ClCG02G004140 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG02G004140
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr02: 4212366 .. 4212686 (-)
RNA-Seq ExpressionClCG02G004140
SyntenyClCG02G004140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTGTCTCCTTGTCAAGTGTGGGGTATCACATCAAGTGCCAAGAATTCGTGAAGATGGCAGTAATAGAAAGGCAAGGAAAAGTCAAGGAGATGGTATTGTCGTTAGCGAGGAGGCTGCAACGGTAAAGAGCAAGAAATGGCATCAACGAAGACGGGGAGGCGGTAAGGAGATAAAGATGGTGTCGTCGTCGAGGTTGCGACCGTCACAAAGAGGGAGAGTTGAGTTAGGAGGGTGGCTTGCAGCATGGTTGGAAGAGGCTGAAGGCCAAAGAGAGAAAGATGAAGTTAAAGAGTTGGAAAAGGCATGCAAAGGCTAA

mRNA sequence

ATGGATTGTCTCCTTGTCAAGTGTGGGGTATCACATCAAGTGCCAAGAATTCGTGAAGATGGCAGTAATAGAAAGGCAAGGAAAAGTCAAGGAGATGGTATTGTCGTTAGCGAGGAGGCTGCAACGGTAAAGAGCAAGAAATGGCATCAACGAAGACGGGGAGGCGGTAAGGAGATAAAGATGGTGTCGTCGTCGAGGTTGCGACCGTCACAAAGAGGGAGAGTTGAGTTAGGAGGGTGGCTTGCAGCATGGTTGGAAGAGGCTGAAGGCCAAAGAGAGAAAGATGAAGTTAAAGAGTTGGAAAAGGCATGCAAAGGCTAA

Coding sequence (CDS)

ATGGATTGTCTCCTTGTCAAGTGTGGGGTATCACATCAAGTGCCAAGAATTCGTGAAGATGGCAGTAATAGAAAGGCAAGGAAAAGTCAAGGAGATGGTATTGTCGTTAGCGAGGAGGCTGCAACGGTAAAGAGCAAGAAATGGCATCAACGAAGACGGGGAGGCGGTAAGGAGATAAAGATGGTGTCGTCGTCGAGGTTGCGACCGTCACAAAGAGGGAGAGTTGAGTTAGGAGGGTGGCTTGCAGCATGGTTGGAAGAGGCTGAAGGCCAAAGAGAGAAAGATGAAGTTAAAGAGTTGGAAAAGGCATGCAAAGGCTAA

Protein sequence

MDCLLVKCGVSHQVPRIREDGSNRKARKSQGDGIVVSEEAATVKSKKWHQRRRGGGKEIKMVSSSRLRPSQRGRVELGGWLAAWLEEAEGQREKDEVKELEKACKG
Homology
BLAST of ClCG02G004140 vs. NCBI nr
Match: KGN43248.1 (hypothetical protein Csa_020351 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 6.1e-22
Identity = 70/108 (64.81%), Postives = 80/108 (74.07%), Query Frame = 0

Query: 1   MDCLLVKCGVSHQVPRIREDGSNRKARK-SQGDGIVVSEEAATVK-SKKWHQRRRGGGKE 60
           M+C L KCG  +QV RIREDG NRK RK  + D IV+ E   T+K S+K H+R R   KE
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVR--SKE 60

Query: 61  IKMV-SSSRLRPSQRGRVELGGWLAAWLEEAEGQREKDEVKELEKACK 106
            KM+ SSSRL+ SQ  RVELGGWLAAWLEEAEG+REKDEVKELEK  K
Sbjct: 61  RKMMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIK 106

BLAST of ClCG02G004140 vs. NCBI nr
Match: KAG6572110.1 (hypothetical protein SDJN03_28838, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-15
Identity = 56/103 (54.37%), Postives = 65/103 (63.11%), Query Frame = 0

Query: 1   MDCLLVKCGVSHQVPRIREDGSNRKARKSQGDGIVVSEEAATVKSKKWHQRRRGGGKEIK 60
           MDC LV CGVS Q  RI+ D + RK +K   DGIVV E   T K KKW +RRR  G   +
Sbjct: 1   MDCFLV-CGVSRQAMRIQADNNKRKVKKVVRDGIVVDETPTTTKGKKWQRRRRRVGDNER 60

Query: 61  MVSSSRLRPSQRGRVELGGWLAAWLEEAEGQREKDEVKELEKA 104
              +SRL+ +  GRVE GGWLAAWLEEA       E+KELEKA
Sbjct: 61  --ETSRLQRTDGGRVESGGWLAAWLEEA-------EMKELEKA 93

BLAST of ClCG02G004140 vs. NCBI nr
Match: KAG6589009.1 (hypothetical protein SDJN03_17574, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.4 bits (189), Expect = 8.2e-11
Identity = 47/105 (44.76%), Postives = 62/105 (59.05%), Query Frame = 0

Query: 1   MDCLLVKCGVSHQVPRIREDGSNRKARKSQGDGIVVSEEAATVKSKKWHQRRRGGGKEIK 60
           M C  +KCG S QVPRI+ D  ++K  ++Q D   V E    + +++ HQ +R   KE K
Sbjct: 1   MACFFLKCGGSRQVPRIQNDDGSKKPMETQQDD-TVDEAPVEISNQRQHQ-QRVDSKERK 60

Query: 61  MVSSSRLRPSQRGRVELGGWLAAWLEEAEGQREKDEVKELEKACK 106
             S  R      G+ E  GWLAAWLEEAEG  EKDE+K L++A K
Sbjct: 61  TTSLKR-----GGKSESSGWLAAWLEEAEGHGEKDEIKALKEAAK 98

BLAST of ClCG02G004140 vs. NCBI nr
Match: KAG7011763.1 (Ubiquitin-conjugating enzyme E2 28 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 75.5 bits (184), Expect = 3.1e-10
Identity = 46/88 (52.27%), Postives = 55/88 (62.50%), Query Frame = 0

Query: 16  RIREDGSNRKARKSQGDGIVVSEEAATVKSKKWHQRRRGGGKEIKMVSSSRLRPSQRGRV 75
           RI+ D + RK +K   DGIVV E   T K KKW +RRR  G   +   +SRL+ +  GRV
Sbjct: 227 RIQADNNKRKVKKVVRDGIVVDETPTTTKGKKWQRRRRRVGDNER--ETSRLQRTDGGRV 286

Query: 76  ELGGWLAAWLEEAEGQREKDEVKELEKA 104
           E GGWLAAWLEEA       E+KELEKA
Sbjct: 287 ESGGWLAAWLEEA-------EMKELEKA 305

BLAST of ClCG02G004140 vs. NCBI nr
Match: KAG6589008.1 (hypothetical protein SDJN03_17573, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.3 bits (155), Expect = 7.2e-07
Identity = 47/94 (50.00%), Postives = 62/94 (65.96%), Query Frame = 0

Query: 11  SHQVPRIREDGSNRKARKSQGDGIVVSEEAATVKSKKWHQRRRGGGKEIKMVSSSRLRPS 70
           S QV RI +D  ++K+RK+Q D   V +    + +K+  ++RR   KE K +S + LR  
Sbjct: 128 SCQVSRIYDDEGSKKSRKTQRDD-TVGDTLEAIGNKR-RRQRRVDNKEQKTMSFT-LR-- 187

Query: 71  QRG-RVELGGWLAAWLEEAEGQREKDEVKELEKA 104
           QRG R ELGGWLAAWLEEAE   EKDE+K LE+A
Sbjct: 188 QRGERNELGGWLAAWLEEAESHTEKDEIKALEEA 216

BLAST of ClCG02G004140 vs. ExPASy TrEMBL
Match: A0A0A0K1A5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.9e-22
Identity = 70/108 (64.81%), Postives = 80/108 (74.07%), Query Frame = 0

Query: 1   MDCLLVKCGVSHQVPRIREDGSNRKARK-SQGDGIVVSEEAATVK-SKKWHQRRRGGGKE 60
           M+C L KCG  +QV RIREDG NRK RK  + D IV+ E   T+K S+K H+R R   KE
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVR--SKE 60

Query: 61  IKMV-SSSRLRPSQRGRVELGGWLAAWLEEAEGQREKDEVKELEKACK 106
            KM+ SSSRL+ SQ  RVELGGWLAAWLEEAEG+REKDEVKELEK  K
Sbjct: 61  RKMMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIK 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN43248.16.1e-2264.81hypothetical protein Csa_020351 [Cucumis sativus][more]
KAG6572110.11.9e-1554.37hypothetical protein SDJN03_28838, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6589009.18.2e-1144.76hypothetical protein SDJN03_17574, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7011763.13.1e-1052.27Ubiquitin-conjugating enzyme E2 28 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6589008.17.2e-0750.00hypothetical protein SDJN03_17573, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K1A52.9e-2264.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..66

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G004140.1ClCG02G004140.1mRNA