ClCG02G007567 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G007567
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Photosystem I assembly protein Ycf3
Location	CG_Chr02: 8941894 .. 8942294 (-)
RNA-Seq Expression	ClCG02G007567
Synteny	ClCG02G007567

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGCTCAATCCGAAGGAAATTATGCGGAAGCTTTACAGAATTATTATGAAGCTATGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAAGTCTTATCCACACAAGGAACGGAGAACATACGAAAGCAGTAGTATATTGTTCCATGGAGCTAAGGTCCAAAATATGGAAGAAACTGGTGTTTTCACGACTCTATCACCCAGTCAATTCTGTTCCACTTAATCCCTATTTCATGGCCCTGAGGGTTTTCTTATTGATGATAGTGACGATATTGATGATAGTGGCGATATTGATGATAGTGACGATATCGACCGTGACCTTGATACGGAGCTGGAGCTTCTAACTATGATGAATGCGCATGGGAATCACTTGGGGTCTGAATAA

mRNA sequence

ATGTCGGCTCAATCCGAAGGAAATTATGCGGAAGCTTTACAGAATTATTATGAAGCTATGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAAGTCTTATCCACACAAGGAACGGAGAACATACGAAAGCAGTAGTATATTGTTCCATGGAGCTAAGTGACGATATTGATGATAGTGGCGATATTGATGATAGTGACGATATCGACCGTGACCTTGATACGGAGCTGGAGCTTCTAACTATGATGAATGCGCATGGGAATCACTTGGGGTCTGAATAA

Coding sequence (CDS)

ATGTCGGCTCAATCCGAAGGAAATTATGCGGAAGCTTTACAGAATTATTATGAAGCTATGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAAGTCTTATCCACACAAGGAACGGAGAACATACGAAAGCAGTAGTATATTGTTCCATGGAGCTAAGTGACGATATTGATGATAGTGGCGATATTGATGATAGTGACGATATCGACCGTGACCTTGATACGGAGCTGGAGCTTCTAACTATGATGAATGCGCATGGGAATCACTTGGGGTCTGAATAA

Protein sequence

MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVYCSMELSDDIDDSGDIDDSDDIDRDLDTELELLTMMNAHGNHLGSE

Homology

[Close]

BLAST of ClCG02G007567 vs. NCBI nr
Match: QFQ38562.1 (hypothetical chloroplast RF34 [Sonerila plagiocardia] >QFQ45869.1 hypothetical chloroplast RF34 [Sonerila plagiocardia])

HSP 1 Score: 105.1 bits (261), Expect = 3.4e-19
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVYCSMEL 58
          MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHTRNGEHTKA+ Y S  L
Sbjct: 43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYSRAL 99

[Close]

BLAST of ClCG02G007567 vs. NCBI nr
Match: QFQ40913.1 (hypothetical chloroplast RF34 [Phyllagathis tetrandra])

HSP 1 Score: 105.1 bits (261), Expect = 3.4e-19
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVYCSMEL 58
          MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHTRNGEHTKA+ Y S  L
Sbjct: 43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYSRAL 99

[Close]

BLAST of ClCG02G007567 vs. NCBI nr
Match: QFQ38394.1 (hypothetical chloroplast RF34 [Phyllagathis nudipes])

HSP 1 Score: 105.1 bits (261), Expect = 3.4e-19
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVYCSMEL 58
          MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHTRNGEHTKA+ Y S  L
Sbjct: 43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYSRAL 99

[Close]

BLAST of ClCG02G007567 vs. NCBI nr
Match: CUR04437.1 (ycf3 [Acacia longispinea])

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-18
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY 53
          MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHTRNGEHTKA+ Y
Sbjct: 43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEY 94

[Close]

BLAST of ClCG02G007567 vs. NCBI nr
Match: YP_009745496.1 (photosystem I assembly protein Ycf3 [Tribulus terrestris] >QIH29935.1 photosystem I assembly protein Ycf3 [Tribulus terrestris])

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-18
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY 53
          MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHTRNGEHTKA+ Y
Sbjct: 43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEY 94

[Close]

BLAST of ClCG02G007567 vs. ExPASy Swiss-Prot
Match: Q4VZH4 (Photosystem I assembly protein Ycf3 OS=Cucumis sativus OX=3659 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-21
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY 53
          MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHTRNGEHTKA+ Y
Sbjct: 44 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEY 95

[Close]

BLAST of ClCG02G007567 vs. ExPASy Swiss-Prot
Match: Q09X16 (Photosystem I assembly protein Ycf3 OS=Morus indica OX=248361 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-21
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY 53
          MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHTRNGEHTKA+ Y
Sbjct: 43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEY 94

[Close]

BLAST of ClCG02G007567 vs. ExPASy Swiss-Prot
Match: P61843 (Photosystem I assembly protein Ycf3 OS=Arabidopsis thaliana OX=3702 GN=ycf3 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.3e-21
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY 53
          MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHT NGEHTKA+ Y
Sbjct: 43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94

[Close]

BLAST of ClCG02G007567 vs. ExPASy Swiss-Prot
Match: Q8S8X3 (Photosystem I assembly protein Ycf3 OS=Atropa belladonna OX=33113 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.3e-21
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY 53
          MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHT NGEHTKA+ Y
Sbjct: 43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94

[Close]

BLAST of ClCG02G007567 vs. ExPASy Swiss-Prot
Match: Q53CF3 (Photosystem I assembly protein Ycf3 OS=Brassica juncea OX=3707 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.3e-21
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY 53
          MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHT NGEHTKA+ Y
Sbjct: 43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94

[Close]

BLAST of ClCG02G007567 vs. ExPASy TrEMBL
Match: A0A5P8GT88 (Photosystem I assembly protein Ycf3 OS=Sonerila plagiocardia OX=2136678 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-19
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVYCSMEL 58
          MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHTRNGEHTKA+ Y S  L
Sbjct: 43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYSRAL 99

[Close]

BLAST of ClCG02G007567 vs. ExPASy TrEMBL
Match: A0A5P8GE29 (Photosystem I assembly protein Ycf3 OS=Phyllagathis tetrandra OX=2136462 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-19
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVYCSMEL 58
          MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHTRNGEHTKA+ Y S  L
Sbjct: 43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYSRAL 99

[Close]

BLAST of ClCG02G007567 vs. ExPASy TrEMBL
Match: A0A5P8G6H0 (Photosystem I assembly protein Ycf3 OS=Phyllagathis nudipes OX=1843296 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-19
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVYCSMEL 58
          MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHTRNGEHTKA+ Y S  L
Sbjct: 43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYSRAL 99

[Close]

BLAST of ClCG02G007567 vs. ExPASy TrEMBL
Match: A0A6B9TUJ8 (Photosystem I assembly protein Ycf3 OS=Gonostegia hirta OX=648870 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.2e-19
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY 53
          MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHTRNGEHTKA+ Y
Sbjct: 43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEY 94

[Close]

BLAST of ClCG02G007567 vs. ExPASy TrEMBL
Match: A0A218KG30 (Photosystem I assembly protein Ycf3 OS=Cucumis sativus var. hardwickii OX=319220 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.2e-19
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY 53
          MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHTRNGEHTKA+ Y
Sbjct: 44 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEY 95

[Close]

BLAST of ClCG02G007567 vs. TAIR 10
Match: ATCG00360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 100.9 bits (250), Expect = 5.9e-22
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY 53
          MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHT NGEHTKA+ Y
Sbjct: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 52

[Close]

BLAST of ClCG02G007567 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 48.9 bits (115), Expect = 2.7e-06
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 60   DIDDSGDIDDSDDIDRDLDTELELLTMMNA 90
            DIDDS DID S+DIDR+LDTELELLTMMNA
Sbjct: 1691 DIDDSDDIDASNDIDRELDTELELLTMMNA 1720

[Close]

BLAST of ClCG02G007567 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 48.9 bits (115), Expect = 2.7e-06
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 60   DIDDSGDIDDSDDIDRDLDTELELLTMMNA 90
            DIDDS DID S+DIDR+LDTELELLTMMNA
Sbjct: 1691 DIDDSDDIDASNDIDRELDTELELLTMMNA 1720

The following BLAST results are available for this feature:

BLAST of ClCG02G007567 vs. NCBI nr


Match Name	E-value	Identity	Description
QFQ38562.1	3.4e-19	89.47	hypothetical chloroplast RF34 [Sonerila plagiocardia] >QFQ45869.1 hypothetical c...	[more]
QFQ40913.1	3.4e-19	89.47	hypothetical chloroplast RF34 [Phyllagathis tetrandra]	[more]
QFQ38394.1	3.4e-19	89.47	hypothetical chloroplast RF34 [Phyllagathis nudipes]	[more]
CUR04437.1	1.3e-18	94.23	ycf3 [Acacia longispinea]	[more]
YP_009745496.1	1.3e-18	94.23	photosystem I assembly protein Ycf3 [Tribulus terrestris] >QIH29935.1 photosyste...	[more]

BLAST of ClCG02G007567 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZH4	1.7e-21	94.23	Photosystem I assembly protein Ycf3 OS=Cucumis sativus OX=3659 GN=ycf3 PE=3 SV=1	[more]
Q09X16	1.7e-21	94.23	Photosystem I assembly protein Ycf3 OS=Morus indica OX=248361 GN=ycf3 PE=3 SV=1	[more]
P61843	8.3e-21	92.31	Photosystem I assembly protein Ycf3 OS=Arabidopsis thaliana OX=3702 GN=ycf3 PE=1...	[more]
Q8S8X3	8.3e-21	92.31	Photosystem I assembly protein Ycf3 OS=Atropa belladonna OX=33113 GN=ycf3 PE=3 S...	[more]
Q53CF3	8.3e-21	92.31	Photosystem I assembly protein Ycf3 OS=Brassica juncea OX=3707 GN=ycf3 PE=3 SV=1	[more]

BLAST of ClCG02G007567 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5P8GT88	1.6e-19	89.47	Photosystem I assembly protein Ycf3 OS=Sonerila plagiocardia OX=2136678 GN=ycf3 ...	[more]
A0A5P8GE29	1.6e-19	89.47	Photosystem I assembly protein Ycf3 OS=Phyllagathis tetrandra OX=2136462 GN=ycf3...	[more]
A0A5P8G6H0	1.6e-19	89.47	Photosystem I assembly protein Ycf3 OS=Phyllagathis nudipes OX=1843296 GN=ycf3 P...	[more]
A0A6B9TUJ8	6.2e-19	94.23	Photosystem I assembly protein Ycf3 OS=Gonostegia hirta OX=648870 GN=ycf3 PE=3 S...	[more]
A0A218KG30	6.2e-19	94.23	Photosystem I assembly protein Ycf3 OS=Cucumis sativus var. hardwickii OX=319220...	[more]

BLAST of ClCG02G007567 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00360.1	5.9e-22	92.31	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
ATCG00860.1	2.7e-06	86.67	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	2.7e-06	86.67	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..88 e-value: 1.6E-7 score: 33.3
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 4..59
None	No IPR available	PANTHER	PTHR26312:SF158	PHOTOSYSTEM I ASSEMBLY PROTEIN YCF3	coord: 2..52
None	No IPR available	PANTHER	PTHR26312	TETRATRICOPEPTIDE REPEAT PROTEIN 5	coord: 2..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G007567.1	ClCG02G007567.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0005515	protein binding