [more]
BLAST of ClCG02G007770 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00640.13.2e-2377.27ribosomal protein L33 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038584Ribosomal protein L33 superfamilyGENE3D2.20.28.120Ribosomal protein L33coord: 1..58
e-value: 6.7E-26
score: 92.2
IPR001705Ribosomal protein L33TIGRFAMTIGR01023TIGR01023coord: 1..58
e-value: 1.6E-19
score: 68.0
IPR001705Ribosomal protein L33PFAMPF00471Ribosomal_L33coord: 9..58
e-value: 9.3E-21
score: 74.0
IPR001705Ribosomal protein L33HAMAPMF_00294Ribosomal_L33coord: 7..58
score: 16.749584
NoneNo IPR availablePANTHERPTHR4316850S RIBOSOMAL PROTEIN L33, CHLOROPLASTICcoord: 1..58
IPR018264Ribosomal protein L33, conserved sitePROSITEPS00582RIBOSOMAL_L33coord: 26..45
IPR011332Zinc-binding ribosomal proteinSUPERFAMILY57829Zn-binding ribosomal proteinscoord: 3..58

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G007770.1ClCG02G007770.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome