ClCG02G007600 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG02G007600
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr02: 8957581 .. 8957820 (-)
RNA-Seq ExpressionClCG02G007600
SyntenyClCG02G007600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCAAGATCAGAAGCTTTTGCTTAGCTTTTATTATGATTCTAATGACTATCCCAAACTTTGCCAATTTTGCCGATTGTCGACTGCTCCGATCGGAGGCCGAGAGCAACGGGGTTAAGGAACATGATGTTCACGAAAAGTCAAAAACCCTAACACCGCACCTGAAAGGTTCCAGCAGTAGAGTCGACCGAGTCTTCACGTTGGCTTCGGGACCGAGCAGGAAGGGCGCCGGCCATTAG

mRNA sequence

ATGTTCAAGATCAGAAGCTTTTGCTTAGCTTTTATTATGATTCTAATGACTATCCCAAACTTTGCCAATTTTGCCGATTGTCGACTGCTCCGATCGGAGGCCGAGAGCAACGGGGTTAAGGAACATGATGTTCACGAAAAGTCAAAAACCCTAACACCGCACCTGAAAGGTTCCAGCAGTAGAGTCGACCGAGTCTTCACGTTGGCTTCGGGACCGAGCAGGAAGGGCGCCGGCCATTAG

Coding sequence (CDS)

ATGTTCAAGATCAGAAGCTTTTGCTTAGCTTTTATTATGATTCTAATGACTATCCCAAACTTTGCCAATTTTGCCGATTGTCGACTGCTCCGATCGGAGGCCGAGAGCAACGGGGTTAAGGAACATGATGTTCACGAAAAGTCAAAAACCCTAACACCGCACCTGAAAGGTTCCAGCAGTAGAGTCGACCGAGTCTTCACGTTGGCTTCGGGACCGAGCAGGAAGGGCGCCGGCCATTAG

Protein sequence

MFKIRSFCLAFIMILMTIPNFANFADCRLLRSEAESNGVKEHDVHEKSKTLTPHLKGSSSRVDRVFTLASGPSRKGAGH
Homology
BLAST of ClCG02G007600 vs. NCBI nr
Match: KAE8652345.1 (hypothetical protein Csa_022541, partial [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 8.0e-19
Identity = 58/80 (72.50%), Postives = 62/80 (77.50%), Query Frame = 0

Query: 1   MFKIRSFCLAFIMILMTIPNFANFADCRLLRSEAESNGVKEHDV-HEKSKTLTPHLKGSS 60
           MFK+RSF +A IMILM IPNFA FA+ R+LRSEAE   VKEHDV  EK K LTP  K SS
Sbjct: 21  MFKLRSFGIALIMILMAIPNFAIFANSRMLRSEAERGSVKEHDVDQEKPKRLTPQPKDSS 80

Query: 61  SRVDRVFTLASGPSRKGAGH 80
           S  DRVFTLASGPSRKG GH
Sbjct: 81  SSGDRVFTLASGPSRKGGGH 100

BLAST of ClCG02G007600 vs. NCBI nr
Match: KAA0043050.1 (uncharacterized protein E6C27_scaffold75G001340 [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 1.8e-18
Identity = 55/79 (69.62%), Postives = 61/79 (77.22%), Query Frame = 0

Query: 1  MFKIRSFCLAFIMILMTIPNFANFADCRLLRSEAESNGVKEHDVHEKSKTLTPHLKGSSS 60
          MFK+RS  +A IMILM IPNFA FA+ R+LRSEAE +GVKEHDV EK K L P  K SSS
Sbjct: 1  MFKVRSLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVDEKPKRLIPQPKDSSS 60

Query: 61 RVDRVFTLASGPSRKGAGH 80
            +RV TLASGPSRKG GH
Sbjct: 61 SGNRVVTLASGPSRKGGGH 79

BLAST of ClCG02G007600 vs. NCBI nr
Match: TYK01636.1 (uncharacterized protein E5676_scaffold38G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-17
Identity = 54/79 (68.35%), Postives = 60/79 (75.95%), Query Frame = 0

Query: 1  MFKIRSFCLAFIMILMTIPNFANFADCRLLRSEAESNGVKEHDVHEKSKTLTPHLKGSSS 60
          MFK+ S  +A IMILM IPNFA FA+ R+LRSEAE +GVKEHDV EK K L P  K SSS
Sbjct: 1  MFKVGSLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVDEKPKRLIPQPKDSSS 60

Query: 61 RVDRVFTLASGPSRKGAGH 80
            +RV TLASGPSRKG GH
Sbjct: 61 SGNRVVTLASGPSRKGGGH 79

BLAST of ClCG02G007600 vs. ExPASy TrEMBL
Match: A0A5A7TI98 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G001340 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 8.6e-19
Identity = 55/79 (69.62%), Postives = 61/79 (77.22%), Query Frame = 0

Query: 1  MFKIRSFCLAFIMILMTIPNFANFADCRLLRSEAESNGVKEHDVHEKSKTLTPHLKGSSS 60
          MFK+RS  +A IMILM IPNFA FA+ R+LRSEAE +GVKEHDV EK K L P  K SSS
Sbjct: 1  MFKVRSLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVDEKPKRLIPQPKDSSS 60

Query: 61 RVDRVFTLASGPSRKGAGH 80
            +RV TLASGPSRKG GH
Sbjct: 61 SGNRVVTLASGPSRKGGGH 79

BLAST of ClCG02G007600 vs. ExPASy TrEMBL
Match: A0A5D3BTU1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38G00040 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.6e-18
Identity = 54/79 (68.35%), Postives = 60/79 (75.95%), Query Frame = 0

Query: 1  MFKIRSFCLAFIMILMTIPNFANFADCRLLRSEAESNGVKEHDVHEKSKTLTPHLKGSSS 60
          MFK+ S  +A IMILM IPNFA FA+ R+LRSEAE +GVKEHDV EK K L P  K SSS
Sbjct: 1  MFKVGSLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVDEKPKRLIPQPKDSSS 60

Query: 61 RVDRVFTLASGPSRKGAGH 80
            +RV TLASGPSRKG GH
Sbjct: 61 SGNRVVTLASGPSRKGGGH 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8652345.18.0e-1972.50hypothetical protein Csa_022541, partial [Cucumis sativus][more]
KAA0043050.11.8e-1869.62uncharacterized protein E6C27_scaffold75G001340 [Cucumis melo var. makuwa][more]
TYK01636.11.2e-1768.35uncharacterized protein E5676_scaffold38G00040 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TI988.6e-1969.62Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BTU15.6e-1868.35Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..60

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G007600.1ClCG02G007600.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane