ClCG02G007270 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG02G007270
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionbasic form of pathogenesis-related protein 1-like
LocationCG_Chr02: 8444428 .. 8449507 (+)
RNA-Seq ExpressionClCG02G007270
SyntenyClCG02G007270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATTTGCCAACATTCTCTCCGCCCTTTGTTTGATGGGTGTAAAAACAGAAGAAAAATTATACCTACTGTTTACTATTGTAACCAACAAATCCCTTTAACTAATTTCTTCAATTTCCTGCACCTATAAAATAAATTATTAAGTGAGATGAAAGAGGTAGAGTGATTGTAATCTCCAAAAACTATATTGAAACAAATAAAGAAAAATACCCCCTTTTCTGCTCAGTGGATGTAGGCTATAGCCGAACCACTTAAAATTTGTGTGTTCTTTCTTCACTTTATTAATCTCCTCTATCATCTTCTTCTATTTTAAGTGAATCTACAATTTCCCCTTGCATCATTGAACACCTGAGAAAACAAGAGAGGAAATTTAGTGAGTATTTTCTTCTTTGAATGATCAAAACCAGAGAGAAAAGACCTTGAGATTTCTGAGATTTGCATGTGACTGAAGGCTGAGAATAACTCAAGTGGGGTTATCTCATTTCCAAGTTAATACGTGTGTGGTGATTGGAAAAGCAACGTGGAAGAAACTCTTCCACATAACCTTCAACTTTTGGGCCTGTAAATTGAGTTCAAGCTCAAGAAAATGGCTAACCAGAACCCTATCCTACATTGCCCCCATCTTCGCCGAAAGCTACCCAACTACACTGCTGCCCACAATGCAATCCGCGCGAAAGTTAGTGTCCTGTCCCTCCATTAATAACCACTCTGGCTGCTTATGCTCAGAACTATGCCAACACGAAGATCACTACTTGTAAAATGGAGCACTCTAGAGGACCTTATGGCGAGAACCTAACGAAGGGGTACAAAATGATGACAGCAGAGACAACAATGAGTCTCTAAGCCGACGAGAAGAAACAGTACGAATACAATTTTAATACGTATGTCAATGACTCTAGCCATTATCTCCATTATACACAGTTGATATAGAGGAACACCAAATCTGTTTGTTGTGCCCAAGTGAAGTGCCTAAACAATTGAATTTTTCTTATATGCAACTATTATCCTCTTGGCAACTATATGACTATCCAGGAGAAGTTGGAATTGGATCATGTAATATGTGATGTTCTTGGTCATCGTGTTGCTCTGGAATAGCTTTGCCATGTTGTCGCTATCGTCAACAACGAATACGTCTTTGGTCAATGTCACTAACATTGAGTCTCCGTGTATGTTAAATGATATTTTCCACATTTACCATGTTTTGGTCACATATTAATCTCGACTCTAGTAAACTGTGTTGTAATGAATAATGGTGCACATTGTAGACAAAATTATTTTGTATGATGAAAAAAAATATAAGTATAAAATAATATCCATATCATATAATTAAAAAACACTAGATAATAAAATTCTTACCATGTATTAATAGTAAGCACCGTCAGGTGTGATAAATCTTCTCGTGATTGAGTCGTACCAGGACAAGTAACCATCTGGCACAGCTGACCCATGTATTATTTATCCTTGTGCACAATGATCATTACGTGCATGTCATAAGGATATATATTCTGCATGAATTTGATGCTAGTTTTAGTCATATTTACCTCTTAAATCAATTAAAGCATGCTTGTATGTGAATTTTAAATTGTTTAGGACAATTCTTTTGCTACATTGCATGATTGATCATACAAGAATTGGTGTAATTAGTAATTTCGACTATCCAATTGCTAATGAATTTGGCTAGATTACCTTAGCTAAATGCGGTGTTTAATTGATTAGGCCTCTGATGGAATTGACTAATCAGACATTTAGACTAATTAAGTAATTGGTTAGTTCAATAGGACGTTGGTTTTGATCTTAAGTCAAGCTAACAAGTCAAGAATAGAATTGAGCATGCAATTAATGCTTCGAGTTCGATGAACAACCAAGTCAAATGAATGAATTTTGAATCATTAGGCTAGGCTTTTTAATTAAATTAGTTCCATTTTCAATTACACTTTTACATTCATGCTTTTACATTCAATTGCAAACAAATCAACACTGAGACCTCCCCTCAGTGACCATTCGAATACAAGTTAAGGCTAGGAATGTCCTTAGTTCCCTGCAAAGATGACTTGTTCCCACTAGCTGCATGCTCTTAAGAGCGGTTTAAGAAATATTATTTGTTCTAGGTCCCGACAAGCCTAGAACAGGATGTCTTAAGAGATGGTAGAATTCTTTGTGAAACAAATGCAAGATGAATTCGAGATGAGCATGGTAGAAGATATGTCCTACTTTCTGGGGTTTGAGATCAAACAATTAAATGAGGATTCTTCATCTCTCAGTCCAAATACATCGAGAACATTATCAAAAAGTTTGGGTTTGAAAAGGCCAGCATTAAATGCACTCCAACCTTCATGCATGCAAAACTCTCCAAAGATAGTGGAAACAGTCCGGTTGATGAGAATATGTATACATATTTATCTGCTAGTAAACTTAACATTTGGCCACTGTTGGCCAACCAACCTCTAGCCGTCACCTCTGACGACCTTTGGTGGCCAACTCTGGCCAACACTTCCGCGGACCACTGTCGATCAATTGCGGCCGCCACCTCCGGCGGCTACTACTAGCTAACCAACCTACAACTGCCACCTGAAGTGATTGTCGCCGGTCCACCTCTGGCGACCTCTCCCCCCTTCCCCCCGTTGGCGAACTTTTGACGACCCCATTGGCCAACTTCAGCCACCACCTTCAAGGTCGACCAACCTCCAACTGCCATCTCCGATGATTGCCGCTGACCAACCTCCGGCGACCCCTCCCCCTTCCCCCCATTGGCGAACTTTCGTCAATCCTATTGGCCCACTCTGGCCACCACCTCCAGGGCCAACCAACCTTTAGCCACCACCTTCGATGATTGCCGTCGGCCAACCTTTGGCAACCCCTCCCCCTTCCTCCCACTGGAAAACTTCCGCCACCTACTCCACCAGCCAACCTTGAAAAACATTAATAAGAACACTATTAGTATATAACAAACTAAACAAACTTGTATAGAAAAACAATTTTAAAAAATAATTGCCAAACACATGCTTTTATTTTAAGGAGTTTTTATTAAAAGTGTTTAAATAAAAATAAATATGTGAAAAACATTTTTTTCCTAAGTCATTCCAGATAAGCTATAAGGTTGCAATTGTATATTAGGTATATTTATCTAGGCTATATGTGTAGAAAGTTTAAATTTACTCTAATCACATTTTCATTTTTTTCTGTTGTCTCTAAGACTTAGAATCATTACTTAAAACGTAAAGGTTTAAAATGTTGGAAACAACTTATCAGCCAAATAAAAATTAAAACTCAAACTTTATGATTTTTTATTCTTCAAATGTACTTTCATAAAAAAAAAAAATTATAGTTTTTCAATAATTGAATCTAATATTAAAATACTAGTTTATTTCAATTTTAAGTTAGTATATTTTGGTAAAAAATCGATCATTTTCAAATTAGTTAAAGTGACAAAAGACTATGAAATTTTATAGTAAAATTAAAATATCAAAATATTAAAATAATAAATTAAATAAAATTATAATTTTAGTCAAAACATCAATTTCAAAATTTTAAAAAATATATATTATTCTAAATTTGTTAGTTTATTTTAAACTTGAGTATATTAAAATAATTGAGATGACAAATCTAAACTAATTTAAAATTTAACCACTATTTAAATACAAGAAAATATTTTACGAACTCAAGATTTATACATGCACTTCATTCCTAGGTTTCCTAAGTTTGCACTCCAAACATAGGCTTCTTAAACTTAGACATCCAAAACTTGGACTCCAAAAACAATTTTCTTAAACCTAGGCTACTTAAACCCCCTAGCCTAACCCCATACTTAACATTCTCAAGCTTACGATTCCAGAACTGCGCGCTAAACCCCCCTTAAATAATGTCTTGAACATGATCCACCTGTATGTCAACTACATACTGATCAAGATTACATATAATAACCTTGGGTTTTTTACTAGTAATAGATAATTTAATATTGCATATTTAATAATTAAATTAATCAACTAATTAATTAAAAGTCTTTAGGGCACAAATCCCAACAATTATTTAATGTTTCGCCTTAGATCATGAAATTGGTGGCACTGAGAAGAAGAAAAAAAGAGTTCTATCACAACAAAGTAGATACTTAAGTATGAGATTAAAATGGTTGGATTATTGAAACAAAAAAACAAGAAAAAAGCCAAGGGAAAAAAAATCTGATGAGCAACTTCTAGAAGTCATTAGTTATTGAAGCCAATGACACCTTGAGTAAAACCTTCAAGGGGAGGGTAGATTTTTATTATCCCTGTGGAGTTACAAGATGATGAACTAAGTAAATATATTTGGTTTCTTGTGTGGTATGCCCACCAGAACAAAAAGGATGCAAATTTGTGATTATTTTCATTTGTTTAAAAGAGTAGAGAGAAGGAGATGAAATTAATAACTTTTATAATGGTTCGAAGTCCCTACTTCACTCTCCAAGACTCCTTCTTGGATAATTGAAATTATTGTTATGATTCAAATAGTATTCATTTGGTCGAGTGCGAATGCATCAAAGTAGGAAGAAAGCTGGCATCTTGGAAATAATCCTTCCAAATTAAAAGATAATCAGTATAGAATTAATAAAATAATAAAAAAAATCTCTCATGAATTTTTTTTCTTCTCGATTAGGCAAGCAAATTATCATGGTTAATAATAATCTTTCTAAAATTTTAGTATGGACGTTGGCCTATAAAGTTGCCAGGAGGATAATAGTTGCATATAAGAAAAATCCAATTGTTTTGGCACTTCACTTGGGCACAACCAACAGATTTGGTGTTCCTCCACACCAACTGTGTATAATGGAGGCAATGGCTAGTCATTGACACACGTATTAGAATTGTAGTTGTAATGTTTCTTCTCGTCAGCCCAGAGACTCACTGCTGTCTCTGCTGTCATCATTTCGTATCCCTCCGCTAGGTTCTCACCATAAGGTCCTCCAGAGTGCTCCATTTGACAAGTAGTGATCTTTGTGTTGGCGTAATTCTGAGCATATGTAGCCAAAGTTGTATTCCAATGGAGGGGCTCGACGCCAACCTTCGCACGGATGGCGTTGTGGGCAGCAATGTAGTTTTTGGGTAG

mRNA sequence

ATGGCATTTGCCAACATTCTCTCCGCCCTTTGTTTGATGGGTAACTATGCCAACACGAAGATCACTACTTGTAAAATGGAGCACTCTAGAGGACCTTATGGCGAGAACCTAACGAAGGGGTACAAAATGATGACAGCAGAGACAACAATGACCCAGAGACTCACTGCTGTCTCTGCTGTCATCATTTCGTATCCCTCCGCTAGCCAAAGTTGTATTCCAATGGAGGGGCTCGACGCCAACCTTCGCACGGATGGCGTTGTGGGCAGCAATGTAGTTTTTGGGTAG

Coding sequence (CDS)

ATGGCATTTGCCAACATTCTCTCCGCCCTTTGTTTGATGGGTAACTATGCCAACACGAAGATCACTACTTGTAAAATGGAGCACTCTAGAGGACCTTATGGCGAGAACCTAACGAAGGGGTACAAAATGATGACAGCAGAGACAACAATGACCCAGAGACTCACTGCTGTCTCTGCTGTCATCATTTCGTATCCCTCCGCTAGCCAAAGTTGTATTCCAATGGAGGGGCTCGACGCCAACCTTCGCACGGATGGCGTTGTGGGCAGCAATGTAGTTTTTGGGTAG

Protein sequence

MAFANILSALCLMGNYANTKITTCKMEHSRGPYGENLTKGYKMMTAETTMTQRLTAVSAVIISYPSASQSCIPMEGLDANLRTDGVVGSNVVFG
Homology
[Close]
BLAST of ClCG02G007270 vs. NCBI nr
Match: XP_038888921.1 (basic form of pathogenesis-related protein 1-like [Benincasa hispida])

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-06
Identity = 27/37 (72.97%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 15 NYANTKITTCKMEHSRGPYGENLTKGYKMMTAETTMT 52
          NYANTKI TC+MEHS GPYGENL +GY++MTAET ++
Sbjct: 62 NYANTKIATCQMEHSGGPYGENLAEGYEVMTAETAVS 98

[Close]
BLAST of ClCG02G007270 vs. NCBI nr
Match: XP_008455069.1 (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo] >KAA0031391.1 basic form of pathogenesis-related protein 1-like [Cucumis melo var. makuwa] >TYK06842.1 basic form of pathogenesis-related protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-05
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 15 NYANTKITTCKMEHSRGPYGENLTKGYKMMTAETTMT 52
          NYANTKI TC+MEHS GPYGENL +GY+ MTAE  ++
Sbjct: 62 NYANTKIATCQMEHSGGPYGENLAEGYEEMTAEMAVS 98

[Close]
BLAST of ClCG02G007270 vs. NCBI nr
Match: XP_004137080.2 (pathogenesis-related protein 1A [Cucumis sativus] >KGN43826.1 hypothetical protein Csa_017168 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-05
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 15  NYANTKITTCKMEHSRGPYGENLTKGYKMMTAETTMT 52
           NYANTKI TC+MEHS GPYGENL +G ++MTAET ++
Sbjct: 68  NYANTKIATCQMEHSGGPYGENLAEGNEVMTAETAVS 104

[Close]
BLAST of ClCG02G007270 vs. NCBI nr
Match: XP_022988978.1 (basic form of pathogenesis-related protein 1-like [Cucurbita maxima])

HSP 1 Score: 55.1 bits (131), Expect = 3.9e-04
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 16 YANTKITTCKMEHSRGPYGENLTKGYKMMTAETTM 51
          YA +KITTC+MEHS GPYGENL  GY+ +TAET +
Sbjct: 63 YAESKITTCEMEHSGGPYGENLAVGYEGITAETAV 97

[Close]
BLAST of ClCG02G007270 vs. NCBI nr
Match: XP_022972427.1 (basic form of pathogenesis-related protein 1-like [Cucurbita maxima])

HSP 1 Score: 54.7 bits (130), Expect = 5.0e-04
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 0 

Query: 15 NYANTKITTCKMEHSRGPYGENLTKGYKMMTA 47
          NYA +KI TCKMEHS GPYGENL +GY  MTA
Sbjct: 58 NYAYSKIETCKMEHSNGPYGENLAEGYGEMTA 89

[Close]
BLAST of ClCG02G007270 vs. ExPASy TrEMBL
Match: A0A5A7SPC2 (Basic form of pathogenesis-related protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001460 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.8e-06
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 15 NYANTKITTCKMEHSRGPYGENLTKGYKMMTAETTMT 52
          NYANTKI TC+MEHS GPYGENL +GY+ MTAE  ++
Sbjct: 62 NYANTKIATCQMEHSGGPYGENLAEGYEEMTAEMAVS 98

[Close]
BLAST of ClCG02G007270 vs. ExPASy TrEMBL
Match: A0A0A0K7N5 (SCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G070232 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.8e-06
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 15  NYANTKITTCKMEHSRGPYGENLTKGYKMMTAETTMT 52
           NYANTKI TC+MEHS GPYGENL +G ++MTAET ++
Sbjct: 68  NYANTKIATCQMEHSGGPYGENLAEGNEVMTAETAVS 104

[Close]
BLAST of ClCG02G007270 vs. ExPASy TrEMBL
Match: A0A1S3C0S3 (basic form of pathogenesis-related protein 1-like OS=Cucumis melo OX=3656 GN=LOC103495334 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.8e-06
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 15 NYANTKITTCKMEHSRGPYGENLTKGYKMMTAETTMT 52
          NYANTKI TC+MEHS GPYGENL +GY+ MTAE  ++
Sbjct: 62 NYANTKIATCQMEHSGGPYGENLAEGYEEMTAEMAVS 98

[Close]
BLAST of ClCG02G007270 vs. ExPASy TrEMBL
Match: A0A6J1JNW9 (basic form of pathogenesis-related protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111486179 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.9e-04
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 16 YANTKITTCKMEHSRGPYGENLTKGYKMMTAETTM 51
          YA +KITTC+MEHS GPYGENL  GY+ +TAET +
Sbjct: 63 YAESKITTCEMEHSGGPYGENLAVGYEGITAETAV 97

[Close]
BLAST of ClCG02G007270 vs. ExPASy TrEMBL
Match: A0A6J1I4S3 (basic form of pathogenesis-related protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111470990 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.4e-04
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 0 

Query: 15 NYANTKITTCKMEHSRGPYGENLTKGYKMMTA 47
          NYA +KI TCKMEHS GPYGENL +GY  MTA
Sbjct: 58 NYAYSKIETCKMEHSNGPYGENLAEGYGEMTA 89

The following BLAST results are available for this feature:
BLAST of ClCG02G007270 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038888921.11.1e-0672.97basic form of pathogenesis-related protein 1-like [Benincasa hispida][more]
XP_008455069.11.2e-0570.27PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo] >KAA... [more]
XP_004137080.21.2e-0570.27pathogenesis-related protein 1A [Cucumis sativus] >KGN43826.1 hypothetical prote... [more]
XP_022988978.13.9e-0468.57basic form of pathogenesis-related protein 1-like [Cucurbita maxima][more]
XP_022972427.15.0e-0475.00basic form of pathogenesis-related protein 1-like [Cucurbita maxima][more]
BLAST of ClCG02G007270 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG02G007270 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SPC25.8e-0670.27Basic form of pathogenesis-related protein 1-like OS=Cucumis melo var. makuwa OX... [more]
A0A0A0K7N55.8e-0670.27SCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G070232 PE=4 SV... [more]
A0A1S3C0S35.8e-0670.27basic form of pathogenesis-related protein 1-like OS=Cucumis melo OX=3656 GN=LOC... [more]
A0A6J1JNW91.9e-0468.57basic form of pathogenesis-related protein 1-like OS=Cucurbita maxima OX=3661 GN... [more]
A0A6J1I4S32.4e-0475.00basic form of pathogenesis-related protein 1-like OS=Cucurbita maxima OX=3661 GN... [more]
BLAST of ClCG02G007270 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G007270.2ClCG02G007270.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009607 response to biotic stimulus
cellular_component GO:0005615 extracellular space