ClCG02G006140 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G006140
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Retrotrans_gag domain-containing protein
Location	CG_Chr02: 6817791 .. 6820248 (+)
RNA-Seq Expression	ClCG02G006140
Synteny	ClCG02G006140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCAACAAATTGCGCCACAAACGCCTATAACTCGTCTAGCATAGCCAAGGATGAGCGAGGAGGAAAGGCCAAGACGTCCCCAAGCATAGCACACGCAAGTGCCAAGGCACCACACATGGTTGCCAAGGGTGCCAGGCCACGCCACTGTCTCAAGAGTGTGGCCTAGCCAAAACCAGACACCCCATCAGATGCTGATGTGCGGAAGCACATGGTCGAGTGGCTGCGCAGCCAGCCACAGATGTGCAGCATACATGCGCTCCTGCCAAGATAGGCAGCGCCGTGTGCCCACCCGCACACGGATGCCAATCATGTGTGCCAAGCACACAACCAAGGCACGCGCTTGTTGATAGGCCTATGCGTGCACCCCGCACATGTACGAGGTGTGCGCCCATTGACTGCTCTGCAAGCGCACCCCTCGCACAACCTATGCACACGTCTGTGCCACAGTGGGCACAACAGTCTTCAGATGCCCCTTGAAGGTCCTAAAACATTCTAGAAGACTTGGCTCAACAAAGACCTATGCGCGTCTGGAAGGATACGCAGCCTGCTAGGCAGTGCCAGCGCCTATGTCCTGGTGCCTAACAAGCCCGGATACCACCACAAGACACTAGAAGGGGCCTGGCTACTCGCCCACGCCCCACACATCCCCGGAAGCCTCTAGACAAACCTCGAAGGCGTCAGACTACTCGAGAAGAGGCTCGATGGTGTTGGTGCGTCTCAGAAGTGTCCCGATAGGTTTTGAAGGCTCACGACGTGCTAGAGAGTGCTAGAAGTGTTTGAACGGTTCAAGAAGCTTTAATGGTAGTCGGACACCTACCCAATTGTACTAGAAGAACCTAGTTGAGTCTAGAAGTCTCTAGGTTAGGTCTTATTTATATAGTTCTAGGCTTGTACATATGTAACCGACACTTGTACATAAAGAATAGCCTAGAAGGGTCCTTGACCGACATTGTAAGTTGGTCATGCTAGGGAATGTCAGCTAGGCACCCCTATAAATACCCGATGGGGCATCATTTGTACACACATCCGAGAATCAAGCAATCCAAGCGACATTCTTCAAGCTTGAGCGATTGTCTCCGGTTGGTGAAGCTCTCTAAGCTCTCATTCACTCAAACTCTTTTAAGTCCTCCTTGCCTAAACACTTCCTCACCATCTCACCTGATTGTGCCTAGGGGAGGAAGATCCTAGAGCCTCAAAAGGCTTACTTGGTGTGTCTTTTGACAGTAAGATCACCCAAGTGTCGCGCGGTTGGTTAGGTCGAAACACTAACCACGTGACAGGTGGTATCAGAGCCTTACTCCTCCATCCTAGATACCCACACACACTTGTATTGTCGATAGTGAGATCGGTGGCCACTGAGGAAGGACGAAGCTCATCGGTGGAGCGTGTGCAAGTTGAAGGACCGGTGACCCAAAGGAAACGGCAAGATGATGCCCGTCTTCCAACTTGGAAAAGGTGCAACTTGTTGTGGGTTGGTTGAGTGAATGATTTGAGGAGCTTGTCCAAGAAAGCACCGAGATCACGGTAGTTACCAAGGAGATGATCAAGGAGCTGGGATGGACAATAAGTAAAGAGGTAAGTACCCTCTTCGATGAAGTAGCCAAACTAAGGAAGTTCGTGGAGGGGGAGCTTCACGAGCTTCGTGGGAAAGTCCACAACACACGTAAGGAGTGTCAGGCAAACCATAGTGCTAATGGAGGCACATCCACCAGCACAACATCATCTATTGCCCATGCCACCTGTGGGGTAAAGGTGCCAAAGCCCTATACTTATGAAGGTACAAGAAGTGTCACGGTTGTGGAGAACTTCTTGTTCGGCCTAGAGCAATACTTTGAGGCCCTAGGCACGTCGTCGATGATGGCGCTAAGATTGCAAATGCTCCTAACTTCCTACGTGAGGCAGCCCAACTATGGTGGCGTAGAAAGCACGCTGAGCGTGAGCTGGACAGATGCAACATTCGAACGTGGGAATAAGTCAAGTCAGAACTTCTAAAGCATTTTGTTCCGCATAATGCCCACATGGAGGCATGAGGCAAATTGAGGCGATTAAGGCAAAGCAGTAGCATCCCCGAGTACATAAAAAAATTCACAATCCTCATGCTGGAAATTGAGGGTCTATCCGACAAAGATGCATTCTTTTATTTCCGCGATGGTCTTAAAGATTGGGCGAGGATTGAGCTCGATAGGCGGAATGTGCAGACGCTTGATGATGCCATAGCCGCTGTTGAGATGCTTACTGACTTCTCGGCCAAGGGAAAGACGACCAACAAATATGAAGGAGAAGTGTCGAAGTTCGAGGAATCTGATGCGCATATAAGATTGAAGGGAGCCATAGGAATGGAAGAAAGAATGGGAAGGCTGCCGACAAGAACAGAGGTAAGCCCTTTAAACATCCTTTCTTCCTTTGCGATGGCCCATATTGGACGAGGGAATGTCCAAAGAGGAAGTCGCTTAA

mRNA sequence

ATGGCCCAACAAATTGCGCCACAAACGCCTATAACTCGAGGAAAGGCCAAGACGTCCCCAAGCATAGCACACGCAAGTGCCAAGGCACCACACATGGTTGCCAAGGGTGCCAGGCCACGCCACTGTCTCAAGACACATGGTCGAGTGGCTGCGCAGCCAGCCACAGATGTGCAGCATACATGCGCTCCTGCCAAGATAGGCAGCGCCGTGTGCCCACCCGCACACGGATGCCAATCATGTGTGCCAAGCACACAACCAAGGCACGCGCTTGTTGATAGGCCTATGCGTGCACCCCGCACATGTACGAGGTGTGCGCCCATTGACTGCTCTGCAAGCGCACCCCTCGCACAACCTATGCACACGTCTGTGCCACAGTGGGCACAACAACCTATGCGCGTCTGGAAGGATACGCAGCCTGCTAGGCAGTGCCAGCGCCTATGTCCTGACACTAGAAGGGGCCTGGCTACTCGCCCACGCCCCACACATCCCCGGAAGCCTCTAGACAAACCTCGAAGGCGTCAGACTACTCGAGAAGAGGCTCGATGGTGTTGGTGCGTCTCAGAAGGAATGTCAGCTAGGCACCCCTATAAATACCCGATGGGGCATCATTTGTACACACATCCGAGAATCAAGCAATCCAAGCGACATTCTTCAAGCTTGAGCGATTGTCTCCGGTTGGAAGATCCTAGAGCCTCAAAAGGCTTACTTGGTGTGTCTTTTGACAGTAAGATCACCCAAGTGTCGCGCGGTTGGTTAGGTCGAAACACTAACCACGTGACAGGTGGTATCAGAGCCTTACTCCTCCATCCTAGATACCCACACACACTTGTATTGTCGATAGTGAGATCGGTGGCCACTGAGGAAGGACGAAGCTCATCGGTGGAGCGTGTGCAAGTTGAAGGACCGGTGACCCAAAGGAAACGGCAAGATGATGCCCGTCTTCCAACTTGGAAAAGCACCGAGATCACGGTAGTTACCAAGGAGATGATCAAGGAGCTGGGATGGACAATAAGTAAAGAGGTAAGTACCCTCTTCGATGAAGTAGCCAAACTAAGGAAGTTCGTGGAGGGGGAGCTTCACGAGCTTCGTGGGAAAGTCCACAACACACGTAAGGAGTGTCAGGCAAACCATAGTGCTAATGGAGGCACATCCACCAGCACAACATCATCTATTGCCCATGCCACCTGTGGGGTAAAGGTGCCAAAGCCCTATACTTATGAAGGTACAAGAAGTGTCACGGTTGTGGAGAACTTCTTGTTCGGCCTAGAGCAATACTTTGAGGCCCTAGGCACGTCGTCGATGATGGCGCTAAGATTGCAAATGCTCCTAACTTCCTACGTGAGGCAGCCCAACTATGGTGGCGTAGAAAGCACGCTGAGCGTGAGCTGGACAGATGCAACATTCGAACGTGGGAATAAGTCAAGCAAATTGAGGCGATTAAGGCAAAGCAGTAGCATCCCCGAGTACATAAAAAAATTCACAATCCTCATGCTGGAAATTGAGGGTCTATCCGACAAAGATGCATTCTTTTATTTCCGCGATGGTCTTAAAGATTGGGCGAGGATTGAGCTCGATAGGCGGAATGTGCAGACGCTTGATGATGCCATAGCCGCTGTTGAGATGCTTACTGACTTCTCGGCCAAGGGAAAGACGACCAACAAATATGAAGGAGAAGTGTCGAAGTTCGAGGAATCTGATGCGCATATAAGATTGAAGGGAGCCATAGGAATGGAAGAAAGAATGGGAAGGCTGCCGACAAGAACAGAGGGAATGTCCAAAGAGGAAGTCGCTTAA

Coding sequence (CDS)

ATGGCCCAACAAATTGCGCCACAAACGCCTATAACTCGAGGAAAGGCCAAGACGTCCCCAAGCATAGCACACGCAAGTGCCAAGGCACCACACATGGTTGCCAAGGGTGCCAGGCCACGCCACTGTCTCAAGACACATGGTCGAGTGGCTGCGCAGCCAGCCACAGATGTGCAGCATACATGCGCTCCTGCCAAGATAGGCAGCGCCGTGTGCCCACCCGCACACGGATGCCAATCATGTGTGCCAAGCACACAACCAAGGCACGCGCTTGTTGATAGGCCTATGCGTGCACCCCGCACATGTACGAGGTGTGCGCCCATTGACTGCTCTGCAAGCGCACCCCTCGCACAACCTATGCACACGTCTGTGCCACAGTGGGCACAACAACCTATGCGCGTCTGGAAGGATACGCAGCCTGCTAGGCAGTGCCAGCGCCTATGTCCTGACACTAGAAGGGGCCTGGCTACTCGCCCACGCCCCACACATCCCCGGAAGCCTCTAGACAAACCTCGAAGGCGTCAGACTACTCGAGAAGAGGCTCGATGGTGTTGGTGCGTCTCAGAAGGAATGTCAGCTAGGCACCCCTATAAATACCCGATGGGGCATCATTTGTACACACATCCGAGAATCAAGCAATCCAAGCGACATTCTTCAAGCTTGAGCGATTGTCTCCGGTTGGAAGATCCTAGAGCCTCAAAAGGCTTACTTGGTGTGTCTTTTGACAGTAAGATCACCCAAGTGTCGCGCGGTTGGTTAGGTCGAAACACTAACCACGTGACAGGTGGTATCAGAGCCTTACTCCTCCATCCTAGATACCCACACACACTTGTATTGTCGATAGTGAGATCGGTGGCCACTGAGGAAGGACGAAGCTCATCGGTGGAGCGTGTGCAAGTTGAAGGACCGGTGACCCAAAGGAAACGGCAAGATGATGCCCGTCTTCCAACTTGGAAAAGCACCGAGATCACGGTAGTTACCAAGGAGATGATCAAGGAGCTGGGATGGACAATAAGTAAAGAGGTAAGTACCCTCTTCGATGAAGTAGCCAAACTAAGGAAGTTCGTGGAGGGGGAGCTTCACGAGCTTCGTGGGAAAGTCCACAACACACGTAAGGAGTGTCAGGCAAACCATAGTGCTAATGGAGGCACATCCACCAGCACAACATCATCTATTGCCCATGCCACCTGTGGGGTAAAGGTGCCAAAGCCCTATACTTATGAAGGTACAAGAAGTGTCACGGTTGTGGAGAACTTCTTGTTCGGCCTAGAGCAATACTTTGAGGCCCTAGGCACGTCGTCGATGATGGCGCTAAGATTGCAAATGCTCCTAACTTCCTACGTGAGGCAGCCCAACTATGGTGGCGTAGAAAGCACGCTGAGCGTGAGCTGGACAGATGCAACATTCGAACGTGGGAATAAGTCAAGCAAATTGAGGCGATTAAGGCAAAGCAGTAGCATCCCCGAGTACATAAAAAAATTCACAATCCTCATGCTGGAAATTGAGGGTCTATCCGACAAAGATGCATTCTTTTATTTCCGCGATGGTCTTAAAGATTGGGCGAGGATTGAGCTCGATAGGCGGAATGTGCAGACGCTTGATGATGCCATAGCCGCTGTTGAGATGCTTACTGACTTCTCGGCCAAGGGAAAGACGACCAACAAATATGAAGGAGAAGTGTCGAAGTTCGAGGAATCTGATGCGCATATAAGATTGAAGGGAGCCATAGGAATGGAAGAAAGAATGGGAAGGCTGCCGACAAGAACAGAGGGAATGTCCAAAGAGGAAGTCGCTTAA

Protein sequence

MAQQIAPQTPITRGKAKTSPSIAHASAKAPHMVAKGARPRHCLKTHGRVAAQPATDVQHTCAPAKIGSAVCPPAHGCQSCVPSTQPRHALVDRPMRAPRTCTRCAPIDCSASAPLAQPMHTSVPQWAQQPMRVWKDTQPARQCQRLCPDTRRGLATRPRPTHPRKPLDKPRRRQTTREEARWCWCVSEGMSARHPYKYPMGHHLYTHPRIKQSKRHSSSLSDCLRLEDPRASKGLLGVSFDSKITQVSRGWLGRNTNHVTGGIRALLLHPRYPHTLVLSIVRSVATEEGRSSSVERVQVEGPVTQRKRQDDARLPTWKSTEITVVTKEMIKELGWTISKEVSTLFDEVAKLRKFVEGELHELRGKVHNTRKECQANHSANGGTSTSTTSSIAHATCGVKVPKPYTYEGTRSVTVVENFLFGLEQYFEALGTSSMMALRLQMLLTSYVRQPNYGGVESTLSVSWTDATFERGNKSSKLRRLRQSSSIPEYIKKFTILMLEIEGLSDKDAFFYFRDGLKDWARIELDRRNVQTLDDAIAAVEMLTDFSAKGKTTNKYEGEVSKFEESDAHIRLKGAIGMEERMGRLPTRTEGMSKEEVA

Homology

[Close]

BLAST of ClCG02G006140 vs. NCBI nr
Match: KAA0035960.1 (uncharacterized protein E6C27_scaffold56G001640 [Cucumis melo var. makuwa] >TYK30443.1 uncharacterized protein E5676_scaffold349G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 207.6 bits (527), Expect = 3.0e-49
Identity = 134/284 (47.18%), Postives = 169/284 (59.51%), Query Frame = 0


Query: 319 STEITVVTKEMIKELGWTISKEVSTLFDEVAKLRKFVEGELHELRGKVHNTRKECQANHS 378
           + EI+   KEMIK+LG +  KE+  L  EV  LRKFVE ELH LR  V   R EC + H+
Sbjct: 12  NVEISNAAKEMIKDLGDSHGKEMYDLLVEVTNLRKFVEEELHALRKNVDEVRAECHSRHA 71

Query: 379 ANGGTSTSTTSSIAHATCGVKVPKPYTYEGTRSVTVVENFLFGLEQYFEALG---TSSMM 438
           +NG  STST+ ++   T  +KVPKP  Y GTR+ T+VENFLFGLEQY++ALG     + +
Sbjct: 72  SNGNASTSTSCTVV-GTHNIKVPKPDMYNGTRNATMVENFLFGLEQYYKALGIVDDGAKI 131

Query: 439 ALRLQMLLTS----YVRQPNYGGVESTLSVSWTDATFE----------RGNKSSKLRRLR 498
           A     L  S    + R+      + T+  +W     E                KLRRLR
Sbjct: 132 ANAPNFLHESAQLWWHRKHAEWEKDRTILHTWRQFKAELRKHFVLHNANMEARGKLRRLR 191

Query: 499 QSSSIPEYIKKFTILMLEIEGLSDKDAFFYFRDGLKDWARIELDRRNVQTLDDAIAAVEM 558
           Q  SIP+YIK+FT LMLEIE LSDKDA F+FRDGLKDWA+IELDRRNV+TLDDAIAA + 
Sbjct: 192 QIGSIPDYIKEFTTLMLEIEDLSDKDALFHFRDGLKDWAKIELDRRNVRTLDDAIAAAKA 251

Query: 559 LTDFSAKGKTTNKYEGEVSKFEESDAHIRLKGAIGMEERMGRLP 586
           L D   K K T   EGE   FE  + + +       +E+ G+ P
Sbjct: 252 LIDIYFKEKKTRVDEGEA--FEPKEWNSK------QDEKYGKTP 286

[Close]

BLAST of ClCG02G006140 vs. NCBI nr
Match: KAA0035961.1 (uncharacterized protein E6C27_scaffold56G001660 [Cucumis melo var. makuwa] >TYK30442.1 uncharacterized protein E5676_scaffold349G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 2.3e-46
Identity = 126/257 (49.03%), Postives = 155/257 (60.31%), Query Frame = 0


Query: 319 STEITVVTKEMIKELGWTISKEVSTLFDEVAKLRKFVEGELHELRGKVHNTRKECQANHS 378
           + EI+   KEMIK LG +  KE+  +  EV  LRKFVE ELH LR  V   R E  + H+
Sbjct: 12  NVEISNAAKEMIKVLGDSHGKEMYDILVEVTNLRKFVEEELHALRKNVDEVRAEWHSRHA 71

Query: 379 ANGGTSTSTTSSIAHATCGVKVPKPYTYEGTRSVTVVENFLFGLEQYFEALG---TSSMM 438
           +NG  STST+ ++   T  +KVPKP TY GTR+ T+VENFLFGLEQY++ALG     + +
Sbjct: 72  SNGNASTSTSCTMV-GTHNIKVPKPDTYNGTRNATMVENFLFGLEQYYKALGIIDDGAKI 131

Query: 439 ALRLQMLLTS----YVRQPNYGGVESTLSVSWTDATFERG----------NKSSKLRRLR 498
           A     L  S    + R+      + T+  +W     E                KLRRLR
Sbjct: 132 ANAPNFLRESAQLWWRRKHAEWEKDRTILQTWEQFKAELRKHFVPHNADMEARGKLRRLR 191

Query: 499 QSSSIPEYIKKFTILMLEIEGLSDKDAFFYFRDGLKDWARIELDRRNVQTLDDAIAAVEM 558
           Q  SIP+YIK+FT LMLEIE LSDKDA F+FRD LKDWA+IELDRRNV+TLDDAIAA   
Sbjct: 192 QIGSIPDYIKEFTTLMLEIEDLSDKDALFHFRDDLKDWAKIELDRRNVRTLDDAIAAAGA 251

[Close]

BLAST of ClCG02G006140 vs. NCBI nr
Match: KAA0042140.1 (uncharacterized protein E6C27_scaffold67G006290 [Cucumis melo var. makuwa])

HSP 1 Score: 179.5 bits (454), Expect = 8.6e-41
Identity = 141/364 (38.74%), Postives = 182/364 (50.00%), Query Frame = 0


Query: 255 NTNHVTGGIRALL---LHPRYPHTLVLSIVRSVATEEGRSSSVERVQVEGPVTQ-RKRQD 314
           ++N   GGI   L     PR+   +   +   ++ EEG +S VE+V +EGPVT+ RK+Q 
Sbjct: 122 HSNDPCGGIDTKLKSVSKPRFKTEVRCVLASIMSAEEGHTSPVEQV-IEGPVTRGRKKQH 181

Query: 315 -----------------DARLP-----------------------TWKSTEITVVTKEMI 374
                            D RL                          ++ EIT V KEMI
Sbjct: 182 SPTRRSKSKGPTVREHVDTRLTNLEKGMEDVQLAVGRLSENFEELVQENAEITSVAKEMI 241

Query: 375 KELGWTISKEVSTLFDEVAKLRKFVEGELHELRGK--VHNTR-----KECQANHSANGGT 434
           +++G T  KE+  L   V  L+ FVEGELH+L  K     TR      EC + H  +   
Sbjct: 242 EDMGRTFQKELKELASTVTTLKAFVEGELHDLHTKSISFETRLDALCVECHSKHLGSNAP 301

Query: 435 STSTTSSIAHATCGVKVPKPYTYEGTRSVTVVENFLFGLEQYFEALGTSSMMALRLQMLL 494
           STST  + +  T  +KVPKP  Y G R+ TVV+NFLFGLE+YF ALG     A R+    
Sbjct: 302 STSTHPTTS-GTSNIKVPKPDVYNGVRNATVVDNFLFGLERYFVALGVRDDEA-RINHAP 361

Query: 495 TSYVR-------QPNYGGVESTLSVSWTDATFE----------RGNKSSKLRRLRQSSSI 551
           T ++R       +  Y         SW     E                KLR LR   SI
Sbjct: 362 T-FLRDVAQLWWRHKYADQSGNAIHSWEQFKTELRKHFVPHNAEIESRGKLRHLRHIGSI 421

[Close]

BLAST of ClCG02G006140 vs. NCBI nr
Match: TYK18079.1 (uncharacterized protein E5676_scaffold306G004150 [Cucumis melo var. makuwa])

HSP 1 Score: 179.5 bits (454), Expect = 8.6e-41
Identity = 141/364 (38.74%), Postives = 182/364 (50.00%), Query Frame = 0


Query: 255 NTNHVTGGIRALL---LHPRYPHTLVLSIVRSVATEEGRSSSVERVQVEGPVTQ-RKRQD 314
           ++N   GGI   L     PR+   +   +   ++ EEG +S VE+V +EGPVT+ RK+Q 
Sbjct: 59  HSNDPCGGIDTKLKSVSKPRFKTEVRCVLASIMSAEEGHTSPVEQV-IEGPVTRGRKKQH 118

Query: 315 -----------------DARLP-----------------------TWKSTEITVVTKEMI 374
                            D RL                          ++ EIT V KEMI
Sbjct: 119 SPTRRSKSKGPTVREHVDTRLTNLEKGMEDVQLAVGRLSENFEELVQENAEITSVAKEMI 178

Query: 375 KELGWTISKEVSTLFDEVAKLRKFVEGELHELRGK--VHNTR-----KECQANHSANGGT 434
           +++G T  KE+  L   V  L+ FVEGELH+L  K     TR      EC + H  +   
Sbjct: 179 EDMGRTFQKELKELASTVTTLKAFVEGELHDLHTKSISFETRLDALCVECHSKHLGSNAP 238

Query: 435 STSTTSSIAHATCGVKVPKPYTYEGTRSVTVVENFLFGLEQYFEALGTSSMMALRLQMLL 494
           STST  + +  T  +KVPKP  Y G R+ TVV+NFLFGLE+YF ALG     A R+    
Sbjct: 239 STSTHPTTS-GTSNIKVPKPDVYNGVRNATVVDNFLFGLERYFVALGVRDDEA-RINHAP 298

Query: 495 TSYVR-------QPNYGGVESTLSVSWTDATFE----------RGNKSSKLRRLRQSSSI 551
           T ++R       +  Y         SW     E                KLR LR   SI
Sbjct: 299 T-FLRDVAQLWWRHKYADQSGNAIHSWEQFKTELRKHFVPHNAEIESRGKLRHLRHIGSI 358

[Close]

BLAST of ClCG02G006140 vs. NCBI nr
Match: KAA0065760.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 178.7 bits (452), Expect = 1.5e-40
Identity = 136/347 (39.19%), Postives = 176/347 (50.72%), Query Frame = 0


Query: 284 VATEEGRSSSVERVQVEGPVTQRKRQD------------------DARLP---------- 343
           ++ EEG +S VE+V +EGPVT+ +++                   D RL           
Sbjct: 1   MSAEEGHTSPVEQV-IEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQ 60

Query: 344 -------------TWKSTEITVVTKEMIKELGWTISKEVSTLFDEVAKLRKFVEGELHEL 403
                          ++ EIT V KEMI+++G T  +E+  L   V  L+ FVEGELH L
Sbjct: 61  LAVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQEELKELTSTVTTLKAFVEGELHNL 120

Query: 404 RGK--VHNTR-----KECQANHSANGGTSTSTTSSIAHATCGVKVPKPYTYEGTRSVTVV 463
             K     TR      EC++ H  +   STST  + +  T  +KVPKP  Y G R+ TVV
Sbjct: 121 HTKSISFETRLDALCVECRSKHLGSNAPSTSTHPTTS-GTSNIKVPKPDVYNGVRNATVV 180

Query: 464 ENFLFGLEQYFEALGTSSMMALRLQMLLTSYVR-------QPNYGGVESTLSVSWTDATF 523
           +NFLFGLE+YF ALG     A R+    T ++R       +  Y         SW     
Sbjct: 181 DNFLFGLERYFVALGVRDDEA-RINHAPT-FLRDAAQLWWRRKYADQSGNAIHSWEQFKA 240

Query: 524 E----------RGNKSSKLRRLRQSSSIPEYIKKFTILMLEIEGLSDKDAFFYFRDGLKD 562
           E                KLRRLR + SI EY+K+FT LMLEI  L +K+A F F+DGLKD
Sbjct: 241 ELRKHFVPHNAEIESRGKLRRLRHTGSILEYVKEFTTLMLEIGDLPEKEALFQFKDGLKD 300

[Close]

BLAST of ClCG02G006140 vs. ExPASy TrEMBL
Match: A0A5A7SY30 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00560 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.4e-49
Identity = 134/284 (47.18%), Postives = 169/284 (59.51%), Query Frame = 0


Query: 319 STEITVVTKEMIKELGWTISKEVSTLFDEVAKLRKFVEGELHELRGKVHNTRKECQANHS 378
           + EI+   KEMIK+LG +  KE+  L  EV  LRKFVE ELH LR  V   R EC + H+
Sbjct: 12  NVEISNAAKEMIKDLGDSHGKEMYDLLVEVTNLRKFVEEELHALRKNVDEVRAECHSRHA 71

Query: 379 ANGGTSTSTTSSIAHATCGVKVPKPYTYEGTRSVTVVENFLFGLEQYFEALG---TSSMM 438
           +NG  STST+ ++   T  +KVPKP  Y GTR+ T+VENFLFGLEQY++ALG     + +
Sbjct: 72  SNGNASTSTSCTVV-GTHNIKVPKPDMYNGTRNATMVENFLFGLEQYYKALGIVDDGAKI 131

Query: 439 ALRLQMLLTS----YVRQPNYGGVESTLSVSWTDATFE----------RGNKSSKLRRLR 498
           A     L  S    + R+      + T+  +W     E                KLRRLR
Sbjct: 132 ANAPNFLHESAQLWWHRKHAEWEKDRTILHTWRQFKAELRKHFVLHNANMEARGKLRRLR 191

Query: 499 QSSSIPEYIKKFTILMLEIEGLSDKDAFFYFRDGLKDWARIELDRRNVQTLDDAIAAVEM 558
           Q  SIP+YIK+FT LMLEIE LSDKDA F+FRDGLKDWA+IELDRRNV+TLDDAIAA + 
Sbjct: 192 QIGSIPDYIKEFTTLMLEIEDLSDKDALFHFRDGLKDWAKIELDRRNVRTLDDAIAAAKA 251

Query: 559 LTDFSAKGKTTNKYEGEVSKFEESDAHIRLKGAIGMEERMGRLP 586
           L D   K K T   EGE   FE  + + +       +E+ G+ P
Sbjct: 252 LIDIYFKEKKTRVDEGEA--FEPKEWNSK------QDEKYGKTP 286

[Close]

BLAST of ClCG02G006140 vs. ExPASy TrEMBL
Match: A0A5A7T2W8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00550 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.1e-46
Identity = 126/257 (49.03%), Postives = 155/257 (60.31%), Query Frame = 0


Query: 319 STEITVVTKEMIKELGWTISKEVSTLFDEVAKLRKFVEGELHELRGKVHNTRKECQANHS 378
           + EI+   KEMIK LG +  KE+  +  EV  LRKFVE ELH LR  V   R E  + H+
Sbjct: 12  NVEISNAAKEMIKVLGDSHGKEMYDILVEVTNLRKFVEEELHALRKNVDEVRAEWHSRHA 71

Query: 379 ANGGTSTSTTSSIAHATCGVKVPKPYTYEGTRSVTVVENFLFGLEQYFEALG---TSSMM 438
           +NG  STST+ ++   T  +KVPKP TY GTR+ T+VENFLFGLEQY++ALG     + +
Sbjct: 72  SNGNASTSTSCTMV-GTHNIKVPKPDTYNGTRNATMVENFLFGLEQYYKALGIIDDGAKI 131

Query: 439 ALRLQMLLTS----YVRQPNYGGVESTLSVSWTDATFERG----------NKSSKLRRLR 498
           A     L  S    + R+      + T+  +W     E                KLRRLR
Sbjct: 132 ANAPNFLRESAQLWWRRKHAEWEKDRTILQTWEQFKAELRKHFVPHNADMEARGKLRRLR 191

Query: 499 QSSSIPEYIKKFTILMLEIEGLSDKDAFFYFRDGLKDWARIELDRRNVQTLDDAIAAVEM 558
           Q  SIP+YIK+FT LMLEIE LSDKDA F+FRD LKDWA+IELDRRNV+TLDDAIAA   
Sbjct: 192 QIGSIPDYIKEFTTLMLEIEDLSDKDALFHFRDDLKDWAKIELDRRNVRTLDDAIAAAGA 251

[Close]

BLAST of ClCG02G006140 vs. ExPASy TrEMBL
Match: A0A5D3D3V4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G004150 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.2e-41
Identity = 141/364 (38.74%), Postives = 182/364 (50.00%), Query Frame = 0


Query: 255 NTNHVTGGIRALL---LHPRYPHTLVLSIVRSVATEEGRSSSVERVQVEGPVTQ-RKRQD 314
           ++N   GGI   L     PR+   +   +   ++ EEG +S VE+V +EGPVT+ RK+Q 
Sbjct: 59  HSNDPCGGIDTKLKSVSKPRFKTEVRCVLASIMSAEEGHTSPVEQV-IEGPVTRGRKKQH 118

Query: 315 -----------------DARLP-----------------------TWKSTEITVVTKEMI 374
                            D RL                          ++ EIT V KEMI
Sbjct: 119 SPTRRSKSKGPTVREHVDTRLTNLEKGMEDVQLAVGRLSENFEELVQENAEITSVAKEMI 178

Query: 375 KELGWTISKEVSTLFDEVAKLRKFVEGELHELRGK--VHNTR-----KECQANHSANGGT 434
           +++G T  KE+  L   V  L+ FVEGELH+L  K     TR      EC + H  +   
Sbjct: 179 EDMGRTFQKELKELASTVTTLKAFVEGELHDLHTKSISFETRLDALCVECHSKHLGSNAP 238

Query: 435 STSTTSSIAHATCGVKVPKPYTYEGTRSVTVVENFLFGLEQYFEALGTSSMMALRLQMLL 494
           STST  + +  T  +KVPKP  Y G R+ TVV+NFLFGLE+YF ALG     A R+    
Sbjct: 239 STSTHPTTS-GTSNIKVPKPDVYNGVRNATVVDNFLFGLERYFVALGVRDDEA-RINHAP 298

Query: 495 TSYVR-------QPNYGGVESTLSVSWTDATFE----------RGNKSSKLRRLRQSSSI 551
           T ++R       +  Y         SW     E                KLR LR   SI
Sbjct: 299 T-FLRDVAQLWWRHKYADQSGNAIHSWEQFKTELRKHFVPHNAEIESRGKLRHLRHIGSI 358

[Close]

BLAST of ClCG02G006140 vs. ExPASy TrEMBL
Match: A0A5A7TFP3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006290 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.2e-41
Identity = 141/364 (38.74%), Postives = 182/364 (50.00%), Query Frame = 0


Query: 255 NTNHVTGGIRALL---LHPRYPHTLVLSIVRSVATEEGRSSSVERVQVEGPVTQ-RKRQD 314
           ++N   GGI   L     PR+   +   +   ++ EEG +S VE+V +EGPVT+ RK+Q 
Sbjct: 122 HSNDPCGGIDTKLKSVSKPRFKTEVRCVLASIMSAEEGHTSPVEQV-IEGPVTRGRKKQH 181

Query: 315 -----------------DARLP-----------------------TWKSTEITVVTKEMI 374
                            D RL                          ++ EIT V KEMI
Sbjct: 182 SPTRRSKSKGPTVREHVDTRLTNLEKGMEDVQLAVGRLSENFEELVQENAEITSVAKEMI 241

Query: 375 KELGWTISKEVSTLFDEVAKLRKFVEGELHELRGK--VHNTR-----KECQANHSANGGT 434
           +++G T  KE+  L   V  L+ FVEGELH+L  K     TR      EC + H  +   
Sbjct: 242 EDMGRTFQKELKELASTVTTLKAFVEGELHDLHTKSISFETRLDALCVECHSKHLGSNAP 301

Query: 435 STSTTSSIAHATCGVKVPKPYTYEGTRSVTVVENFLFGLEQYFEALGTSSMMALRLQMLL 494
           STST  + +  T  +KVPKP  Y G R+ TVV+NFLFGLE+YF ALG     A R+    
Sbjct: 302 STSTHPTTS-GTSNIKVPKPDVYNGVRNATVVDNFLFGLERYFVALGVRDDEA-RINHAP 361

Query: 495 TSYVR-------QPNYGGVESTLSVSWTDATFE----------RGNKSSKLRRLRQSSSI 551
           T ++R       +  Y         SW     E                KLR LR   SI
Sbjct: 362 T-FLRDVAQLWWRHKYADQSGNAIHSWEQFKTELRKHFVPHNAEIESRGKLRHLRHIGSI 421

[Close]

BLAST of ClCG02G006140 vs. ExPASy TrEMBL
Match: A0A5A7VEX8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 7.1e-41
Identity = 136/347 (39.19%), Postives = 176/347 (50.72%), Query Frame = 0


Query: 284 VATEEGRSSSVERVQVEGPVTQRKRQD------------------DARLP---------- 343
           ++ EEG +S VE+V +EGPVT+ +++                   D RL           
Sbjct: 1   MSAEEGHTSPVEQV-IEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQ 60

Query: 344 -------------TWKSTEITVVTKEMIKELGWTISKEVSTLFDEVAKLRKFVEGELHEL 403
                          ++ EIT V KEMI+++G T  +E+  L   V  L+ FVEGELH L
Sbjct: 61  LAVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQEELKELTSTVTTLKAFVEGELHNL 120

Query: 404 RGK--VHNTR-----KECQANHSANGGTSTSTTSSIAHATCGVKVPKPYTYEGTRSVTVV 463
             K     TR      EC++ H  +   STST  + +  T  +KVPKP  Y G R+ TVV
Sbjct: 121 HTKSISFETRLDALCVECRSKHLGSNAPSTSTHPTTS-GTSNIKVPKPDVYNGVRNATVV 180

Query: 464 ENFLFGLEQYFEALGTSSMMALRLQMLLTSYVR-------QPNYGGVESTLSVSWTDATF 523
           +NFLFGLE+YF ALG     A R+    T ++R       +  Y         SW     
Sbjct: 181 DNFLFGLERYFVALGVRDDEA-RINHAPT-FLRDAAQLWWRRKYADQSGNAIHSWEQFKA 240

Query: 524 E----------RGNKSSKLRRLRQSSSIPEYIKKFTILMLEIEGLSDKDAFFYFRDGLKD 562
           E                KLRRLR + SI EY+K+FT LMLEI  L +K+A F F+DGLKD
Sbjct: 241 ELRKHFVPHNAEIESRGKLRRLRHTGSILEYVKEFTTLMLEIGDLPEKEALFQFKDGLKD 300

The following BLAST results are available for this feature:

BLAST of ClCG02G006140 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035960.1	3.0e-49	47.18	uncharacterized protein E6C27_scaffold56G001640 [Cucumis melo var. makuwa] >TYK3...	[more]
KAA0035961.1	2.3e-46	49.03	uncharacterized protein E6C27_scaffold56G001660 [Cucumis melo var. makuwa] >TYK3...	[more]
KAA0042140.1	8.6e-41	38.74	uncharacterized protein E6C27_scaffold67G006290 [Cucumis melo var. makuwa]	[more]
TYK18079.1	8.6e-41	38.74	uncharacterized protein E5676_scaffold306G004150 [Cucumis melo var. makuwa]	[more]
KAA0065760.1	1.5e-40	39.19	polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of ClCG02G006140 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG02G006140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SY30	1.4e-49	47.18	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7T2W8	1.1e-46	49.03	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3D3V4	4.2e-41	38.74	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TFP3	4.2e-41	38.74	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7VEX8	7.1e-41	39.19	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=...	[more]

BLAST of ClCG02G006140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 292..312
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..174
None	No IPR available	PANTHER	PTHR34482:SF18	RETROTRANSPOSON GAG DOMAIN, ASPARTIC PEPTIDASE DOMAIN PROTEIN-RELATED	coord: 475..553
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 475..553

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G006140.1	ClCG02G006140.1	mRNA