ClCG02G006040 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G006040
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Plant transposase
Location	CG_Chr02: 6685699 .. 6689394 (-)
RNA-Seq Expression	ClCG02G006040
Synteny	ClCG02G006040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCATTCGGGTAGTATAGTTGAAGATACAATTAGTAGAGTTTTGGGTTTCGACCATGGCCACATACGAGGATTAGGATTTGGGGTGACTAAATCGAAGTTGTCTACATCAACTCAAAAAGATAAAACTATTGCATCTCTTAAAAGCAAATGCAACAACCTAACGTCAGATGTAGATGATCTGAAAAATGTGGTAGCTTCCTTATTAAAGGACAAGGTAAACTTGACTTAACTCTCTTTATCTTTTTAAAACTATTGTATTTTATACACTATTTTTAATATGTTGAATATATAGGAACAAATGAGCGAACAAAATTCTAATAATCTTGCTAAAGTATAGTCACCGATAGATGTTCCAACTCCAATCTTAAGTTCTCTACCAGTAAATTTATTTATCACACTTTATATAAGTTTTCTATTCATGTAGTTTTCAAAATTATTATTGTTTGACATTTTCTTTTAAAAAAATAATTATTGGTGAAAAAGAGTGTCATAGCCAATTCTCGCCAAAAGTGTTTTCTGCTAGATTGGTTTGGTTCTGCTGAAGGAAGATGGTCTTCCAATGATCCATCAATACTGGTCCATCACATACCTCTTAGCCCAAAAGTCGTTCATTTGTGGGTTGATACAGTAAAATACTTAATTCCTTCTTATGGAGTCCTACATATGACATTGTTTTTATTGATGATGCTATAGGCACTATGATTACATGGCCAATGGATGTCAAACTATGTAAGAAAAATTATTTAATAGTTGTGAATTAAGTATTTATTAAGTTGATTGACTAATCTATTGTTGGACTTAGATGATTTATAAAAGCTATTTTTATTTTATTTTTTTATTAGGTGATTGAAATGATGACAAACATTGGAACTATATATATCTATGGGAGAATGTTAGTATCGCTGTCATTTAAACATCCCTTTTAATTGTATCAACTTTGTTGGGATTATATGTGTACTCATTTTATTTGGATTAAGAATTTGCAGCTTGTTATTTAAGTAAGATGAACTTTGTTAGAACATACTTTTGACGACTATATCAACCTTTCGGATTAATGTAGTGCTTTATTTATTTATTTATTTTGTATGCTGGAAATTTGAAGATTTTGTTTATATAATTATGATTGTAGATGTGAATGAGATGGGAATTAATCTTTCTTCGTCTAGATAATAATATGAGCAAGCGACTTAATAAATGTATGTATGTTTATAATTTGAATTTTTATTGATGTAAATGTATTTAAATATAATGTCATTAAAAAGTGCTATTAAAGGTCAATTATGACGTTTTTTTTTCTACTGCTACAAAAAATACTATAGGAAGTTGTGGAGAAGAAATTTTGACCAATTTAAAAGTGCTACGTCCTCATGACCAAAGTCAACTATATCAAATTTTGGGTCAATTAAAGATTATTGTGTCCTTAAAATTGAAGTTTGAAGACAAACAAATGGCCTAGAAAATGCCACCTGTCTTCAATCTGGCCATTAGATCACAATAGCGGGCTTATCAACTTCAACAATGATTAAACTTGGTCTGTGATTGATAAAATCGGCCAAAATTTTGTTTGAGCTTTAAATCACAAATTGGATTAGGCTAGGTAATTAAAATTACTTGGGTCCAAAATCTAATCCATTTGAAGCCCGCGGTGGAAAATTTTGGCTAAAGAAAAAATTAGGTCCAAGCCCAACTTTAGCCCAAACCTAAAAGCAGTTGGGCCCAGGCCAAAAGCAAATGGGCCCAAGCCATGAAAATCCTCTATAAATAGAGGATCTTCCTCCTCATTTGGGCAGGTTGGAAAATTTAGTAACAAAGTGCTGAATCTCAGGAAACCAAAGTTCTGAAGAATTGAAGATTGAAGCTTTAAATATCTCAAGACTGAAACTCACAAGCTCACAAGCTCTGAAGATTGAAGCCCCAAAGTTTCAAAGAACTGAAGATCGAGTTCCTAAGCACTGAAGTTCTAGAGACTTGAAAATCAAAGTCTTTGAAGTTGAAGTCTCAAAGAAGATTTGGAATACTCAAGTTGCTTGTAACTTTTTTTTTAAGAGAAAGAATCAAAGGACCAAATACTAGAGATAGTACCCACAAATACTGAAATTAATACAAATACAAAGTTCAAATTCCACGAACGAAATTTATTCGAAAATCTAGTTGAACAAAAGTTTCTATAACATTAAAATTGTAACAACTCGAGTTTAGGAGGGGGACATGAATGAACCAAGATCATATCCGAATGAGAGGGATCCTGAAGATATGAAAGTATGGTTAAAAGAGGCTTAAAAGAATTGGGTTAAAAAAGGCTTAAAAGAATTGAAAGTTACTATCTATACCAACAAGGTGCACTTTCCTTTTCGGTGGCTCCATAGTTAAGCGTGCTTAGTTTGAAGCAATTCTATGTTGGATGACCTCCTAGGAATTTTCCTCCTCATGTGAGTGATGACAAAGCATGTTGAAAGTACCCGTGTTGGTTTGTGGGGATAGTATTCACTCTTAGAAGCAATTTAAGACAAGCAAGGATGATGTCACTACGTCGCAGGGGAATGTCAAAGCCATCAGTTGCCTAATCTGGATTCTGAATCCTAATCCTGGGGCGTTACAAAAATTATGCAATATAAAATGGGTTATTTATAACTTTTTTTTTTATTACTGAAAAAAAAATGCTATTAAAAGTTAGAGACTTTCAATAACATGCCTAAAAATACTATAGAAAGCCTTTTATACCAATTTTTTTTATTGCTATAAAAATTTTTAATAGCATTTTTTTCAACACTAAATTAAAATTATTGAATATCAATTTTCTATTGCATTATTTATAGCCATACAAAAAAAACTAAGGAAAGTTGAGGGGTTTCGATAATATCAACTACAACAGTAGCTTTTTTTAAAACACTATGGAAATGTTTTATAGTATTTTTATGACGTTGTTAAAAAGCTATTAAATGTCTGTAGCTTTTATAGTGTTTTTGTGTCGCTATAAAAAACTCTATAAAAGATTTTCTGTAGTATTTATTTCTCATGCTATGAAAAGTTTTTGTAGCATTAAATTTGCGCTATCGAAATTAGGTTTTTTTTTAATGATTTTTATAGCAAAGAAAAAATGTTATGGAAATTTGAAGACTTTCAATAACATAGACCGACAACATTGTTGAGAATGACTTTGGGCTTTTGACTCGTAGCAAAAGTAAAAAGGTAATTTTGTGAGGAAAGAGATAGAAGTTGTTCCACATTGGAAGATTTAGTCTTGGCAAGTGGTTATATATATAAATGCTTGCAAGGAGCTTCTAAATTGTGATGGTGGAAGTATAACTTTTTTGCCACATGCGTGCTTCGGAACGGGCAGGTTTGCGTAATTGCGCTTGCACGAAAAGGAAATAAATTTTTAATACCTATCCGTTTTAATTTTTATAAAAAAGATGACCTTTTTATTACCATTAAACATTTTATTCACGAAAATAATTGTTGGATCTAAATTAATTCCAAAAAAAATATTTTTATACTTCCTTCTGAAAGAGTTTTTGTCTATCTTTGTAATACACAGAAAATCCTAGCCATTTTGATCTTTTCTGTTTTTCATTTGCTTTACGGATTCTAAGCTGCTTTTTCGATTGATTCCAATCTATTCTCCGACGAGTGCACATCTGAGTTTGGGTGTTGTGTGAACCTTGAGGAGCAACCGGCTTCTTGCATATAG

mRNA sequence

ATGTCTCATTCGGGTAGTATAGTTGAAGATACAATTAGTAGAGTTTTGGGTTTCGACCATGGCCACATACGAGGATTAGGATTTGGGGTGACTAAATCGAAGTTGTCTACATCAACTCAAAAAGATAAAACTATTGCATCTCTTAAAAGCAAATGCAACAACCTAACGTCAGATGTAGATGATCTGAAAAATGTGGTAGCTTCCTTATTAAAGGACAAGATTGAAGCTTTAAATATCTCAAGACTGAAACTCACAAGCTCACAAGCTCTGAAGATTGAAGCCCCAAATTCTAGAGACTTGAAAATCAAAGTCTTTGAAGTTGAAGTCTCAAAGAAGATTTGGAATACTCAAGAGGGGGACATGAATGAACCAAGATCATATCCGAATGAGAGGGATCCTGAAGATATGAAAAAGCAATTTAAGACAAGCAAGGATGATGTCACTACGTCGCAGGGGAATGTCAAAGCCATCAGTTGCCTAATCTGGATTCTGAATCCTAATCCTGGGGCGTTACAAAAATTATGCAATATAAAATGGGTTTGCGTAATTGCGCTTGCACGAAAAGGAAATAAATTTTTAATACCTATCCCTGCTTTTTCGATTGATTCCAATCTATTCTCCGACGAGTGCACATCTGAGTTTGGGTGTTGTGTGAACCTTGAGGAGCAACCGGCTTCTTGCATATAG

Coding sequence (CDS)

ATGTCTCATTCGGGTAGTATAGTTGAAGATACAATTAGTAGAGTTTTGGGTTTCGACCATGGCCACATACGAGGATTAGGATTTGGGGTGACTAAATCGAAGTTGTCTACATCAACTCAAAAAGATAAAACTATTGCATCTCTTAAAAGCAAATGCAACAACCTAACGTCAGATGTAGATGATCTGAAAAATGTGGTAGCTTCCTTATTAAAGGACAAGATTGAAGCTTTAAATATCTCAAGACTGAAACTCACAAGCTCACAAGCTCTGAAGATTGAAGCCCCAAATTCTAGAGACTTGAAAATCAAAGTCTTTGAAGTTGAAGTCTCAAAGAAGATTTGGAATACTCAAGAGGGGGACATGAATGAACCAAGATCATATCCGAATGAGAGGGATCCTGAAGATATGAAAAAGCAATTTAAGACAAGCAAGGATGATGTCACTACGTCGCAGGGGAATGTCAAAGCCATCAGTTGCCTAATCTGGATTCTGAATCCTAATCCTGGGGCGTTACAAAAATTATGCAATATAAAATGGGTTTGCGTAATTGCGCTTGCACGAAAAGGAAATAAATTTTTAATACCTATCCCTGCTTTTTCGATTGATTCCAATCTATTCTCCGACGAGTGCACATCTGAGTTTGGGTGTTGTGTGAACCTTGAGGAGCAACCGGCTTCTTGCATATAG

Protein sequence

MSHSGSIVEDTISRVLGFDHGHIRGLGFGVTKSKLSTSTQKDKTIASLKSKCNNLTSDVDDLKNVVASLLKDKIEALNISRLKLTSSQALKIEAPNSRDLKIKVFEVEVSKKIWNTQEGDMNEPRSYPNERDPEDMKKQFKTSKDDVTTSQGNVKAISCLIWILNPNPGALQKLCNIKWVCVIALARKGNKFLIPIPAFSIDSNLFSDECTSEFGCCVNLEEQPASCI

Homology

[Close]

BLAST of ClCG02G006040 vs. NCBI nr
Match: XP_038900033.1 (uncharacterized protein LOC120087197 [Benincasa hispida])

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-18
Identity = 51/72 (70.83%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 2  SHSGSIVEDTISRVLGFDHGHIRGLGFGVTKSKLSTSTQKDKTIASLKSKCNNLTSDVDD 61
          S S SI++D ISRV G +H H+RGLGFGVT SKLSTSTQKD+TIASL+ KCNNLT+DVD+
Sbjct: 13 SRSNSIIDDAISRVFGTNHDHVRGLGFGVTLSKLSTSTQKDETIASLERKCNNLTTDVDE 72

Query: 62 LKNVVASLLKDK 74
          LK ++ASL++DK
Sbjct: 73 LKYMIASLIRDK 84

[Close]

BLAST of ClCG02G006040 vs. NCBI nr
Match: TYK28558.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 3.9e-18
Identity = 52/73 (71.23%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 1   MSHSGSIVEDTISRVLGFDHGHIRGLGFGVTKSKLSTSTQKDKTIASLKSKCNNLTSDVD 60
           ++ S SI++D ISRVLG D G++RGLGFGVT SK+STS  KDKTI SL+ KC+NLTSDVD
Sbjct: 102 VASSSSIIDDAISRVLGSDQGYVRGLGFGVTLSKVSTSIHKDKTITSLEKKCDNLTSDVD 161

Query: 61  DLKNVVASLLKDK 74
           +LK+VVASLLKDK
Sbjct: 162 ELKSVVASLLKDK 174

[Close]

BLAST of ClCG02G006040 vs. NCBI nr
Match: KAA0042856.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-17
Identity = 52/70 (74.29%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 4   SGSIVEDTISRVLGFDHGHIRGLGFGVTKSKLSTSTQKDKTIASLKSKCNNLTSDVDDLK 63
           S SI++D ISRVLG D  ++RGLGFGVT SK+STS QKDKTI SL+ KC+NLTSDVD+LK
Sbjct: 321 SSSIIDDAISRVLGPDQAYVRGLGFGVTLSKVSTSIQKDKTITSLEKKCDNLTSDVDELK 380

Query: 64  NVVASLLKDK 74
           +VVASLLKDK
Sbjct: 381 SVVASLLKDK 390

[Close]

BLAST of ClCG02G006040 vs. NCBI nr
Match: KAA0032201.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-17
Identity = 52/73 (71.23%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 1   MSHSGSIVEDTISRVLGFDHGHIRGLGFGVTKSKLSTSTQKDKTIASLKSKCNNLTSDVD 60
           ++ S SI++D ISRVLG D  ++RGLGFGVT SK+STS QKDKTI SL+ KC+NLTSDVD
Sbjct: 318 VASSSSIIDDAISRVLGPDQTYVRGLGFGVTLSKVSTSIQKDKTITSLEKKCDNLTSDVD 377

Query: 61  DLKNVVASLLKDK 74
           +LK+VVASLLKDK
Sbjct: 378 ELKSVVASLLKDK 390

[Close]

BLAST of ClCG02G006040 vs. NCBI nr
Match: KAA0057491.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 4.3e-17
Identity = 51/73 (69.86%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1   MSHSGSIVEDTISRVLGFDHGHIRGLGFGVTKSKLSTSTQKDKTIASLKSKCNNLTSDVD 60
           ++ S SI++D ISRVLG D  ++RGLGFGVT SK+STS QKDKTI SL+ KC+NLTSDVD
Sbjct: 318 VASSSSIIDDAISRVLGPDQAYVRGLGFGVTLSKVSTSIQKDKTITSLEKKCDNLTSDVD 377

Query: 61  DLKNVVASLLKDK 74
           +LK+VVAS LKDK
Sbjct: 378 ELKSVVASSLKDK 390

[Close]

BLAST of ClCG02G006040 vs. ExPASy TrEMBL
Match: A0A5D3DYN2 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G002050 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.9e-18
Identity = 52/73 (71.23%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 1   MSHSGSIVEDTISRVLGFDHGHIRGLGFGVTKSKLSTSTQKDKTIASLKSKCNNLTSDVD 60
           ++ S SI++D ISRVLG D G++RGLGFGVT SK+STS  KDKTI SL+ KC+NLTSDVD
Sbjct: 102 VASSSSIIDDAISRVLGSDQGYVRGLGFGVTLSKVSTSIHKDKTITSLEKKCDNLTSDVD 161

Query: 61  DLKNVVASLLKDK 74
           +LK+VVASLLKDK
Sbjct: 162 ELKSVVASLLKDK 174

[Close]

BLAST of ClCG02G006040 vs. ExPASy TrEMBL
Match: A0A5A7TLJ2 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G003690 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.5e-18
Identity = 52/70 (74.29%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 4   SGSIVEDTISRVLGFDHGHIRGLGFGVTKSKLSTSTQKDKTIASLKSKCNNLTSDVDDLK 63
           S SI++D ISRVLG D  ++RGLGFGVT SK+STS QKDKTI SL+ KC+NLTSDVD+LK
Sbjct: 321 SSSIIDDAISRVLGPDQAYVRGLGFGVTLSKVSTSIQKDKTITSLEKKCDNLTSDVDELK 380

Query: 64  NVVASLLKDK 74
           +VVASLLKDK
Sbjct: 381 SVVASLLKDK 390

[Close]

BLAST of ClCG02G006040 vs. ExPASy TrEMBL
Match: A0A5A7SRN7 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00120 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.2e-18
Identity = 52/73 (71.23%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 1   MSHSGSIVEDTISRVLGFDHGHIRGLGFGVTKSKLSTSTQKDKTIASLKSKCNNLTSDVD 60
           ++ S SI++D ISRVLG D  ++RGLGFGVT SK+STS QKDKTI SL+ KC+NLTSDVD
Sbjct: 318 VASSSSIIDDAISRVLGPDQTYVRGLGFGVTLSKVSTSIQKDKTITSLEKKCDNLTSDVD 377

Query: 61  DLKNVVASLLKDK 74
           +LK+VVASLLKDK
Sbjct: 378 ELKSVVASLLKDK 390

[Close]

BLAST of ClCG02G006040 vs. ExPASy TrEMBL
Match: A0A5A7UVF2 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003770 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.1e-17
Identity = 51/73 (69.86%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1   MSHSGSIVEDTISRVLGFDHGHIRGLGFGVTKSKLSTSTQKDKTIASLKSKCNNLTSDVD 60
           ++ S SI++D ISRVLG D  ++RGLGFGVT SK+STS QKDKTI SL+ KC+NLTSDVD
Sbjct: 318 VASSSSIIDDAISRVLGPDQAYVRGLGFGVTLSKVSTSIQKDKTITSLEKKCDNLTSDVD 377

Query: 61  DLKNVVASLLKDK 74
           +LK+VVAS LKDK
Sbjct: 378 ELKSVVASSLKDK 390

[Close]

BLAST of ClCG02G006040 vs. ExPASy TrEMBL
Match: A0A5A7UH01 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold773G00020 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.1e-17
Identity = 50/73 (68.49%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 1   MSHSGSIVEDTISRVLGFDHGHIRGLGFGVTKSKLSTSTQKDKTIASLKSKCNNLTSDVD 60
           ++ S SI++D ISRVLG D G+++GLGF VT SK+STS Q DKTI SL++KC+NLTSDVD
Sbjct: 199 VASSSSIIDDAISRVLGPDQGYVKGLGFCVTLSKVSTSIQNDKTITSLENKCDNLTSDVD 258

Query: 61  DLKNVVASLLKDK 74
           +LK+VVASLLKDK
Sbjct: 259 ELKSVVASLLKDK 271

The following BLAST results are available for this feature:

BLAST of ClCG02G006040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900033.1	1.3e-18	70.83	uncharacterized protein LOC120087197 [Benincasa hispida]	[more]
TYK28558.1	3.9e-18	71.23	Plant transposase [Cucumis melo var. makuwa]	[more]
KAA0042856.1	1.1e-17	74.29	Plant transposase [Cucumis melo var. makuwa]	[more]
KAA0032201.1	1.5e-17	71.23	Plant transposase [Cucumis melo var. makuwa]	[more]
KAA0057491.1	4.3e-17	69.86	Plant transposase [Cucumis melo var. makuwa]	[more]

BLAST of ClCG02G006040 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG02G006040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DYN2	1.9e-18	71.23	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00...	[more]
A0A5A7TLJ2	5.5e-18	74.29	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G003...	[more]
A0A5A7SRN7	7.2e-18	71.23	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00...	[more]
A0A5A7UVF2	2.1e-17	69.86	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G00...	[more]
A0A5A7UH01	6.1e-17	68.49	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold773G00020 PE...	[more]

BLAST of ClCG02G006040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 45..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G006040.1	ClCG02G006040.1	mRNA