ClCG02G006510 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG02G006510
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionLINE-1 retrotransposable element ORF2 protein
LocationCG_Chr02: 7483845 .. 7486693 (-)
RNA-Seq ExpressionClCG02G006510
SyntenyClCG02G006510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGCAGATTTCCTTTGAGGATGTTTTTCCTTTTCGGGCATGCGTATTTAATGGCAATATGGAGCTTTGCTAGGGATGTGGAGATTATTGAATGTACTTGAATGTTTTGTTTTTTGGTGAAGCCGAAATTTGGTTCTTTATTATGTTGTGCAAGTTGTTGATAAAACTTTTTTGTGCAAGAAGCAAGTCATAGTCTTAGGGGAGCCTAATATGTCATGACGGGAGAAAGAGCTCTCCAACTTAAGGCGTACTTAAGTTAGATCAGTGAAGGTCATTCATTGAAGGAAAAAAAAAAACTAGGAAGATCACAACAATAGAGAGGAAGTCCCAAACATTGAGGAGAGTTGAAGCGTTCAACACTAATATTAATACACTCTCGCAGATAGGGGAGCTTAGGTGATCTATGAGTTAGACTCAATGGGAGCCACTGTAGTAGTCGCTATATTACAGATAAGTACTACGTTGTAATTGTTTGACTTTTTAATATTAGTGAATTATCTTTCATGGGCATACTGTCTAGGGGTTAGGAGTAAGTGGTTATCATCTAATTGGGTTACTAATTTTTGTGCATTTTTTTTTAATCTCTGTTATAATGCGTGCGTATGCTTTCTGTTTGACATCTGTGTTCTGAGTTATGTGTCATCTATTTGTTCAATTGTATATATAGCAAATTTGTGTTGTTTTGCAGATCCTTTTCTTAAAAAAAAAATTCAACTTTTCTTTTAACAGATCTTTTGTCTTTTGAAATACGAGAAAGAAATAATATTAAAAGTAAATAAATCTTTTAGCATCCTCATCTTCTAAAAATAAAAAGAAAAAAAGAAAAAGCATGGATTGTATTTAATTCAACTTATATGCATGATTGACAATAAGTATACAAATTATATTCTACCAACCAAAATAATCATGAACCAATCAAGTTTAAAAGTCTCTATTTAATATATATTATAAAATAAGTTATTTATGTGGAGATCAATGGCTATGGCGATTGATGAAGATCAACCAAACTAGTATGGAATTTTAATTTTCATTGATTACACACAATACATGTTCAGAAATAAGATTAGATAATATCAAAATAGGAATTAGTATAAAAATATCAAGTAAGGATTTGAGAAGAGACGAAAAACGGAAACATTGGGAGGTCAAAAACAATAAATAAAAATTAATTATCACATGTGTGTTTGGTCCTAAGTTTTCAAAACATACCATTATTTTAGTCTTAAGGTTTCAAAAATAAATTTAAAAGGTCATTACAATGATTTATTATCACCTTCCGCTTTTAAGGTATATCTTACCAAGTCTCCGTATATTTGTCAAATGCCTTAAAAAATAGGAATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATCTTTTCAACATTTAAACCTTTACTTATACAGATTCCTCATATGAAAGAAAACTATAACACAAACTTTAATCAATTTGAGCTTAAAGGAGGGAAAACACTATGAAATTGGTTGCCTCTGGGAGGCAATCCTAAGCAGAGTGGTTTTTGGGATCCCATCATTAAGCGTATAGATAAAAAGCTCTCCTCCTGGCAGCTTTCTTTCATCTCCAAAGGTGGCAGACTTACCCTGATTCAGGCGGTCCTGAGTAGTATACCAACATATTTCATGTCTCTCTTCAAGGCTCCGTTGAAAGGCTGATGAGAAACTTCCTTTGGAAAGACTTTGGAAATCAAAATGGCTCTCATCTAGTGAGATGGGATTTTGTCACTCGTCCAAAAGACAAAGGTGGTATCGGCATTGACAAAGTTAGAATTACAAATGAAGCTCTCCTAGGGAAGTGGATTTGGAGATATGTCCCAGAACCCGATCAGTTATGGAGATCCCTTATTGATGGTATATATGCAACCTGCACTCCTGGATCAATTCCCAGCTTGAACAACTTTGGTAGTGCCAGAGCTCCTTGGTATCAAATCAGAAAGATGGAAGATCAAAAGTGGATCAAACATTCTGTTTTGGCACCACAATTGGGATGGAGGAATTGCGAAAAGAATCACCTGTCCAAGATTTTACAACATCTCCGAAAATAAGGTTATCACTGTAAAAGATGCCTGGAACTCCAATCAAAGCAGTTGGAATCCGTCCTTTAGAAGGCCCCTCTTGGACAGAGAGATGCAGGTATGGAAATCACTCTCCTCCGGCTGGCAGACTCCAATTCAAACAGAGGAACCGGACATAATCCTCTGGAACCTGGGCGATAAAGGTTTGTTCACCATTAAATCTTTAAAGCAGTATCTGTCAGCTAGCAGAAATTTGCCCAATCACCCGGATTTAACTCAAGTGTGGGCTTCCTATATCCCAAAAAAGTGTAAGTTTTTTCCTTGGTCACTTTATCATAGGAGCATCAACACCATAGACAAGTGTCAGTCACGTAATCCTTCAATGACCCTCAATCCTAATTGGTGTGTACTTTGTAAAAGAGAAAATAAAACAGTGGAACATCTTTTTATCACTTGCACTTACTCCAGCAGGTTTGGAGGAATTTTTATAACTTTGTCGTCGAATCAGCCGTGTCTCCTTCCTCTATAGCAGAAGCTATTCACTCCTTCTCATCCCTCAAGCACACAACAAAAAGAAGAACTTTGTTGCAAAACTTGATTGGTGCTACCCTCTGGACTGTTTGGCTGGAAAGAAACAACAGGACCTTCCATGATGGCAGCAAATCCCAAAGGCAATTGTGGGAAGATATCCTAAGCCTCTCTTCCCTTTGGTGTAAAAAATCACCTGATTGTAACTATAGCATTGCTAGTATCTCCCTCAATTGGAATGCTTTTCTGTAG

mRNA sequence

ATGGCTCGCAGATTTCCTTTGAGGATGTTTTTCCTTTTCGGGCATGCGTATTTAATGGCAATATGGAGCTTTGCTAGGGATGTGGAGATTATTGAATGCAATCCTAAGCAGAGTGGTTTTTGGGATCCCATCATTAAGCGTATAGATAAAAAGCTCTCCTCCTGGCAGCTTTCTTTCATCTCCAAAGGTGGCAGACTTACCCTGATTCAGGCGGTCCTGAGTAGCTCCGTTGAAAGGCTGATGAGAAACTTCCTTTGGAAAGACTTTGGAAATCAAAATGGCTCTCATCTAGTGAGATGGGATTTTGTCACTCGTCCAAAAGACAAAGGTGGTATCGGCATTGACAAAGTTAGAATTACAAATGAAGCTCTCCTAGGGAAGTGGATTTGGAGATATGTCCCAGAACCCGATCAGTTATGGAGATCCCTTATTGATGGTATATATGCAACCTGCACTCCTGGATCAATTCCCAGCTTGAACAACTTTGGTAGTGCCAGAGCTCCTTGTGGATCAAACATTCTGTTTTGGCACCACAATTGGGATGGAGGAATTGCGAAAAGAATCACCTGTCCAAGATTTTACAACATCTCCGAAAATAAGGTTATCACTGTAAAAGATGCCTGGAACTCCAATCAAAGCAGTTGGAATCCGTCCTTTAGAAGGCCCCTCTTGGACAGAGAGATGCAGACTCCAATTCAAACAGAGGAACCGGACATAATCCTCTGGAACCTGGGCGATAAAGGTTTGTTCACCATTAAATCTTTAAAGCAGTATCTGTCAGCTAGCAGAAATTTGCCCAATCACCCGGATTTAACTCAAGTTTGGAGGAATTTTTATAACTTTGTCGTCGAATCAGCCGTGTCTCCTTCCTCTATAGCAGAAGCTATTCACTCCTTCTCATCCCTCAAGCACACAACAAAAAGAAGAACTTTGTTGCAAAACTTGATTGGTGCTACCCTCTGGACTGTTTGGCTGGAAAGAAACAACAGGACCTTCCATGATGGCAGCAAATCCCAAAGGCAATTGTGGGAAGATATCCTAAGCCTCTCTTCCCTTTGGTGTAAAAAATCACCTGATTGTAACTATAGCATTGCTAGTATCTCCCTCAATTGGAATGCTTTTCTGTAG

Coding sequence (CDS)

ATGGCTCGCAGATTTCCTTTGAGGATGTTTTTCCTTTTCGGGCATGCGTATTTAATGGCAATATGGAGCTTTGCTAGGGATGTGGAGATTATTGAATGCAATCCTAAGCAGAGTGGTTTTTGGGATCCCATCATTAAGCGTATAGATAAAAAGCTCTCCTCCTGGCAGCTTTCTTTCATCTCCAAAGGTGGCAGACTTACCCTGATTCAGGCGGTCCTGAGTAGCTCCGTTGAAAGGCTGATGAGAAACTTCCTTTGGAAAGACTTTGGAAATCAAAATGGCTCTCATCTAGTGAGATGGGATTTTGTCACTCGTCCAAAAGACAAAGGTGGTATCGGCATTGACAAAGTTAGAATTACAAATGAAGCTCTCCTAGGGAAGTGGATTTGGAGATATGTCCCAGAACCCGATCAGTTATGGAGATCCCTTATTGATGGTATATATGCAACCTGCACTCCTGGATCAATTCCCAGCTTGAACAACTTTGGTAGTGCCAGAGCTCCTTGTGGATCAAACATTCTGTTTTGGCACCACAATTGGGATGGAGGAATTGCGAAAAGAATCACCTGTCCAAGATTTTACAACATCTCCGAAAATAAGGTTATCACTGTAAAAGATGCCTGGAACTCCAATCAAAGCAGTTGGAATCCGTCCTTTAGAAGGCCCCTCTTGGACAGAGAGATGCAGACTCCAATTCAAACAGAGGAACCGGACATAATCCTCTGGAACCTGGGCGATAAAGGTTTGTTCACCATTAAATCTTTAAAGCAGTATCTGTCAGCTAGCAGAAATTTGCCCAATCACCCGGATTTAACTCAAGTTTGGAGGAATTTTTATAACTTTGTCGTCGAATCAGCCGTGTCTCCTTCCTCTATAGCAGAAGCTATTCACTCCTTCTCATCCCTCAAGCACACAACAAAAAGAAGAACTTTGTTGCAAAACTTGATTGGTGCTACCCTCTGGACTGTTTGGCTGGAAAGAAACAACAGGACCTTCCATGATGGCAGCAAATCCCAAAGGCAATTGTGGGAAGATATCCTAAGCCTCTCTTCCCTTTGGTGTAAAAAATCACCTGATTGTAACTATAGCATTGCTAGTATCTCCCTCAATTGGAATGCTTTTCTGTAG

Protein sequence

MARRFPLRMFFLFGHAYLMAIWSFARDVEIIECNPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSSSVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAPCGSNILFWHHNWDGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPLLDREMQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPNHPDLTQVWRNFYNFVVESAVSPSSIAEAIHSFSSLKHTTKRRTLLQNLIGATLWTVWLERNNRTFHDGSKSQRQLWEDILSLSSLWCKKSPDCNYSIASISLNWNAFL
Homology
BLAST of ClCG02G006510 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 218.4 bits (555), Expect = 1.1e-52
Identity = 138/455 (30.33%), Postives = 192/455 (42.20%), Query Frame = 0

Query: 35   PKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SV 94
            P  S FWD I+++I KKLSSW+ S +SKGGR+TLI + L S                  +
Sbjct: 582  PSSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKI 641

Query: 95   ERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEPD 154
            E   RNFLW    N +   L+RW+ V  PK+KGG+GI  V  TN ALL KW+W+++ E +
Sbjct: 642  EAYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGLGIHSVHSTNFALLCKWLWKFLTEKE 701

Query: 155  QLWRSLIDGIYATCTPGSIPSLNNFGSARAP------C--------------GSNILFWH 214
             LW+ LI   Y     G  PS   + S  +P      C              G +I FW 
Sbjct: 702  PLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWL 761

Query: 215  HNWDGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPLLDRE---------- 274
             NW+G     +  PR + +S NK  +VKD WN +   WN    RPL D E          
Sbjct: 762  DNWNGNSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKAS 821

Query: 275  MQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPN--HPDLTQ------------ 334
            + TP+    P   LW L    +F   S+K+ LS +   P   HP L +            
Sbjct: 822  LPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCK 881

Query: 335  --VWRNFYNFV------------------------------------------------- 376
              +W   +  +                                                 
Sbjct: 882  FFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQA 941

BLAST of ClCG02G006510 vs. NCBI nr
Match: TYK00493.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 218.4 bits (555), Expect = 1.1e-52
Identity = 151/452 (33.41%), Postives = 200/452 (44.25%), Query Frame = 0

Query: 34   NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------S 93
            NPK + FW  I  RI KKLS+W+ + ISKGGRLTLI++ LSS                 +
Sbjct: 1332 NPKSNLFWRNIEDRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYKLSVFQAPSSTYKN 1391

Query: 94   VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
            +E+L RNFLWK      GSHL+ W  VT+PK++GG+GI ++++TN+ALL KW+WRY  EP
Sbjct: 1392 IEKLWRNFLWKGSCGLKGSHLINWSIVTKPKEEGGLGISRLQVTNQALLSKWLWRYYSEP 1451

Query: 154  DQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFW 213
            + LWR LI   Y    PG +PS  +  S++AP                     G  I FW
Sbjct: 1452 NSLWRRLIHIKYKGKHPGDLPSNISSSSSKAPWRSIINNIDWFKSNQGWDLNNGDQISFW 1511

Query: 214  HHNWDGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPLLDREMQT------ 273
            + NW          PR + +S +K  ++KD WNSN + W  +FRR L DRE+ T      
Sbjct: 1512 YSNWSPEGCLSTAYPRLFALSMDKESSIKDVWNSNNNQWEITFRRKLNDRELSTWQKILE 1571

Query: 274  --PI--QTEEPDIILWNLGDKGLFTIKSLKQYLS----ASRNLPNHPDLTQVW------- 333
              PI      P    W    K  F+I S K  +S     S   P    L  +W       
Sbjct: 1572 NLPILRTNRGPSKPTWIPDSKKFFSIASAKSCISHQPDRSVANPRVKLLNLIWKTHVPMK 1631

Query: 334  ----------RNFYNFVVESAVSP------------------------------------ 375
                      R      V + + P                                    
Sbjct: 1632 IKFFMWCLVQRKLNTMEVXTLLQPNWCVLCKKKSETGAHLFLHCDLVKPLWSLLHRSLNF 1691

BLAST of ClCG02G006510 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 217.2 bits (552), Expect = 2.3e-52
Identity = 138/455 (30.33%), Postives = 192/455 (42.20%), Query Frame = 0

Query: 35  PKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SV 94
           P  S FWD I+++I KKLSSW+ S +SKGGR+TLI + L S                  +
Sbjct: 488 PSSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKI 547

Query: 95  ERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEPD 154
           E   RNFLW    N +   L+RW+ V  PK+KGG+GI  V  TN ALL KW+W+++ E +
Sbjct: 548 EAYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGLGIHFVHSTNFALLCKWLWKFLTEKE 607

Query: 155 QLWRSLIDGIYATCTPGSIPSLNNFGSARAP------C--------------GSNILFWH 214
            LW+ LI   Y     G  PS   + S  +P      C              G +I FW 
Sbjct: 608 PLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWL 667

Query: 215 HNWDGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPLLDRE---------- 274
            NW+G     +  PR + +S NK  +VKD WN +   WN    RPL D E          
Sbjct: 668 DNWNGNSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKAS 727

Query: 275 MQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPN--HPDLTQ------------ 334
           + TP+    P   LW L    +F   S+K+ LS +   P   HP L +            
Sbjct: 728 LPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCK 787

Query: 335 --VWRNFYNFV------------------------------------------------- 376
             +W   +  +                                                 
Sbjct: 788 FFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQA 847

BLAST of ClCG02G006510 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 209.9 bits (533), Expect = 3.7e-50
Identity = 133/455 (29.23%), Postives = 195/455 (42.86%), Query Frame = 0

Query: 35   PKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SV 94
            P  S FWD ++++I KKLS+W+ S +SKGGR+TLI + L S                  +
Sbjct: 690  PSSSNFWDNVLQKIQKKLSNWKYSQLSKGGRITLINSTLESLPIYQMSVFKVPKGIAQKI 749

Query: 95   ERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEPD 154
            E   RNFLW    N +   L+RW+ +  PK+KGG+GI  V  TN ALL KW+W+++ E D
Sbjct: 750  EASWRNFLWNGASNGHNISLIRWNQIVSPKEKGGLGIHSVNSTNFALLCKWLWKFLTEKD 809

Query: 155  QLWRSLIDGIYATCTPGSIPSLNNFGSARAP------C--------------GSNILFWH 214
             LW+ LI   Y     GS PS   F S  +P      C              G +I FW 
Sbjct: 810  PLWKRLIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECISWFYKNISWKVNDGEDISFWL 869

Query: 215  HNWDGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPLLDRE---------- 274
             NW+G     +  PR + +S NK  +VK+ WN + + W+    RPL D E          
Sbjct: 870  DNWNGNAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLHINRPLRDHEENLWHNIKAS 929

Query: 275  MQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPN--HPDLTQ-VWRNFY----N 334
            + TP+        LWNL    +F   S+K+ ++ +   P   HP+L + +W+  +     
Sbjct: 930  LPTPLPNRGHPKPLWNLNSNNIFDTASVKRAIAEAPISPANFHPNLYKTLWKVEFPKKCK 989

Query: 335  FVVESAV----------------------------------------------------- 376
            F + + +                                                     
Sbjct: 990  FFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKA 1049

BLAST of ClCG02G006510 vs. NCBI nr
Match: TYK08190.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 206.1 bits (523), Expect = 5.4e-49
Identity = 139/455 (30.55%), Postives = 194/455 (42.64%), Query Frame = 0

Query: 34   NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------S 93
            NP+   FWD  I+ I KKL+ W+ S ISKGGRLTL++A LSS                  
Sbjct: 1369 NPRSRSFWDQTIECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKE 1428

Query: 94   VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
            +E+  R+FLW    ++  +HL+ W+  T PK+ GG+GI K++ TN+ALL KW+WRY  E 
Sbjct: 1429 IEKHWRDFLWGGSEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRYHNES 1488

Query: 154  DQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFW 213
            + LW+  ID  Y     G IP +    SA +P                     GS++ FW
Sbjct: 1489 NSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSSLSFW 1548

Query: 214  HHNWDGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPLLDREMQT--PIQT 273
            H  W   I   +  PR Y +S  +  TVK+ W+     WN   RRPL +RE QT   I+ 
Sbjct: 1549 HSKWHNNIPLSLQIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTWDSIKM 1608

Query: 274  EEPDI--------ILWNLGDKGLFTIKSLKQYLSASRNLPN----HPDLTQVWRN----- 333
              P I          WN  D   +T+ S K       ++P       +L  +WR+     
Sbjct: 1609 SLPRIHNNRGMCKPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRSHIPQK 1668

Query: 334  --FYNFVV----------------ESAVSPSSIAEAIHSFSSLKH--------------- 374
              F+ + +                  +++PS       S   + H               
Sbjct: 1669 CKFFIWTMVHQKLNTMDNIQKRNPSMSLNPSWCISCRSSNEDMNHLFIFCPFARSLWNMW 1728

BLAST of ClCG02G006510 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.9e-14
Identity = 40/122 (32.79%), Postives = 62/122 (50.82%), Query Frame = 0

Query: 44  IIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRNFLW 103
           I++R+  ++S W+   +S  GRLTL +AVLSS                  +++L R FLW
Sbjct: 16  ILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLW 75

Query: 104 KDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEPDQLWRSLIDG 149
                +   HLV+W  V  PK +GG+G+   +  N AL+ K  WR + E + LW  ++  
Sbjct: 76  GSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQK 135

BLAST of ClCG02G006510 vs. ExPASy TrEMBL
Match: A0A5D3BL61 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001020 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 5.1e-53
Identity = 151/452 (33.41%), Postives = 200/452 (44.25%), Query Frame = 0

Query: 34   NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------S 93
            NPK + FW  I  RI KKLS+W+ + ISKGGRLTLI++ LSS                 +
Sbjct: 1332 NPKSNLFWRNIEDRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYKLSVFQAPSSTYKN 1391

Query: 94   VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
            +E+L RNFLWK      GSHL+ W  VT+PK++GG+GI ++++TN+ALL KW+WRY  EP
Sbjct: 1392 IEKLWRNFLWKGSCGLKGSHLINWSIVTKPKEEGGLGISRLQVTNQALLSKWLWRYYSEP 1451

Query: 154  DQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFW 213
            + LWR LI   Y    PG +PS  +  S++AP                     G  I FW
Sbjct: 1452 NSLWRRLIHIKYKGKHPGDLPSNISSSSSKAPWRSIINNIDWFKSNQGWDLNNGDQISFW 1511

Query: 214  HHNWDGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPLLDREMQT------ 273
            + NW          PR + +S +K  ++KD WNSN + W  +FRR L DRE+ T      
Sbjct: 1512 YSNWSPEGCLSTAYPRLFALSMDKESSIKDVWNSNNNQWEITFRRKLNDRELSTWQKILE 1571

Query: 274  --PI--QTEEPDIILWNLGDKGLFTIKSLKQYLS----ASRNLPNHPDLTQVW------- 333
              PI      P    W    K  F+I S K  +S     S   P    L  +W       
Sbjct: 1572 NLPILRTNRGPSKPTWIPDSKKFFSIASAKSCISHQPDRSVANPRVKLLNLIWKTHVPMK 1631

Query: 334  ----------RNFYNFVVESAVSP------------------------------------ 375
                      R      V + + P                                    
Sbjct: 1632 IKFFMWCLVQRKLNTMEVXTLLQPNWCVLCKKKSETGAHLFLHCDLVKPLWSLLHRSLNF 1691

BLAST of ClCG02G006510 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 5.1e-53
Identity = 138/455 (30.33%), Postives = 192/455 (42.20%), Query Frame = 0

Query: 35   PKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SV 94
            P  S FWD I+++I KKLSSW+ S +SKGGR+TLI + L S                  +
Sbjct: 582  PSSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKI 641

Query: 95   ERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEPD 154
            E   RNFLW    N +   L+RW+ V  PK+KGG+GI  V  TN ALL KW+W+++ E +
Sbjct: 642  EAYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGLGIHSVHSTNFALLCKWLWKFLTEKE 701

Query: 155  QLWRSLIDGIYATCTPGSIPSLNNFGSARAP------C--------------GSNILFWH 214
             LW+ LI   Y     G  PS   + S  +P      C              G +I FW 
Sbjct: 702  PLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWL 761

Query: 215  HNWDGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPLLDRE---------- 274
             NW+G     +  PR + +S NK  +VKD WN +   WN    RPL D E          
Sbjct: 762  DNWNGNSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKAS 821

Query: 275  MQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPN--HPDLTQ------------ 334
            + TP+    P   LW L    +F   S+K+ LS +   P   HP L +            
Sbjct: 822  LPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCK 881

Query: 335  --VWRNFYNFV------------------------------------------------- 376
              +W   +  +                                                 
Sbjct: 882  FFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQA 941

BLAST of ClCG02G006510 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.1e-52
Identity = 138/455 (30.33%), Postives = 192/455 (42.20%), Query Frame = 0

Query: 35  PKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SV 94
           P  S FWD I+++I KKLSSW+ S +SKGGR+TLI + L S                  +
Sbjct: 488 PSSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKI 547

Query: 95  ERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEPD 154
           E   RNFLW    N +   L+RW+ V  PK+KGG+GI  V  TN ALL KW+W+++ E +
Sbjct: 548 EAYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGLGIHFVHSTNFALLCKWLWKFLTEKE 607

Query: 155 QLWRSLIDGIYATCTPGSIPSLNNFGSARAP------C--------------GSNILFWH 214
            LW+ LI   Y     G  PS   + S  +P      C              G +I FW 
Sbjct: 608 PLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWL 667

Query: 215 HNWDGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPLLDRE---------- 274
            NW+G     +  PR + +S NK  +VKD WN +   WN    RPL D E          
Sbjct: 668 DNWNGNSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKAS 727

Query: 275 MQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPN--HPDLTQ------------ 334
           + TP+    P   LW L    +F   S+K+ LS +   P   HP L +            
Sbjct: 728 LPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCK 787

Query: 335 --VWRNFYNFV------------------------------------------------- 376
             +W   +  +                                                 
Sbjct: 788 FFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQA 847

BLAST of ClCG02G006510 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.8e-50
Identity = 133/455 (29.23%), Postives = 195/455 (42.86%), Query Frame = 0

Query: 35   PKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SV 94
            P  S FWD ++++I KKLS+W+ S +SKGGR+TLI + L S                  +
Sbjct: 690  PSSSNFWDNVLQKIQKKLSNWKYSQLSKGGRITLINSTLESLPIYQMSVFKVPKGIAQKI 749

Query: 95   ERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEPD 154
            E   RNFLW    N +   L+RW+ +  PK+KGG+GI  V  TN ALL KW+W+++ E D
Sbjct: 750  EASWRNFLWNGASNGHNISLIRWNQIVSPKEKGGLGIHSVNSTNFALLCKWLWKFLTEKD 809

Query: 155  QLWRSLIDGIYATCTPGSIPSLNNFGSARAP------C--------------GSNILFWH 214
             LW+ LI   Y     GS PS   F S  +P      C              G +I FW 
Sbjct: 810  PLWKRLIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECISWFYKNISWKVNDGEDISFWL 869

Query: 215  HNWDGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPLLDRE---------- 274
             NW+G     +  PR + +S NK  +VK+ WN + + W+    RPL D E          
Sbjct: 870  DNWNGNAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLHINRPLRDHEENLWHNIKAS 929

Query: 275  MQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPN--HPDLTQ-VWRNFY----N 334
            + TP+        LWNL    +F   S+K+ ++ +   P   HP+L + +W+  +     
Sbjct: 930  LPTPLPNRGHPKPLWNLNSNNIFDTASVKRAIAEAPISPANFHPNLYKTLWKVEFPKKCK 989

Query: 335  FVVESAV----------------------------------------------------- 376
            F + + +                                                     
Sbjct: 990  FFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKA 1049

BLAST of ClCG02G006510 vs. ExPASy TrEMBL
Match: A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.6e-49
Identity = 139/455 (30.55%), Postives = 194/455 (42.64%), Query Frame = 0

Query: 34   NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------S 93
            NP+   FWD  I+ I KKL+ W+ S ISKGGRLTL++A LSS                  
Sbjct: 1369 NPRSRSFWDQTIECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKE 1428

Query: 94   VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
            +E+  R+FLW    ++  +HL+ W+  T PK+ GG+GI K++ TN+ALL KW+WRY  E 
Sbjct: 1429 IEKHWRDFLWGGSEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRYHNES 1488

Query: 154  DQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFW 213
            + LW+  ID  Y     G IP +    SA +P                     GS++ FW
Sbjct: 1489 NSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSSLSFW 1548

Query: 214  HHNWDGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPLLDREMQT--PIQT 273
            H  W   I   +  PR Y +S  +  TVK+ W+     WN   RRPL +RE QT   I+ 
Sbjct: 1549 HSKWHNNIPLSLQIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTWDSIKM 1608

Query: 274  EEPDI--------ILWNLGDKGLFTIKSLKQYLSASRNLPN----HPDLTQVWRN----- 333
              P I          WN  D   +T+ S K       ++P       +L  +WR+     
Sbjct: 1609 SLPRIHNNRGMCKPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRSHIPQK 1668

Query: 334  --FYNFVV----------------ESAVSPSSIAEAIHSFSSLKH--------------- 374
              F+ + +                  +++PS       S   + H               
Sbjct: 1669 CKFFIWTMVHQKLNTMDNIQKRNPSMSLNPSWCISCRSSNEDMNHLFIFCPFARSLWNMW 1728

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0041397.11.1e-5230.33LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK00493.11.1e-5233.41LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0044556.12.3e-5230.33LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0039950.13.7e-5029.23LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... [more]
TYK08190.15.4e-4930.55LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P0C2F65.9e-1432.79Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
Match NameE-valueIdentityDescription
A0A5D3BL615.1e-5333.41LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TIB85.1e-5330.33LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TR151.1e-5230.33LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7T9I71.8e-5029.23LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7US622.6e-4930.55LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33116:SF33OS01G0885550 PROTEINcoord: 32..263
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 32..263

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G006510.1ClCG02G006510.1mRNA