ClCG02G005825 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G005825
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Protein kinase domain-containing protein
Location	CG_Chr02: 6423447 .. 6423830 (+)
RNA-Seq Expression	ClCG02G005825
Synteny	ClCG02G005825

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGAAGCCCAAAAAAAAGCAAAAAGGAACTGGCCTTAGATGGGGAAGATTCATTCATCGCTGTGGAATTTGATACCAGTTTCGACCCTTCGCTTGTTGACATCAATGGGAATCATATAGGTATTGGATGTCAACCATATAGGTATATAAGCGAGGGCGTATCTTTGGCTTCCGTTAATGTTGTTTCAAGGGGGATTGATTTGACCAGTGGGAGACAGATAACGGTTTGGATGCAACAGAAACCACATCATCAGCAAAAGAAAGTCCTTCAGCAGCAACTCGTAACTCTCCAAAGGAAGGGAAGGGGAATTGCTCCCCCAAACAAAGCCCCTACCCCTATTTATTGTGTTTACTTACTGAACTTGTTAGTCCCTCGCTAA

mRNA sequence

ATGAGAAGAAGCCCAAAAAAAAGCAAAAAGGAACTGGCCTTAGATGGGGAAGATTCATTCATCGCTGTGGAATTTGATACCAGTTTCGACCCTTCGCTTGTTGACATCAATGGGAATCATATAGGTATTGGATGTCAACCATATAGGTATATAAGCGAGGGCGTATCTTTGGCTTCCGTTAATGTTGTTTCAAGGGGGATTGATTTGACCAGTGGGAGACAGATAACGGTTTGGATGCAACAGAAACCACATCATCAGCAAAAGAAAGTCCTTCAGCAGCAACTCGTAACTCTCCAAAGGAAGGGAAGGGGAATTGCTCCCCCAAACAAAGCCCCTACCCCTATTTATTGTGTTTACTTACTGAACTTGTTAGTCCCTCGCTAA

Coding sequence (CDS)

ATGAGAAGAAGCCCAAAAAAAAGCAAAAAGGAACTGGCCTTAGATGGGGAAGATTCATTCATCGCTGTGGAATTTGATACCAGTTTCGACCCTTCGCTTGTTGACATCAATGGGAATCATATAGGTATTGGATGTCAACCATATAGGTATATAAGCGAGGGCGTATCTTTGGCTTCCGTTAATGTTGTTTCAAGGGGGATTGATTTGACCAGTGGGAGACAGATAACGGTTTGGATGCAACAGAAACCACATCATCAGCAAAAGAAAGTCCTTCAGCAGCAACTCGTAACTCTCCAAAGGAAGGGAAGGGGAATTGCTCCCCCAAACAAAGCCCCTACCCCTATTTATTGTGTTTACTTACTGAACTTGTTAGTCCCTCGCTAA

Protein sequence

MRRSPKKSKKELALDGEDSFIAVEFDTSFDPSLVDINGNHIGIGCQPYRYISEGVSLASVNVVSRGIDLTSGRQITVWMQQKPHHQQKKVLQQQLVTLQRKGRGIAPPNKAPTPIYCVYLLNLLVPR

Homology

[Close]

BLAST of ClCG02G005825 vs. NCBI nr
Match: KAA8546538.1 (hypothetical protein F0562_002723 [Nyssa sinensis])

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-12
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 11  ELALDGEDSFIAVEFDTSFDPSLVDINGNHIGIGCQPYRYISEGVSLASVNVVSRGIDLT 70
           E A + ++SFIAVEFDTSFDPSL DINGNHIGI       ++  +S ASV+V S+GIDL 
Sbjct: 128 EQAFNSQNSFIAVEFDTSFDPSLRDINGNHIGID------VNTAMSFASVDVTSKGIDLK 187

Query: 71  SGRQITVWMQ 81
           SGRQ+T W++
Sbjct: 188 SGRQMTAWIE 191

[Close]

BLAST of ClCG02G005825 vs. NCBI nr
Match: XP_030955918.1 (L-type lectin-domain containing receptor kinase S.6 [Quercus lobata])

HSP 1 Score: 83.2 bits (204), Expect = 1.8e-12
Identity = 41/68 (60.29%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 15  DGEDSFIAVEFDTSFDPSLVDINGNHIGIGCQPYRYISEGVSLASVNVVSRGIDLTSGRQ 74
           D +DSF AVEFDTS+DPSL D+NGNH+GI       ++  +SL+SV+VVSRGIDL SGRQ
Sbjct: 140 DEQDSFFAVEFDTSYDPSLGDMNGNHVGID------VNTIISLSSVDVVSRGIDLKSGRQ 199

Query: 75  ITVWMQQK 83
           IT W++ +
Sbjct: 200 ITAWIEYR 201

[Close]

BLAST of ClCG02G005825 vs. NCBI nr
Match: XP_023882237.1 (L-type lectin-domain containing receptor kinase S.6 [Quercus suber])

HSP 1 Score: 82.8 bits (203), Expect = 2.3e-12
Identity = 40/68 (58.82%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 15  DGEDSFIAVEFDTSFDPSLVDINGNHIGIGCQPYRYISEGVSLASVNVVSRGIDLTSGRQ 74
           D +DSF AVEFDTS+DPSL D+NGNH+GI       ++  +SL+SV+V+SRGIDL SGRQ
Sbjct: 136 DEQDSFFAVEFDTSYDPSLGDMNGNHVGID------VNTIISLSSVDVISRGIDLKSGRQ 195

Query: 75  ITVWMQQK 83
           IT W++ +
Sbjct: 196 ITAWIEYR 197

[Close]

BLAST of ClCG02G005825 vs. NCBI nr
Match: KAA8537873.1 (hypothetical protein F0562_027547 [Nyssa sinensis])

HSP 1 Score: 82.4 bits (202), Expect = 3.1e-12
Identity = 43/80 (53.75%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 11  ELALDGEDSFIAVEFDTSFDPSLVDINGNHIGIGCQPYRYISEGVSLASVNVVSRGIDLT 70
           ELAL+ +DSF+AVEFDT+FDPSL DIN NHIGI       ++  +S ASV+V SR IDL 
Sbjct: 188 ELALNSQDSFVAVEFDTNFDPSLGDINDNHIGID------VNTIMSFASVDVTSRDIDLK 247

Query: 71  SGRQITVWMQQKPHHQQKKV 91
           SGRQ+T W++ +   +  +V
Sbjct: 248 SGRQMTAWIEYRDSEKMIRV 261

[Close]

BLAST of ClCG02G005825 vs. NCBI nr
Match: KAF3971653.1 (hypothetical protein CMV_004771 [Castanea mollissima])

HSP 1 Score: 81.6 bits (200), Expect = 5.2e-12
Identity = 41/68 (60.29%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 15  DGEDSFIAVEFDTSFDPSLVDINGNHIGIGCQPYRYISEGVSLASVNVVSRGIDLTSGRQ 74
           D +DSF AVEFDTS+DPSL D NGNH+GI           +SL+SV+VVSRGIDL SGRQ
Sbjct: 141 DEQDSFFAVEFDTSYDPSLGDKNGNHVGIDANTI------ISLSSVDVVSRGIDLKSGRQ 200

Query: 75  ITVWMQQK 83
           IT W++ +
Sbjct: 201 ITAWIEYR 202

[Close]

BLAST of ClCG02G005825 vs. ExPASy Swiss-Prot
Match: Q9FHX3 (L-type lectin-domain containing receptor kinase S.6 OS=Arabidopsis thaliana OX=3702 GN=LECRKS6 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-09
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 17  EDSFIAVEFDTSFDPSLVDINGNHIGIGCQPYRYISEGVSLASVNVVSRGIDLTSGRQIT 76
           +DSFIAVEFDT FDP   DIN NH+GI       +S   S++SV+ +S+G DL SG+++ 
Sbjct: 138 DDSFIAVEFDTRFDPVHGDINDNHVGID------VSSIFSVSSVDAISKGFDLKSGKKMM 195

Query: 77  VWMQ 81
            W++
Sbjct: 198 AWIE 195

[Close]

BLAST of ClCG02G005825 vs. ExPASy Swiss-Prot
Match: Q9FHG4 (Probable L-type lectin-domain containing receptor kinase S.7 OS=Arabidopsis thaliana OX=3702 GN=LECRKS7 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.4e-06
Identity = 28/66 (42.42%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 17  EDSFIAVEFDTSFDPSLVDINGNHIGIGCQPYRYISEGVSLASVNVVSRGIDLTSGRQIT 76
           ++ F+A+EFDT  DP   D NGNHIG+       IS      S  ++S  IDL SG+ IT
Sbjct: 141 KNRFVAIEFDTKLDPHFNDPNGNHIGLDVDSLNSIS-----TSDPLLSSQIDLKSGKSIT 200

Query: 77  VWMQQK 83
            W+  K
Sbjct: 201 SWIDYK 201

[Close]

BLAST of ClCG02G005825 vs. ExPASy Swiss-Prot
Match: Q9LYX1 (L-type lectin-domain containing receptor kinase VIII.2 OS=Arabidopsis thaliana OX=3702 GN=LECRK82 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.2e-04
Identity = 23/60 (38.33%), Postives = 34/60 (56.67%), Query Frame = 0


Query: 20  FIAVEFDTSFDPSLVDINGNHIGIGCQPYRYISEGVSLASVNVVSRGIDLTSGRQITVWM 79
           F+AVEFDT  D    D+NGNH+G+       ++  VS A  ++ +  IDL SG  +  W+
Sbjct: 145 FVAVEFDTLMDVQFKDVNGNHVGLD------LNAVVSAAVADLGNVDIDLKSGNAVNSWI 198

[Close]

BLAST of ClCG02G005825 vs. ExPASy TrEMBL
Match: A0A5J5BUS1 (Protein kinase domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_002723 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.6e-13
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 11  ELALDGEDSFIAVEFDTSFDPSLVDINGNHIGIGCQPYRYISEGVSLASVNVVSRGIDLT 70
           E A + ++SFIAVEFDTSFDPSL DINGNHIGI       ++  +S ASV+V S+GIDL 
Sbjct: 128 EQAFNSQNSFIAVEFDTSFDPSLRDINGNHIGID------VNTAMSFASVDVTSKGIDLK 187

Query: 71  SGRQITVWMQ 81
           SGRQ+T W++
Sbjct: 188 SGRQMTAWIE 191

[Close]

BLAST of ClCG02G005825 vs. ExPASy TrEMBL
Match: A0A7N2KUC4 (Protein kinase domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 8.7e-13
Identity = 41/68 (60.29%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 15  DGEDSFIAVEFDTSFDPSLVDINGNHIGIGCQPYRYISEGVSLASVNVVSRGIDLTSGRQ 74
           D +DSF AVEFDTS+DPSL D+NGNH+GI       ++  +SL+SV+VVSRGIDL SGRQ
Sbjct: 140 DEQDSFFAVEFDTSYDPSLGDMNGNHVGID------VNTIISLSSVDVVSRGIDLKSGRQ 199

Query: 75  ITVWMQQK 83
           IT W++ +
Sbjct: 200 ITAWIEYR 201

[Close]

BLAST of ClCG02G005825 vs. ExPASy TrEMBL
Match: A0A5B7BAD8 (Protein kinase domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_034577 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 43/80 (53.75%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 11  ELALDGEDSFIAVEFDTSFDPSLVDINGNHIGIGCQPYRYISEGVSLASVNVVSRGIDLT 70
           ELAL+ +DSF+AVEFDT+FDPSL DINGNHIGI       ++  +S ASV+ VS  IDL 
Sbjct: 142 ELALNSQDSFVAVEFDTTFDPSLGDINGNHIGID------VNTVMSFASVDAVSGDIDLK 201

Query: 71  SGRQITVWMQQKPHHQQKKV 91
           SGRQ+T W++ +   +  +V
Sbjct: 202 SGRQMTAWIEYRDSEKMIRV 215

[Close]

BLAST of ClCG02G005825 vs. ExPASy TrEMBL
Match: A0A5J5B3V1 (Protein kinase domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_027547 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-12
Identity = 43/80 (53.75%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 11  ELALDGEDSFIAVEFDTSFDPSLVDINGNHIGIGCQPYRYISEGVSLASVNVVSRGIDLT 70
           ELAL+ +DSF+AVEFDT+FDPSL DIN NHIGI       ++  +S ASV+V SR IDL 
Sbjct: 188 ELALNSQDSFVAVEFDTNFDPSLGDINDNHIGID------VNTIMSFASVDVTSRDIDLK 247

Query: 71  SGRQITVWMQQKPHHQQKKV 91
           SGRQ+T W++ +   +  +V
Sbjct: 248 SGRQMTAWIEYRDSEKMIRV 261

[Close]

BLAST of ClCG02G005825 vs. ExPASy TrEMBL
Match: A0A067GYD4 (Protein kinase domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g047719mg PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.3e-12
Identity = 42/69 (60.87%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 14  LDGEDSFIAVEFDTSFDPSLVDINGNHIGIGCQPYRYISEGVSLASVNVVSRGIDLTSGR 73
           L  +DSF AVEFDTSFDPSL DINGNHIGI       IS  +S  SV+ +SRGIDL SGR
Sbjct: 57  LSPQDSFFAVEFDTSFDPSLGDINGNHIGID------ISSVISFVSVDALSRGIDLKSGR 116

Query: 74  QITVWMQQK 83
            IT W++ +
Sbjct: 117 HITTWIEYR 119

[Close]

BLAST of ClCG02G005825 vs. TAIR 10
Match: AT5G42120.1 (Concanavalin A-like lectin protein kinase family protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-10
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 17  EDSFIAVEFDTSFDPSLVDINGNHIGIGCQPYRYISEGVSLASVNVVSRGIDLTSGRQIT 76
           +DSFIAVEFDT FDP   DIN NH+GI       +S   S++SV+ +S+G DL SG+++ 
Sbjct: 138 DDSFIAVEFDTRFDPVHGDINDNHVGID------VSSIFSVSSVDAISKGFDLKSGKKMM 195

Query: 77  VWMQ 81
            W++
Sbjct: 198 AWIE 195

[Close]

BLAST of ClCG02G005825 vs. TAIR 10
Match: AT5G55830.1 (Concanavalin A-like lectin protein kinase family protein )

HSP 1 Score: 52.8 bits (125), Expect = 2.4e-07
Identity = 28/66 (42.42%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 17  EDSFIAVEFDTSFDPSLVDINGNHIGIGCQPYRYISEGVSLASVNVVSRGIDLTSGRQIT 76
           ++ F+A+EFDT  DP   D NGNHIG+       IS      S  ++S  IDL SG+ IT
Sbjct: 141 KNRFVAIEFDTKLDPHFNDPNGNHIGLDVDSLNSIS-----TSDPLLSSQIDLKSGKSIT 200

Query: 77  VWMQQK 83
            W+  K
Sbjct: 201 SWIDYK 201

[Close]

BLAST of ClCG02G005825 vs. TAIR 10
Match: AT5G03140.1 (Concanavalin A-like lectin protein kinase family protein )

HSP 1 Score: 45.8 bits (107), Expect = 3.0e-05
Identity = 23/60 (38.33%), Postives = 34/60 (56.67%), Query Frame = 0


Query: 20  FIAVEFDTSFDPSLVDINGNHIGIGCQPYRYISEGVSLASVNVVSRGIDLTSGRQITVWM 79
           F+AVEFDT  D    D+NGNH+G+       ++  VS A  ++ +  IDL SG  +  W+
Sbjct: 145 FVAVEFDTLMDVQFKDVNGNHVGLD------LNAVVSAAVADLGNVDIDLKSGNAVNSWI 198

[Close]

BLAST of ClCG02G005825 vs. TAIR 10
Match: AT3G53380.1 (Concanavalin A-like lectin protein kinase family protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.1e-04
Identity = 24/61 (39.34%), Postives = 33/61 (54.10%), Query Frame = 0


Query: 20  FIAVEFDTSFDPSLVDINGNHIGIGCQPYRYISEGVSLASVNVVSRGIDLTSGRQITVWM 79
           F+AVEFDT  D    DIN NH+G        ++  VS  S ++ +  IDL SG  I  W+
Sbjct: 132 FVAVEFDTLMDVDFKDINSNHVGFD------VNGVVSSVSGDLGTVNIDLKSGNTINSWI 186

Query: 80  Q 81
           +
Sbjct: 192 E 186

The following BLAST results are available for this feature:

BLAST of ClCG02G005825 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA8546538.1	1.4e-12	60.00	hypothetical protein F0562_002723 [Nyssa sinensis]	[more]
XP_030955918.1	1.8e-12	60.29	L-type lectin-domain containing receptor kinase S.6 [Quercus lobata]	[more]
XP_023882237.1	2.3e-12	58.82	L-type lectin-domain containing receptor kinase S.6 [Quercus suber]	[more]
KAA8537873.1	3.1e-12	53.75	hypothetical protein F0562_027547 [Nyssa sinensis]	[more]
KAF3971653.1	5.2e-12	60.29	hypothetical protein CMV_004771 [Castanea mollissima]	[more]

BLAST of ClCG02G005825 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHX3	1.5e-09	48.44	L-type lectin-domain containing receptor kinase S.6 OS=Arabidopsis thaliana OX=3...	[more]
Q9FHG4	3.4e-06	42.42	Probable L-type lectin-domain containing receptor kinase S.7 OS=Arabidopsis thal...	[more]
Q9LYX1	4.2e-04	38.33	L-type lectin-domain containing receptor kinase VIII.2 OS=Arabidopsis thaliana O...	[more]

BLAST of ClCG02G005825 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5J5BUS1	6.6e-13	60.00	Protein kinase domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_00...	[more]
A0A7N2KUC4	8.7e-13	60.29	Protein kinase domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A5B7BAD8	1.1e-12	53.75	Protein kinase domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_...	[more]
A0A5J5B3V1	1.5e-12	53.75	Protein kinase domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_02...	[more]
A0A067GYD4	4.3e-12	60.87	Protein kinase domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 G...	[more]

BLAST of ClCG02G005825 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42120.1	1.0e-10	48.44	Concanavalin A-like lectin protein kinase family protein	[more]
AT5G55830.1	2.4e-07	42.42	Concanavalin A-like lectin protein kinase family protein	[more]
AT5G03140.1	3.0e-05	38.33	Concanavalin A-like lectin protein kinase family protein	[more]
AT3G53380.1	1.1e-04	39.34	Concanavalin A-like lectin protein kinase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001220	Legume lectin domain	PFAM	PF00139	Lectin_legB	coord: 15..87 e-value: 1.3E-7 score: 31.4
None	No IPR available	GENE3D	2.60.120.200		coord: 2..117 e-value: 8.7E-10 score: 40.4
IPR019825	Legume lectin, beta chain, Mn/Ca-binding site	PROSITE	PS00307	LECTIN_LEGUME_BETA	coord: 21..27
IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	SUPERFAMILY	49899	Concanavalin A-like lectins/glucanases	coord: 18..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G005825.1	ClCG02G005825.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0002229	defense response to oomycetes
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0004675	transmembrane receptor protein serine/threonine kinase activity