ClCG02G007280 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG02G007280
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionbasic form of pathogenesis-related protein 1-like
LocationCG_Chr02: 8446419 .. 8449593 (-)
RNA-Seq ExpressionClCG02G007280
SyntenyClCG02G007280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATTTGCCAACATTCTCTCTGCCATTTTCTTGATGGCGCTAACCCTAACTCTAGCTTCCATTGTGCCCATCTTGGCCAATAGCTACCCAAAAACTACATTGCTGCCCACAACGCCATCCGTGCGAAGGTTGGCGTCGAGCCCCTCCATTGGAATACAACTTTGGCTACATATGCTCAGAATTACGCCAACACAAAGATCACTACTTGTCAAATGGAGCACTCTGGAGGACCTTATGGTGAGAACCTAGCGGAGGGATACGAAATGATGACAGCAGAGACAGCAGTGAGTCTCTGGGCTGACGAGAAGAAACATTACAACTACAATTCTAATACGTGTGTCAATGACTAGCCATTGCCTCCATTATACACAGTTGGTGTGGAGGAACACCAAATCTGTTGGTTGTGCCCAAGTGAAGTGCCAAAACAATTGGATTTTTCTTATATGCAACTATTATCCTCCTGGCAACTTTATAGGCCAACGTCCATACTAAAATTTTAGAAAGATTATTATTAACCATGATAATTTGCTTGCCTAATCGAGAAGAAAAAAAATTCATGAGAGATTTTTTTTATTATTTTATTAATTCTATACTGATTATCTTTTAATTTGGAAGGATTATTTCCAAGATGCCAGCTTTCTTCCTACTTTGATGCATTCGCACTCGACCAAATGAATACTATTTGAATCATAACAATAATTTCAATTATCCAAGAAGGAGTCTTGGAGAGTGAAGTAGGGACTTCGAACCATTATAAAAGTTATTAATTTCATCTCCTTCTCTCTACTCTTTTAAACAAATGAAAATAATCACAAATTTGCATCCTTTTTGTTCTGGTGGGCATACCACACAAGAAACCAAATATATTTACTTAGTTCATCATCTTGTAACTCCACAGGGATAATAAAAATCTACCCTCCCCTTGAAGGTTTTACTCAAGGTGTCATTGGCTTCAATAACTAATGACTTCTAGAAGTTGCTCATCAGATTTTTTTTCCCTTGGCTTTTTTCTTGTTTTTTTGTTTCAATAATCCAACCATTTTAATCTCATACTTAAGTATCTACTTTGTTGTGATAGAACTCTTTTTTTCTTCTTCTCAGTGCCACCAATTTCATGATCTAAGGCGAAACATTAAATAATTGTTGGGATTTGTGCCCTAAAGACTTTTAATTAATTAGTTGATTAATTTAATTATTAAATATGCAATATTAAATTATCTATTACTAGTAAAAAACCCAAGGTTATTATATGTAATCTTGATCAGTATGTAGTTGACATACAGGTGGATCATGTTCAAGACATTATTTAAGGGGGGTTTAGCGCGCAGTTCTGGAATCGTAAGCTTGAGAATGTTAAGTATGGGGTTAGGCTAGGGGGTTTAAGTAGCCTAGGTTTAAGAAAATTGTTTTTGGAGTCCAAGTTTTGGATGTCTAAGTTTAAGAAGCCTATGTTTGGAGTGCAAACTTAGGAAACCTAGGAATGAAGTGCATGTATAAATCTTGAGTTCGTAAAATATTTTCTTGTATTTAAATAGTGGTTAAATTTTAAATTAGTTTAGATTTGTCATCTCAATTATTTTAATATACTCAAGTTTAAAATAAACTAACAAATTTAGAATAATATATATTTTTTAAAATTTTGAAATTGATGTTTTGACTAAAATTATAATTTTATTTAATTTATTATTTTAATATTTTGATATTTTAATTTTACTATAAAATTTCATAGTCTTTTGTCACTTTAACTAATTTGAAAATGATCGATTTTTTACCAAAATATACTAACTTAAAATTGAAATAAACTAGTATTTTAATATTAGATTCAATTATTGAAAAACTATAATTTTTTTTTTTTATGAAAGTACATTTGAAGAATAAAAAATCATAAAGTTTGAGTTTTAATTTTTATTTGGCTGATAAGTTGTTTCCAACATTTTAAACCTTTACGTTTTAAGTAATGATTCTAAGTCTTAGAGACAACAGAAAAAAATGAAAATGTGATTAGAGTAAATTTAAACTTTCTACACATATAGCCTAGATAAATATACCTAATATACAATTGCAACCTTATAGCTTATCTGGAATGACTTAGGAAAAAAATGTTTTTCACATATTTATTTTTATTTAAACACTTTTAATAAAAACTCCTTAAAATAAAAGCATGTGTTTGGCAATTATTTTTTAAAATTGTTTTTCTATACAAGTTTGTTTAGTTTGTTATATACTAATAGTGTTCTTATTAATGTTTTTCAAGGTTGGCTGGTGGAGTAGGTGGCGGAAGTTTTCCAGTGGGAGGAAGGGGGAGGGGTTGCCAAAGGTTGGCCGACGGCAATCATCGAAGGTGGTGGCTAAAGGTTGGTTGGCCCTGGAGGTGGTGGCCAGAGTGGGCCAATAGGATTGACGAAAGTTCGCCAATGGGGGGAAGGGGGAGGGGTCGCCGGAGGTTGGTCAGCGGCAATCATCGGAGATGGCAGTTGGAGGTTGGTCGACCTTGAAGGTGGTGGCTGAAGTTGGCCAATGGGGTCGTCAAAAGTTCGCCAACGGGGGGAAGGGGGGAGAGGTCGCCAGAGGTGGACCGGCGACAATCACTTCAGGTGGCAGTTGTAGGTTGGTTAGCTAGTAGTAGCCGCCGGAGGTGGCGGCCGCAATTGATCGACAGTGGTCCGCGGAAGTGTTGGCCAGAGTTGGCCACCAAAGGTCGTCAGAGGTGACGGCTAGAGGTTGGTTGGCCAACAGTGGCCAAATGTTAAGTTTACTAGCAGATAAATATGTATACATATTCTCATCAACCGGACTGTTTCCACTATCTTTGGAGAGTTTTGCATGCATGAAGGTTGGAGTGCATTTAATGCTGGCCTTTTCAAACCCAAACTTTTTGATAATGTTCTCGATGTATTTGGACTGAGAGATGAAGAATCCTCATTTAATTGTTTGATCTCAAACCCCAGAAAGTAGGACATATCTTCTACCATGCTCATCTCGAATTCATCTTGCATTTGTTTCACAAAGAATTCTACCATCTCTTAAGACATCCTGTTCTAGGCTTGTCGGGACCTAGAACAAATAATATTTCTTAAACCGCTCTTAAGAGCATGCAGCTAGTGGGAACAAGTCATCTTTGCAGGGAACTAAGGACATTCCTAGCCTTAACTTGTATTCGAATGGTCACTGA

mRNA sequence

ATGGCATTTGCCAACATTCTCTCTGCCATTTTCTTGATGGCGCTAACCCTAACTCTAGCTTCCATTGTGCCCATCTTGGCCAATAGCTACCCAAAAACTACATTGCTGCCCACAACGCCATCCAATTACGCCAACACAAAGATCACTACTTGTCAAATGGAGCACTCTGGAGGACCTTATGGTGAGAACCTAGCGGAGGGATACGAAATGATGACAGCAGAGACAGCACCATTGCCTCCATTATACACAGTTGGTGTGGAGGAACACCAAATCTGTTGGTTGTGCCCAAGTGAATTCTGGAATCGTAAGCTTGAGAATGTTAAGTATGGGGTTAGGCTAGGGGGTTTAAGTAGCCTAGGTTTAAGAAAATTGTTTTTGGAGTCCAAGTTTTGGATGTCTAAGTTTAAGAAGCCTATGTTTGGAGTTGGCTGGTGGAGTAGGTGGCGGAAGTTTTCCAGTGGGAGGAAGGGGGAGGGGTTGCCAAAGGTTGGCCGACGGCAATCATCGAAGGTGGTGGCTAAAGGTTGGTTGGCCCTGGAGGTGGTGGCCAGAGGGGAGGGGTCGCCGGAGGTTGGTCAGCGGCAATCATCGGAGATGGCAGTTGGAGGTTGGTCGACCTTGAAGGTGGTGGCTGAAGTTGGCCAATGGGGTCGTCAAAAGTCGCCAGAGGTGGACCGGCGACAATCACTTCAGGTGGCAGTTGTAGGTTGGTTAGCTAGTAGTAGCCGCCGGAGGTGGCGGCCGCAATTGATCGACAGTGGTCCGCGGAAGTGTTGGCCAGAGTTGGCCACCAAAGGTCGTCAGAGTGCATTTAATGCTGGCCTTTTCAAACCCAAACTTTTTGATAATGTTCTCGATGTATTTGGACTGAGAGATGAAGAATCCTCATTTAATTGTTTGATCTCAAACCCCAGAAATGGGAACAAGTCATCTTTGCAGGGAACTAAGGACATTCCTAGCCTTAACTTGTATTCGAATGGTCACTGA

Coding sequence (CDS)

ATGGCATTTGCCAACATTCTCTCTGCCATTTTCTTGATGGCGCTAACCCTAACTCTAGCTTCCATTGTGCCCATCTTGGCCAATAGCTACCCAAAAACTACATTGCTGCCCACAACGCCATCCAATTACGCCAACACAAAGATCACTACTTGTCAAATGGAGCACTCTGGAGGACCTTATGGTGAGAACCTAGCGGAGGGATACGAAATGATGACAGCAGAGACAGCACCATTGCCTCCATTATACACAGTTGGTGTGGAGGAACACCAAATCTGTTGGTTGTGCCCAAGTGAATTCTGGAATCGTAAGCTTGAGAATGTTAAGTATGGGGTTAGGCTAGGGGGTTTAAGTAGCCTAGGTTTAAGAAAATTGTTTTTGGAGTCCAAGTTTTGGATGTCTAAGTTTAAGAAGCCTATGTTTGGAGTTGGCTGGTGGAGTAGGTGGCGGAAGTTTTCCAGTGGGAGGAAGGGGGAGGGGTTGCCAAAGGTTGGCCGACGGCAATCATCGAAGGTGGTGGCTAAAGGTTGGTTGGCCCTGGAGGTGGTGGCCAGAGGGGAGGGGTCGCCGGAGGTTGGTCAGCGGCAATCATCGGAGATGGCAGTTGGAGGTTGGTCGACCTTGAAGGTGGTGGCTGAAGTTGGCCAATGGGGTCGTCAAAAGTCGCCAGAGGTGGACCGGCGACAATCACTTCAGGTGGCAGTTGTAGGTTGGTTAGCTAGTAGTAGCCGCCGGAGGTGGCGGCCGCAATTGATCGACAGTGGTCCGCGGAAGTGTTGGCCAGAGTTGGCCACCAAAGGTCGTCAGAGTGCATTTAATGCTGGCCTTTTCAAACCCAAACTTTTTGATAATGTTCTCGATGTATTTGGACTGAGAGATGAAGAATCCTCATTTAATTGTTTGATCTCAAACCCCAGAAATGGGAACAAGTCATCTTTGCAGGGAACTAAGGACATTCCTAGCCTTAACTTGTATTCGAATGGTCACTGA

Protein sequence

MAFANILSAIFLMALTLTLASIVPILANSYPKTTLLPTTPSNYANTKITTCQMEHSGGPYGENLAEGYEMMTAETAPLPPLYTVGVEEHQICWLCPSEFWNRKLENVKYGVRLGGLSSLGLRKLFLESKFWMSKFKKPMFGVGWWSRWRKFSSGRKGEGLPKVGRRQSSKVVAKGWLALEVVARGEGSPEVGQRQSSEMAVGGWSTLKVVAEVGQWGRQKSPEVDRRQSLQVAVVGWLASSSRRRWRPQLIDSGPRKCWPELATKGRQSAFNAGLFKPKLFDNVLDVFGLRDEESSFNCLISNPRNGNKSSLQGTKDIPSLNLYSNGH
Homology
BLAST of ClCG02G007280 vs. NCBI nr
Match: XP_038888921.1 (basic form of pathogenesis-related protein 1-like [Benincasa hispida])

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-15
Identity = 56/96 (58.33%), Postives = 62/96 (64.58%), Query Frame = 0

Query: 1  MAFANILSAIFLMALTLTLASIVPILANSYPKTTL--------------------LPTTP 60
          MAFAN+LS++ L+ALTL LA I PI A SYPK  +                    L    
Sbjct: 1  MAFANVLSSLCLLALTLVLAPISPIEAKSYPKNYIAAHNAIRAEVGIEPLHWNATLAAYA 60

Query: 61 SNYANTKITTCQMEHSGGPYGENLAEGYEMMTAETA 77
           NYANTKI TCQMEHSGGPYGENLAEGYE+MTAETA
Sbjct: 61 QNYANTKIATCQMEHSGGPYGENLAEGYEVMTAETA 96

BLAST of ClCG02G007280 vs. NCBI nr
Match: XP_008455069.1 (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo] >KAA0031391.1 basic form of pathogenesis-related protein 1-like [Cucumis melo var. makuwa] >TYK06842.1 basic form of pathogenesis-related protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 7.6e-15
Identity = 56/96 (58.33%), Postives = 58/96 (60.42%), Query Frame = 0

Query: 1  MAFANILSAIFLMALTLTLASIVPILANSYPK--------------------TTLLPTTP 60
          M FANILS   L+ LTLTLAS  PILA SYPK                     + L    
Sbjct: 1  MGFANILSTFCLLGLTLTLASTAPILAKSYPKNYVDAHNAIRAEVGVDPLHWNSTLAAYA 60

Query: 61 SNYANTKITTCQMEHSGGPYGENLAEGYEMMTAETA 77
           NYANTKI TCQMEHSGGPYGENLAEGYE MTAE A
Sbjct: 61 QNYANTKIATCQMEHSGGPYGENLAEGYEEMTAEMA 96

BLAST of ClCG02G007280 vs. NCBI nr
Match: XP_004137080.2 (pathogenesis-related protein 1A [Cucumis sativus] >KGN43826.1 hypothetical protein Csa_017168 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 3.0e-11
Identity = 54/102 (52.94%), Postives = 58/102 (56.86%), Query Frame = 0

Query: 1   MAFANILSAIFL------MALTLTLASIVPILANSYPK--------------------TT 60
           M FANILS + L      + LTLTLAS  P LA S PK                     +
Sbjct: 1   MGFANILSTLCLLGLTLTLTLTLTLASTAPSLAKSSPKNYIDAHNAVRAAVGVEPLHWNS 60

Query: 61  LLPTTPSNYANTKITTCQMEHSGGPYGENLAEGYEMMTAETA 77
            L     NYANTKI TCQMEHSGGPYGENLAEG E+MTAETA
Sbjct: 61  TLADYAQNYANTKIATCQMEHSGGPYGENLAEGNEVMTAETA 102

BLAST of ClCG02G007280 vs. NCBI nr
Match: XP_022988978.1 (basic form of pathogenesis-related protein 1-like [Cucurbita maxima])

HSP 1 Score: 74.7 bits (182), Expect = 1.6e-09
Identity = 47/96 (48.96%), Postives = 54/96 (56.25%), Query Frame = 0

Query: 1  MAFANILSAIFLMALTLTLASIVPILANSYPK--------------------TTLLPTTP 60
          MA  NIL  I L+ + LTL +I P +ANS PK                       L T  
Sbjct: 1  MASPNILKPICLLGIALTLTTITPTMANSTPKDFVDAHNAIRAEVGVEPLKWNETLATYA 60

Query: 61 SNYANTKITTCQMEHSGGPYGENLAEGYEMMTAETA 77
            YA +KITTC+MEHSGGPYGENLA GYE +TAETA
Sbjct: 61 QKYAESKITTCEMEHSGGPYGENLAVGYEGITAETA 96

BLAST of ClCG02G007280 vs. NCBI nr
Match: XP_023531881.1 (basic form of pathogenesis-related protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.8 bits (177), Expect = 6.3e-09
Identity = 46/96 (47.92%), Postives = 53/96 (55.21%), Query Frame = 0

Query: 1  MAFANILSAIFLMALTLTLASIVPILANSYPK--------------------TTLLPTTP 60
          MA  NIL AI L+ + LTL +I P +ANS PK                       L T  
Sbjct: 1  MASPNILKAICLLGIALTLTTITPTMANSSPKDFVDAHNAIRAEVGIEPVQWNETLATYA 60

Query: 61 SNYANTKITTCQMEHSGGPYGENLAEGYEMMTAETA 77
            YA +KI TC+M HSGGPYGENLA GYE +TAETA
Sbjct: 61 QKYAESKIATCEMSHSGGPYGENLAVGYEGITAETA 96

BLAST of ClCG02G007280 vs. ExPASy TrEMBL
Match: A0A5A7SPC2 (Basic form of pathogenesis-related protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001460 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.7e-15
Identity = 56/96 (58.33%), Postives = 58/96 (60.42%), Query Frame = 0

Query: 1  MAFANILSAIFLMALTLTLASIVPILANSYPK--------------------TTLLPTTP 60
          M FANILS   L+ LTLTLAS  PILA SYPK                     + L    
Sbjct: 1  MGFANILSTFCLLGLTLTLASTAPILAKSYPKNYVDAHNAIRAEVGVDPLHWNSTLAAYA 60

Query: 61 SNYANTKITTCQMEHSGGPYGENLAEGYEMMTAETA 77
           NYANTKI TCQMEHSGGPYGENLAEGYE MTAE A
Sbjct: 61 QNYANTKIATCQMEHSGGPYGENLAEGYEEMTAEMA 96

BLAST of ClCG02G007280 vs. ExPASy TrEMBL
Match: A0A1S3C0S3 (basic form of pathogenesis-related protein 1-like OS=Cucumis melo OX=3656 GN=LOC103495334 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.7e-15
Identity = 56/96 (58.33%), Postives = 58/96 (60.42%), Query Frame = 0

Query: 1  MAFANILSAIFLMALTLTLASIVPILANSYPK--------------------TTLLPTTP 60
          M FANILS   L+ LTLTLAS  PILA SYPK                     + L    
Sbjct: 1  MGFANILSTFCLLGLTLTLASTAPILAKSYPKNYVDAHNAIRAEVGVDPLHWNSTLAAYA 60

Query: 61 SNYANTKITTCQMEHSGGPYGENLAEGYEMMTAETA 77
           NYANTKI TCQMEHSGGPYGENLAEGYE MTAE A
Sbjct: 61 QNYANTKIATCQMEHSGGPYGENLAEGYEEMTAEMA 96

BLAST of ClCG02G007280 vs. ExPASy TrEMBL
Match: A0A0A0K7N5 (SCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G070232 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-11
Identity = 54/102 (52.94%), Postives = 58/102 (56.86%), Query Frame = 0

Query: 1   MAFANILSAIFL------MALTLTLASIVPILANSYPK--------------------TT 60
           M FANILS + L      + LTLTLAS  P LA S PK                     +
Sbjct: 1   MGFANILSTLCLLGLTLTLTLTLTLASTAPSLAKSSPKNYIDAHNAVRAAVGVEPLHWNS 60

Query: 61  LLPTTPSNYANTKITTCQMEHSGGPYGENLAEGYEMMTAETA 77
            L     NYANTKI TCQMEHSGGPYGENLAEG E+MTAETA
Sbjct: 61  TLADYAQNYANTKIATCQMEHSGGPYGENLAEGNEVMTAETA 102

BLAST of ClCG02G007280 vs. ExPASy TrEMBL
Match: A0A6J1JNW9 (basic form of pathogenesis-related protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111486179 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.0e-10
Identity = 47/96 (48.96%), Postives = 54/96 (56.25%), Query Frame = 0

Query: 1  MAFANILSAIFLMALTLTLASIVPILANSYPK--------------------TTLLPTTP 60
          MA  NIL  I L+ + LTL +I P +ANS PK                       L T  
Sbjct: 1  MASPNILKPICLLGIALTLTTITPTMANSTPKDFVDAHNAIRAEVGVEPLKWNETLATYA 60

Query: 61 SNYANTKITTCQMEHSGGPYGENLAEGYEMMTAETA 77
            YA +KITTC+MEHSGGPYGENLA GYE +TAETA
Sbjct: 61 QKYAESKITTCEMEHSGGPYGENLAVGYEGITAETA 96

BLAST of ClCG02G007280 vs. ExPASy TrEMBL
Match: A0A6J1EJ50 (basic form of pathogenesis-related protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111434611 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.2e-09
Identity = 45/96 (46.88%), Postives = 54/96 (56.25%), Query Frame = 0

Query: 1  MAFANILSAIFLMALTLTLASIVPILANSYPK--------------------TTLLPTTP 60
          MA  NIL AI L+ + LTL++I P +ANS PK                       + T  
Sbjct: 1  MASPNILKAICLLGIALTLSTITPTMANSSPKDFVDAHNAIRAEVGIEPLKWNETMATYA 60

Query: 61 SNYANTKITTCQMEHSGGPYGENLAEGYEMMTAETA 77
            YA +KI TC+M HSGGPYGENLA GYE +TAETA
Sbjct: 61 QKYAESKIATCEMAHSGGPYGENLAVGYEGITAETA 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038888921.12.0e-1558.33basic form of pathogenesis-related protein 1-like [Benincasa hispida][more]
XP_008455069.17.6e-1558.33PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo] >KAA... [more]
XP_004137080.23.0e-1152.94pathogenesis-related protein 1A [Cucumis sativus] >KGN43826.1 hypothetical prote... [more]
XP_022988978.11.6e-0948.96basic form of pathogenesis-related protein 1-like [Cucurbita maxima][more]
XP_023531881.16.3e-0947.92basic form of pathogenesis-related protein 1-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SPC23.7e-1558.33Basic form of pathogenesis-related protein 1-like OS=Cucumis melo var. makuwa OX... [more]
A0A1S3C0S33.7e-1558.33basic form of pathogenesis-related protein 1-like OS=Cucumis melo OX=3656 GN=LOC... [more]
A0A0A0K7N51.5e-1152.94SCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G070232 PE=4 SV... [more]
A0A6J1JNW98.0e-1048.96basic form of pathogenesis-related protein 1-like OS=Cucurbita maxima OX=3661 GN... [more]
A0A6J1EJ505.2e-0946.88basic form of pathogenesis-related protein 1-like OS=Cucurbita moschata OX=3662 ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G007280.1ClCG02G007280.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005576 extracellular region