Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGCAGATTTCCTTTGAGGATGTTTTTCCTTTTCGGGCATGCGTATTTAATGGCAATATGGAGCTTTGCTAGGGATGTGGAGATTATTGAATGTACTTGAATGTTTTGTTTTTTGGTGAAGCCGAAATTTGGTTCTTTATTATGTTGTGCAAGTTGTTGATAAAACTTTTTTGTGCAAGAAGCAAGTCATAGTCTTAGGGGAGCCTAATATGTCATGACGGGAGAAAGAGCTCTCCAACTTAAGGCGTACTTAAGTTAGATCAGTGAAGGTCATTCATTGAAGGAAAAAAAAAAACTAGGAAGATCACAACAATAGAGAGGAAGTCCCAAACATTGAGGAGAGTTGAAGCGTTCAACACTAATATTAATACACTCTCGCAGATAGGGGAGCTTAGGTGATCTATGAGTTAGACTCAATGGGAGCCACTGTAGTAGTCGCTATATTACAGATAAGTACTACGTTGTAATTGTTTGACTTTTTAATATTAGTGAATTATCTTTCATGGGCATACTGTCTAGGGGTTAGGAGTAAGTGGTTATCATCTAATTGGGTTACTAATTTTTGTGCATTTTTTTTTAATCTCTGTTATAATGCGTGCGTATGCTTTCTGTTTGACATCTGTGTTCTGAGTTATGTGTCATCTATTTGTTCAATTGTATATATAGCAAATTTGTGTTGTTTTGCAGATCCTTTTCTTAAAAAAAAAATTCAACTTTTCTTTTAACAGATCTTTTGTCTTTTGAAATACGAGAAAGAAATAATATTAAAAGTAAATAAATCTTTTAGCATCCTCATCTTCTAAAAATAAAAAGAAAAAAAGAAAAAGCATGGATTGTATTTAATTCAACTTATATGCATGATTGACAATAAGTATACAAATTATATTCTACCAACCAAAATAATCATGAACCAATCAAGTTTAAAAGTCTCTATTTAATATATATTATAAAATAAGTTATTTATGTGGAGATCAATGGCTATGGCGATTGATGAAGATCAACCAAACTAGTATGGAATTTTAATTTTCATTGATTACACACAATACATGTTCAGAAATAAGATTAGATAATATCAAAATAGGAATTAGTATAAAAATATCAAGTAAGGATTTGAGAAGAGACGAAAAACGGAAACATTGGGAGGTCAAAAACAATAAATAAAAATTAATTATCACATGTGTGTTTGGTCCTAAGTTTTCAAAACATACCATTATTTTAGTCTTAAGGTTTCAAAAATAAATTTAAAAGGTCATTACAATGATTTATTATCACCTTCCGCTTTTAAGGTATATCTTACCAAGTCTCCGTATATTTGTCAAATGCCTTAAAAAATAGGAATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATCTTTTCAACATTTAAACCTTTACTTATACAGATTCCTCATATGAAAGAAAACTATAACACAAACTTTAATCAATTTGAGCTTAAAGGAGGGAAAACACTATGAAATTGGTTGCCTCTGGGAGGCAATCCTAAGCAGAGTGGTTTTTGGGATCCCATCATTAAGCGTATAGATAAAAAGCTCTCCTCCTGGCAGCTTTCTTTCATCTCCAAAGGTGGCAGACTTACCCTGATTCAGGCGGTCCTGAGTAGTATACCAACATATTTCATGTCTCTCTTCAAGGCTCCGTTGAAAGGCTGATGAGAAACTTCCTTTGGAAAGACTTTGGAAATCAAAATGGCTCTCATCTAGTGAGATGGGATTTTGTCACTCGTCCAAAAGACAAAGGTGGTATCGGCATTGACAAAGTTAGAATTACAAATGAAGCTCTCCTAGGGAAGTGGATTTGGAGATATGTCCCAGAACCCGATCAGTTATGGAGATCCCTTATTGATGGTATATATGCAACCTGCACTCCTGGATCAATTCCCAGCTTGAACAACTTTGGTAGTGCCAGAGCTCCTTGGTATCAAATCAGAAAGATGGAAGATCAAAAGTGGATCAAACATTCTGTTTTGGCACCACAATTGGGATGGAGGAATTGCGAAAAGAATCACCTGTCCAAGATTTTACAACATCTCCGAAAATAAGGTTATCACTGTAAAAGATGCCTGGAACTCCAATCAAAGCAGTTGGAATCCGTCCTTTAGAAGGCCCCTCTTGGACAGAGAGATGCAGGTATGGAAATCACTCTCCTCCGGCTGGCAGACTCCAATTCAAACAGAGGAACCGGACATAATCCTCTGGAACCTGGGCGATAAAGGTTTGTTCACCATTAAATCTTTAAAGCAGTATCTGTCAGCTAGCAGAAATTTGCCCAATCACCCGGATTTAACTCAAGTGTGGGCTTCCTATATCCCAAAAAAGTGTAAGTTTTTTCCTTGGTCACTTTATCATAGGAGCATCAACACCATAGACAAGTGTCAGTCACGTAATCCTTCAATGACCCTCAATCCTAATTGGTGTGTACTTTGTAAAAGAGAAAATAAAACAGTGGAACATCTTTTTATCACTTGCACTTACTCCAGCAGGTTTGGAGGAATTTTTATAACTTTGTCGTCGAATCAGCCGTGTCTCCTTCCTCTATAGCAGAAGCTATTCACTCCTTCTCATCCCTCAAGCACACAACAAAAAGAAGAACTTTGTTGCAAAACTTGATTGGTGCTACCCTCTGGACTGTTTGGCTGGAAAGAAACAACAGGACCTTCCATGATGGCAGCAAATCCCAAAGGCAATTGTGGGAAGATATCCTAAGCCTCTCTTCCCTTTGGTGTAAAAAATCACCTGATTGTAACTATAGCATTGCTAGTATCTCCCTCAATTGGAATGCTTTTCTGTAG
mRNA sequence
ATGGCTCGCAGATTTCCTTTGAGGATGTTTTTCCTTTTCGGGCATGCGTATTTAATGGCAATATGGAGCTTTGCTAGGGATGTGGAGATTATTGAATGCAATCCTAAGCAGAGTGGTTTTTGGGATCCCATCATTAAGCGTATAGATAAAAAGCTCTCCTCCTGGCAGCTTTCTTTCATCTCCAAAGGTGGCAGACTTACCCTGATTCAGGCGGTCCTGAGTAGCTCCGTTGAAAGGCTGATGAGAAACTTCCTTTGGAAAGACTTTGGAAATCAAAATGGCTCTCATCTAGTGAGATGGGATTTTGTCACTCGTCCAAAAGACAAAGGTGGTATCGGCATTGACAAAGTTAGAATTACAAATGAAGCTCTCCTAGGGAAGTGGATTTGGAGATATGTCCCAGAACCCGATCAGTTATGGAGATCCCTTATTGATGGTATATATGCAACCTGCACTCCTGGATCAATTCCCAGCTTGAACAACTTTGGTAGTGCCAGAGCTCCTTGTGGATCAAACATTCTGTTTTGGCACCACAATTGGGATGGAGGAATTGCGAAAAGAATCACCTGTCCAAGATTTTACAACATCTCCGAAAATAAGGTTATCACTGTAAAAGATGCCTGGAACTCCAATCAAAGCAGTTGGAATCCGTCCTTTAGAAGGCCCCTCTTGGACAGAGAGATGCAGACTCCAATTCAAACAGAGGAACCGGACATAATCCTCTGGAACCTGGGCGATAAAGGTTTGTTCACCATTAAATCTTTAAAGCAGTATCTGTCAGCTAGCAGAAATTTGCCCAATCACCCGGATTTAACTCAAGTTTGGAGGAATTTTTATAACTTTGTCGTCGAATCAGCCGTGTCTCCTTCCTCTATAGCAGAAGCTATTCACTCCTTCTCATCCCTCAAGCACACAACAAAAAGAAGAACTTTGTTGCAAAACTTGATTGGTGCTACCCTCTGGACTGTTTGGCTGGAAAGAAACAACAGGACCTTCCATGATGGCAGCAAATCCCAAAGGCAATTGTGGGAAGATATCCTAAGCCTCTCTTCCCTTTGGTGTAAAAAATCACCTGATTGTAACTATAGCATTGCTAGTATCTCCCTCAATTGGAATGCTTTTCTGTAG
Coding sequence (CDS)
ATGGCTCGCAGATTTCCTTTGAGGATGTTTTTCCTTTTCGGGCATGCGTATTTAATGGCAATATGGAGCTTTGCTAGGGATGTGGAGATTATTGAATGCAATCCTAAGCAGAGTGGTTTTTGGGATCCCATCATTAAGCGTATAGATAAAAAGCTCTCCTCCTGGCAGCTTTCTTTCATCTCCAAAGGTGGCAGACTTACCCTGATTCAGGCGGTCCTGAGTAGCTCCGTTGAAAGGCTGATGAGAAACTTCCTTTGGAAAGACTTTGGAAATCAAAATGGCTCTCATCTAGTGAGATGGGATTTTGTCACTCGTCCAAAAGACAAAGGTGGTATCGGCATTGACAAAGTTAGAATTACAAATGAAGCTCTCCTAGGGAAGTGGATTTGGAGATATGTCCCAGAACCCGATCAGTTATGGAGATCCCTTATTGATGGTATATATGCAACCTGCACTCCTGGATCAATTCCCAGCTTGAACAACTTTGGTAGTGCCAGAGCTCCTTGTGGATCAAACATTCTGTTTTGGCACCACAATTGGGATGGAGGAATTGCGAAAAGAATCACCTGTCCAAGATTTTACAACATCTCCGAAAATAAGGTTATCACTGTAAAAGATGCCTGGAACTCCAATCAAAGCAGTTGGAATCCGTCCTTTAGAAGGCCCCTCTTGGACAGAGAGATGCAGACTCCAATTCAAACAGAGGAACCGGACATAATCCTCTGGAACCTGGGCGATAAAGGTTTGTTCACCATTAAATCTTTAAAGCAGTATCTGTCAGCTAGCAGAAATTTGCCCAATCACCCGGATTTAACTCAAGTTTGGAGGAATTTTTATAACTTTGTCGTCGAATCAGCCGTGTCTCCTTCCTCTATAGCAGAAGCTATTCACTCCTTCTCATCCCTCAAGCACACAACAAAAAGAAGAACTTTGTTGCAAAACTTGATTGGTGCTACCCTCTGGACTGTTTGGCTGGAAAGAAACAACAGGACCTTCCATGATGGCAGCAAATCCCAAAGGCAATTGTGGGAAGATATCCTAAGCCTCTCTTCCCTTTGGTGTAAAAAATCACCTGATTGTAACTATAGCATTGCTAGTATCTCCCTCAATTGGAATGCTTTTCTGTAG
Protein sequence
MARRFPLRMFFLFGHAYLMAIWSFARDVEIIECNPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSSSVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAPCGSNILFWHHNWDGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPLLDREMQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPNHPDLTQVWRNFYNFVVESAVSPSSIAEAIHSFSSLKHTTKRRTLLQNLIGATLWTVWLERNNRTFHDGSKSQRQLWEDILSLSSLWCKKSPDCNYSIASISLNWNAFL
Homology
BLAST of ClCG02G006510 vs. NCBI nr
Match:
KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 218.4 bits (555), Expect = 1.1e-52
Identity = 138/455 (30.33%), Postives = 192/455 (42.20%), Query Frame = 0
Query: 35 PKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SV 94
P S FWD I+++I KKLSSW+ S +SKGGR+TLI + L S +
Sbjct: 582 PSSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKI 641
Query: 95 ERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEPD 154
E RNFLW N + L+RW+ V PK+KGG+GI V TN ALL KW+W+++ E +
Sbjct: 642 EAYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGLGIHSVHSTNFALLCKWLWKFLTEKE 701
Query: 155 QLWRSLIDGIYATCTPGSIPSLNNFGSARAP------C--------------GSNILFWH 214
LW+ LI Y G PS + S +P C G +I FW
Sbjct: 702 PLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWL 761
Query: 215 HNWDGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPLLDRE---------- 274
NW+G + PR + +S NK +VKD WN + WN RPL D E
Sbjct: 762 DNWNGNSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKAS 821
Query: 275 MQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPN--HPDLTQ------------ 334
+ TP+ P LW L +F S+K+ LS + P HP L +
Sbjct: 822 LPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCK 881
Query: 335 --VWRNFYNFV------------------------------------------------- 376
+W + +
Sbjct: 882 FFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQA 941
BLAST of ClCG02G006510 vs. NCBI nr
Match:
TYK00493.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 218.4 bits (555), Expect = 1.1e-52
Identity = 151/452 (33.41%), Postives = 200/452 (44.25%), Query Frame = 0
Query: 34 NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------S 93
NPK + FW I RI KKLS+W+ + ISKGGRLTLI++ LSS +
Sbjct: 1332 NPKSNLFWRNIEDRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYKLSVFQAPSSTYKN 1391
Query: 94 VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
+E+L RNFLWK GSHL+ W VT+PK++GG+GI ++++TN+ALL KW+WRY EP
Sbjct: 1392 IEKLWRNFLWKGSCGLKGSHLINWSIVTKPKEEGGLGISRLQVTNQALLSKWLWRYYSEP 1451
Query: 154 DQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFW 213
+ LWR LI Y PG +PS + S++AP G I FW
Sbjct: 1452 NSLWRRLIHIKYKGKHPGDLPSNISSSSSKAPWRSIINNIDWFKSNQGWDLNNGDQISFW 1511
Query: 214 HHNWDGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPLLDREMQT------ 273
+ NW PR + +S +K ++KD WNSN + W +FRR L DRE+ T
Sbjct: 1512 YSNWSPEGCLSTAYPRLFALSMDKESSIKDVWNSNNNQWEITFRRKLNDRELSTWQKILE 1571
Query: 274 --PI--QTEEPDIILWNLGDKGLFTIKSLKQYLS----ASRNLPNHPDLTQVW------- 333
PI P W K F+I S K +S S P L +W
Sbjct: 1572 NLPILRTNRGPSKPTWIPDSKKFFSIASAKSCISHQPDRSVANPRVKLLNLIWKTHVPMK 1631
Query: 334 ----------RNFYNFVVESAVSP------------------------------------ 375
R V + + P
Sbjct: 1632 IKFFMWCLVQRKLNTMEVXTLLQPNWCVLCKKKSETGAHLFLHCDLVKPLWSLLHRSLNF 1691
BLAST of ClCG02G006510 vs. NCBI nr
Match:
KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 217.2 bits (552), Expect = 2.3e-52
Identity = 138/455 (30.33%), Postives = 192/455 (42.20%), Query Frame = 0
Query: 35 PKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SV 94
P S FWD I+++I KKLSSW+ S +SKGGR+TLI + L S +
Sbjct: 488 PSSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKI 547
Query: 95 ERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEPD 154
E RNFLW N + L+RW+ V PK+KGG+GI V TN ALL KW+W+++ E +
Sbjct: 548 EAYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGLGIHFVHSTNFALLCKWLWKFLTEKE 607
Query: 155 QLWRSLIDGIYATCTPGSIPSLNNFGSARAP------C--------------GSNILFWH 214
LW+ LI Y G PS + S +P C G +I FW
Sbjct: 608 PLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWL 667
Query: 215 HNWDGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPLLDRE---------- 274
NW+G + PR + +S NK +VKD WN + WN RPL D E
Sbjct: 668 DNWNGNSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKAS 727
Query: 275 MQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPN--HPDLTQ------------ 334
+ TP+ P LW L +F S+K+ LS + P HP L +
Sbjct: 728 LPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCK 787
Query: 335 --VWRNFYNFV------------------------------------------------- 376
+W + +
Sbjct: 788 FFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQA 847
BLAST of ClCG02G006510 vs. NCBI nr
Match:
KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 209.9 bits (533), Expect = 3.7e-50
Identity = 133/455 (29.23%), Postives = 195/455 (42.86%), Query Frame = 0
Query: 35 PKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SV 94
P S FWD ++++I KKLS+W+ S +SKGGR+TLI + L S +
Sbjct: 690 PSSSNFWDNVLQKIQKKLSNWKYSQLSKGGRITLINSTLESLPIYQMSVFKVPKGIAQKI 749
Query: 95 ERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEPD 154
E RNFLW N + L+RW+ + PK+KGG+GI V TN ALL KW+W+++ E D
Sbjct: 750 EASWRNFLWNGASNGHNISLIRWNQIVSPKEKGGLGIHSVNSTNFALLCKWLWKFLTEKD 809
Query: 155 QLWRSLIDGIYATCTPGSIPSLNNFGSARAP------C--------------GSNILFWH 214
LW+ LI Y GS PS F S +P C G +I FW
Sbjct: 810 PLWKRLIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECISWFYKNISWKVNDGEDISFWL 869
Query: 215 HNWDGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPLLDRE---------- 274
NW+G + PR + +S NK +VK+ WN + + W+ RPL D E
Sbjct: 870 DNWNGNAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLHINRPLRDHEENLWHNIKAS 929
Query: 275 MQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPN--HPDLTQ-VWRNFY----N 334
+ TP+ LWNL +F S+K+ ++ + P HP+L + +W+ +
Sbjct: 930 LPTPLPNRGHPKPLWNLNSNNIFDTASVKRAIAEAPISPANFHPNLYKTLWKVEFPKKCK 989
Query: 335 FVVESAV----------------------------------------------------- 376
F + + +
Sbjct: 990 FFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKA 1049
BLAST of ClCG02G006510 vs. NCBI nr
Match:
TYK08190.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 206.1 bits (523), Expect = 5.4e-49
Identity = 139/455 (30.55%), Postives = 194/455 (42.64%), Query Frame = 0
Query: 34 NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------S 93
NP+ FWD I+ I KKL+ W+ S ISKGGRLTL++A LSS
Sbjct: 1369 NPRSRSFWDQTIECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKE 1428
Query: 94 VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
+E+ R+FLW ++ +HL+ W+ T PK+ GG+GI K++ TN+ALL KW+WRY E
Sbjct: 1429 IEKHWRDFLWGGSEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRYHNES 1488
Query: 154 DQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFW 213
+ LW+ ID Y G IP + SA +P GS++ FW
Sbjct: 1489 NSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSSLSFW 1548
Query: 214 HHNWDGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPLLDREMQT--PIQT 273
H W I + PR Y +S + TVK+ W+ WN RRPL +RE QT I+
Sbjct: 1549 HSKWHNNIPLSLQIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTWDSIKM 1608
Query: 274 EEPDI--------ILWNLGDKGLFTIKSLKQYLSASRNLPN----HPDLTQVWRN----- 333
P I WN D +T+ S K ++P +L +WR+
Sbjct: 1609 SLPRIHNNRGMCKPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRSHIPQK 1668
Query: 334 --FYNFVV----------------ESAVSPSSIAEAIHSFSSLKH--------------- 374
F+ + + +++PS S + H
Sbjct: 1669 CKFFIWTMVHQKLNTMDNIQKRNPSMSLNPSWCISCRSSNEDMNHLFIFCPFARSLWNMW 1728
BLAST of ClCG02G006510 vs. ExPASy Swiss-Prot
Match:
P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)
HSP 1 Score: 80.1 bits (196), Expect = 5.9e-14
Identity = 40/122 (32.79%), Postives = 62/122 (50.82%), Query Frame = 0
Query: 44 IIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRNFLW 103
I++R+ ++S W+ +S GRLTL +AVLSS +++L R FLW
Sbjct: 16 ILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLW 75
Query: 104 KDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEPDQLWRSLIDG 149
+ HLV+W V PK +GG+G+ + N AL+ K WR + E + LW ++
Sbjct: 76 GSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQK 135
BLAST of ClCG02G006510 vs. ExPASy TrEMBL
Match:
A0A5D3BL61 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001020 PE=4 SV=1)
HSP 1 Score: 218.4 bits (555), Expect = 5.1e-53
Identity = 151/452 (33.41%), Postives = 200/452 (44.25%), Query Frame = 0
Query: 34 NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------S 93
NPK + FW I RI KKLS+W+ + ISKGGRLTLI++ LSS +
Sbjct: 1332 NPKSNLFWRNIEDRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYKLSVFQAPSSTYKN 1391
Query: 94 VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
+E+L RNFLWK GSHL+ W VT+PK++GG+GI ++++TN+ALL KW+WRY EP
Sbjct: 1392 IEKLWRNFLWKGSCGLKGSHLINWSIVTKPKEEGGLGISRLQVTNQALLSKWLWRYYSEP 1451
Query: 154 DQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFW 213
+ LWR LI Y PG +PS + S++AP G I FW
Sbjct: 1452 NSLWRRLIHIKYKGKHPGDLPSNISSSSSKAPWRSIINNIDWFKSNQGWDLNNGDQISFW 1511
Query: 214 HHNWDGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPLLDREMQT------ 273
+ NW PR + +S +K ++KD WNSN + W +FRR L DRE+ T
Sbjct: 1512 YSNWSPEGCLSTAYPRLFALSMDKESSIKDVWNSNNNQWEITFRRKLNDRELSTWQKILE 1571
Query: 274 --PI--QTEEPDIILWNLGDKGLFTIKSLKQYLS----ASRNLPNHPDLTQVW------- 333
PI P W K F+I S K +S S P L +W
Sbjct: 1572 NLPILRTNRGPSKPTWIPDSKKFFSIASAKSCISHQPDRSVANPRVKLLNLIWKTHVPMK 1631
Query: 334 ----------RNFYNFVVESAVSP------------------------------------ 375
R V + + P
Sbjct: 1632 IKFFMWCLVQRKLNTMEVXTLLQPNWCVLCKKKSETGAHLFLHCDLVKPLWSLLHRSLNF 1691
BLAST of ClCG02G006510 vs. ExPASy TrEMBL
Match:
A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)
HSP 1 Score: 218.4 bits (555), Expect = 5.1e-53
Identity = 138/455 (30.33%), Postives = 192/455 (42.20%), Query Frame = 0
Query: 35 PKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SV 94
P S FWD I+++I KKLSSW+ S +SKGGR+TLI + L S +
Sbjct: 582 PSSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKI 641
Query: 95 ERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEPD 154
E RNFLW N + L+RW+ V PK+KGG+GI V TN ALL KW+W+++ E +
Sbjct: 642 EAYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGLGIHSVHSTNFALLCKWLWKFLTEKE 701
Query: 155 QLWRSLIDGIYATCTPGSIPSLNNFGSARAP------C--------------GSNILFWH 214
LW+ LI Y G PS + S +P C G +I FW
Sbjct: 702 PLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWL 761
Query: 215 HNWDGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPLLDRE---------- 274
NW+G + PR + +S NK +VKD WN + WN RPL D E
Sbjct: 762 DNWNGNSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKAS 821
Query: 275 MQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPN--HPDLTQ------------ 334
+ TP+ P LW L +F S+K+ LS + P HP L +
Sbjct: 822 LPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCK 881
Query: 335 --VWRNFYNFV------------------------------------------------- 376
+W + +
Sbjct: 882 FFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQA 941
BLAST of ClCG02G006510 vs. ExPASy TrEMBL
Match:
A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)
HSP 1 Score: 217.2 bits (552), Expect = 1.1e-52
Identity = 138/455 (30.33%), Postives = 192/455 (42.20%), Query Frame = 0
Query: 35 PKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SV 94
P S FWD I+++I KKLSSW+ S +SKGGR+TLI + L S +
Sbjct: 488 PSSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKI 547
Query: 95 ERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEPD 154
E RNFLW N + L+RW+ V PK+KGG+GI V TN ALL KW+W+++ E +
Sbjct: 548 EAYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGLGIHFVHSTNFALLCKWLWKFLTEKE 607
Query: 155 QLWRSLIDGIYATCTPGSIPSLNNFGSARAP------C--------------GSNILFWH 214
LW+ LI Y G PS + S +P C G +I FW
Sbjct: 608 PLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWL 667
Query: 215 HNWDGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPLLDRE---------- 274
NW+G + PR + +S NK +VKD WN + WN RPL D E
Sbjct: 668 DNWNGNSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKAS 727
Query: 275 MQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPN--HPDLTQ------------ 334
+ TP+ P LW L +F S+K+ LS + P HP L +
Sbjct: 728 LPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCK 787
Query: 335 --VWRNFYNFV------------------------------------------------- 376
+W + +
Sbjct: 788 FFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQA 847
BLAST of ClCG02G006510 vs. ExPASy TrEMBL
Match:
A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)
HSP 1 Score: 209.9 bits (533), Expect = 1.8e-50
Identity = 133/455 (29.23%), Postives = 195/455 (42.86%), Query Frame = 0
Query: 35 PKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SV 94
P S FWD ++++I KKLS+W+ S +SKGGR+TLI + L S +
Sbjct: 690 PSSSNFWDNVLQKIQKKLSNWKYSQLSKGGRITLINSTLESLPIYQMSVFKVPKGIAQKI 749
Query: 95 ERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEPD 154
E RNFLW N + L+RW+ + PK+KGG+GI V TN ALL KW+W+++ E D
Sbjct: 750 EASWRNFLWNGASNGHNISLIRWNQIVSPKEKGGLGIHSVNSTNFALLCKWLWKFLTEKD 809
Query: 155 QLWRSLIDGIYATCTPGSIPSLNNFGSARAP------C--------------GSNILFWH 214
LW+ LI Y GS PS F S +P C G +I FW
Sbjct: 810 PLWKRLIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECISWFYKNISWKVNDGEDISFWL 869
Query: 215 HNWDGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPLLDRE---------- 274
NW+G + PR + +S NK +VK+ WN + + W+ RPL D E
Sbjct: 870 DNWNGNAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLHINRPLRDHEENLWHNIKAS 929
Query: 275 MQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPN--HPDLTQ-VWRNFY----N 334
+ TP+ LWNL +F S+K+ ++ + P HP+L + +W+ +
Sbjct: 930 LPTPLPNRGHPKPLWNLNSNNIFDTASVKRAIAEAPISPANFHPNLYKTLWKVEFPKKCK 989
Query: 335 FVVESAV----------------------------------------------------- 376
F + + +
Sbjct: 990 FFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKA 1049
BLAST of ClCG02G006510 vs. ExPASy TrEMBL
Match:
A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)
HSP 1 Score: 206.1 bits (523), Expect = 2.6e-49
Identity = 139/455 (30.55%), Postives = 194/455 (42.64%), Query Frame = 0
Query: 34 NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------S 93
NP+ FWD I+ I KKL+ W+ S ISKGGRLTL++A LSS
Sbjct: 1369 NPRSRSFWDQTIECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKE 1428
Query: 94 VERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLGKWIWRYVPEP 153
+E+ R+FLW ++ +HL+ W+ T PK+ GG+GI K++ TN+ALL KW+WRY E
Sbjct: 1429 IEKHWRDFLWGGSEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRYHNES 1488
Query: 154 DQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFW 213
+ LW+ ID Y G IP + SA +P GS++ FW
Sbjct: 1489 NSLWKKCIDAKYTKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSSLSFW 1548
Query: 214 HHNWDGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFRRPLLDREMQT--PIQT 273
H W I + PR Y +S + TVK+ W+ WN RRPL +RE QT I+
Sbjct: 1549 HSKWHNNIPLSLQIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNEREQQTWDSIKM 1608
Query: 274 EEPDI--------ILWNLGDKGLFTIKSLKQYLSASRNLPN----HPDLTQVWRN----- 333
P I WN D +T+ S K ++P +L +WR+
Sbjct: 1609 SLPRIHNNRGMCKPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRSHIPQK 1668
Query: 334 --FYNFVV----------------ESAVSPSSIAEAIHSFSSLKH--------------- 374
F+ + + +++PS S + H
Sbjct: 1669 CKFFIWTMVHQKLNTMDNIQKRNPSMSLNPSWCISCRSSNEDMNHLFIFCPFARSLWNMW 1728
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0041397.1 | 1.1e-52 | 30.33 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
TYK00493.1 | 1.1e-52 | 33.41 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0044556.1 | 2.3e-52 | 30.33 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0039950.1 | 3.7e-50 | 29.23 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... | [more] |
TYK08190.1 | 5.4e-49 | 30.55 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
P0C2F6 | 5.9e-14 | 32.79 | Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... | [more] |
Match Name | E-value | Identity | Description | |
A0A5D3BL61 | 5.1e-53 | 33.41 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7TIB8 | 5.1e-53 | 30.33 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7TR15 | 1.1e-52 | 30.33 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7T9I7 | 1.8e-50 | 29.23 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7US62 | 2.6e-49 | 30.55 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
Match Name | E-value | Identity | Description | |