ClCG02G003990 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G003990
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	trafficking protein particle complex subunit 2-like protein
Location	CG_Chr02: 4091334 .. 4094025 (-)
RNA-Seq Expression	ClCG02G003990
Synteny	ClCG02G003990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGTTACCATTAGTTTTTTCTTCACCCAATTTAGAAGATCCAACCTTCTTCGTGGTATCGCGACCGAAAAATTCGCATTGCCCGAGTTTTTTTTTCGCAATCCAGCAAAATAATTCCGGCCAGCCATCGTCGAAGATGATCGTCTGCGTCGCCGTCGTCGGCCACCAGGTGCGACCCCCACGAATACCATATTTTATGGAAATAATTTCATATATGTTTATAAGAAAAGATTTGTGATCCCTTTTCCGATTCGGGGCGAGCTAACAGAACAACCCCCTTTACATTCAAAGCTTCACGGAGGCCGATGATGCTCTCAAGCTCCACCACATTGTACACTGTTCGCTGGATGTCGTCGATGAGCGGGGTGTGTTTATCTTGCTTACCTTTCTGTTTTCTTGCTTGTAATTTGATATTTCGCGGATCAGATCCAGGAATCTCGCTTGCTGTTGTACTCAACTACTAGGGTTTTTGAACTTCTATGATTTATGTGTCTTGCTGACTTCAATTCGTTCTTCTGATATTGTTTGTGGTGCTGTTGTCAGTGAACAATCCGAGAAAATCTGGACCAACCCTGAACGAAACATTTCTGGGTCTTCTTTATCCGACCGAAAATTACAAAGTGTGAGTATGATTGTTCATATAAGTAGGATCAGAATTGGTCCTGTTTTCTATTTCAATTGGGGTGGATCTTTAATGCTCTGTACATTTCCAGGTATGGCTATTTGACTAACACCAAAGTGAAGTTTATTATGGTGACAACAGATCTAGATGTCAGAGATGCCGATGTGAGAAGTGTGAGTACCATTTGTGGGTTTTCAATTTTCTACAGCATTATAGTTCTTTCATTTTCACATGTGAACTATCACTGTAAAGTAAGTCTTAAGGCGAAAAACTCCAGCCTTTGTCTATTTTTGAAGATGTTAGTGATGCAAACACTTCAATCAGTGCCTTCTATTATTCAGTTGTCCTTTAGGATTAGAAGTTTTCTTTCAATGATATAGGGCAAGCTTTCCCATGGTTGCTGTTTTAATAGTGATGTGAACGTGATATATTCCTAGAGAGGAGATTGACATGTATTACCTTTCTCGACGGCCAGCTGAAACCAGAATTGGCATCTGTTGGTATCTCAAACTAGCTTCTTATGCTCGAAATATGCACACCCTTTAATCTCTAAATATGCATAATAATAGAGGATATATAAGGGCCAGCATGAGTATAGCTCAATGATAATTGACATGTACTCATACCTCAAAACCTATAATAGAGTATATGTGAATACCATCATAGTTCTTCAGTAAGATATGGATTTGAACATGACAGATTATAGAGACTATAGAGGTACACTACACTATTATAAGTATTTATTTTCACCTCACAGACTGCAGAAACAAGAAATGATGTCCACTAAAATCTGAAATTAGATTCTTATCTCAAAATACTGATGTTCAAAATTTTCTGGAACACAACCTAACAATAGGATATTTTAATAATGTGGAATATATGATTCATTATTAGTATTATTATTTGTTAAGAAAGCATTGTTCTCATTTATCGTTTGTACTATAACTTGACAGATGAAGTGTGGCATGATTTTATTTTTGATAACACGCTCCTTTAGGCAGTTTCGGTTTAGTAACCAACCATGAGTTGACTTGGTGAGACATAGTCTTAATAAATGGTTAAGAAGTCATGGATTCAATCCATGGTGGCCACTTACTTATGAAATAATATCCTACAAATTTCTTTTACATCCAAATGTTATAGAGTCAATCGGGCTGTTCTATGAGATTAGTCAAGGTGCGCATAATATGTAAAAGGAAGTTTAGTAATCTTGTAGCCTTTATTTGGATTGTGAGTAGGATTGGATTTAAGAAGTTTCAGCTTTTGTATAGTTTGTGTTTGGATTACAAGTTTATAACTTTCAATAATCTAATTGTACTGCATGGTTTATAGTTCTGTTGTGCAAAAATCTATTCCCTGAGTGATACCACTTTGTTATGGCATTACTTAAACAAATCTATAATAAAGGCTATACACCTATGTCCTTAGTGATACCTCTCTGTGTAATTGATGGCTTGATGCACTCTTTCTCACAAACTATATTGTTTACTACTATTTCTTTTCTGAAAAAGAACATTAAATTTAGCCAATTTTGGTTCTGCCTTGCATATACATTCAACACGTAGCATATGCGAAACTCCTTAACATGACATCTGACCGTAGTCCGAATTTGTGTCCAGTTTTTCAGGAGATTTCATGCTGCATATGTGGATGCAGTTTCAAACCCATTTCATGTGCCAGGTAAGAAAATTACTTCCAAGACATTTGCAGAAAGTGTGAGCACCATTGTCAAGTCCTTTGGCTTCAGTTCAGCTATTTGAGTGACAAACCAGGCAACCATTGACGTGTAGAACTGAAACTTCAATACCGAGTCTGAAGCCATTGACAGCCGTAGTTTACCTTACTGCTGTTGTCTACTGCCATTTTTCTTGTATTCTTGATAGTATTTGAAATTTCTTTTTCTCCAGTGTAGTAAGAAAGGTGAAACAATTCAACTTTCTTTTTTCATTGGCATTTACTGTTTCTATTTTATGCTCGTCTCACATGACAGACTGGTTTCTGTTTCAAGGTGAAAATTTATCCGTATGAAATGCAAGATTGAAGGGTTTATTATTATTGTTTTTTAAAGA

mRNA sequence

AAGAGTTACCATTAGTTTTTTCTTCACCCAATTTAGAAGATCCAACCTTCTTCGTGGTATCGCGACCGAAAAATTCGCATTGCCCGAGTTTTTTTTTCGCAATCCAGCAAAATAATTCCGGCCAGCCATCGTCGAAGATGATCGTCTGCGTCGCCGTCGTCGGCCACCAGAACAACCCCCTTTACATTCAAAGCTTCACGGAGGCCGATGATGCTCTCAAGCTCCACCACATTGTACACTGTTCGCTGGATGTCGTCGATGAGCGGGTGAACAATCCGAGAAAATCTGGACCAACCCTGAACGAAACATTTCTGGGTCTTCTTTATCCGACCGAAAATTACAAAGTGTATGGCTATTTGACTAACACCAAAGTGAAGTTTATTATGGTGACAACAGATCTAGATGTCAGAGATGCCGATGTGAGAAGTGTGAGTACCATTTGTGGGTTTTCAATTTTCTACAGCATTATAGTTCTTTCATTTTCACATGTGAACTATCACTGTAAATTTTTCAGGAGATTTCATGCTGCATATGTGGATGCAGTTTCAAACCCATTTCATGTGCCAGGTAAGAAAATTACTTCCAAGACATTTGCAGAAAGTGTGAGCACCATTGTCAAGTCCTTTGGCTTCAGTTCAGCTATTTGAGTGACAAACCAGGCAACCATTGACGTGTAGAACTGAAACTTCAATACCGAGTCTGAAGCCATTGACAGCCGTAGTTTACCTTACTGCTGTTGTCTACTGCCATTTTTCTTGTATTCTTGATAGTATTTGAAATTTCTTTTTCTCCAGTGTAGTAAGAAAGGTGAAACAATTCAACTTTCTTTTTTCATTGGCATTTACTGTTTCTATTTTATGCTCGTCTCACATGACAGACTGGTTTCTGTTTCAAGGTGAAAATTTATCCGTATGAAATGCAAGATTGAAGGGTTTATTATTATTGTTTTTTAAAGA

Coding sequence (CDS)

ATGATCGTCTGCGTCGCCGTCGTCGGCCACCAGAACAACCCCCTTTACATTCAAAGCTTCACGGAGGCCGATGATGCTCTCAAGCTCCACCACATTGTACACTGTTCGCTGGATGTCGTCGATGAGCGGGTGAACAATCCGAGAAAATCTGGACCAACCCTGAACGAAACATTTCTGGGTCTTCTTTATCCGACCGAAAATTACAAAGTGTATGGCTATTTGACTAACACCAAAGTGAAGTTTATTATGGTGACAACAGATCTAGATGTCAGAGATGCCGATGTGAGAAGTGTGAGTACCATTTGTGGGTTTTCAATTTTCTACAGCATTATAGTTCTTTCATTTTCACATGTGAACTATCACTGTAAATTTTTCAGGAGATTTCATGCTGCATATGTGGATGCAGTTTCAAACCCATTTCATGTGCCAGGTAAGAAAATTACTTCCAAGACATTTGCAGAAAGTGTGAGCACCATTGTCAAGTCCTTTGGCTTCAGTTCAGCTATTTGA

Protein sequence

MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVSTICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI

Homology

[Close]

BLAST of ClCG02G003990 vs. NCBI nr
Match: XP_004144858.1 (trafficking protein particle complex subunit 2-like protein [Cucumis sativus] >XP_008447943.1 PREDICTED: trafficking protein particle complex subunit 2-like protein [Cucumis melo] >XP_038887443.1 trafficking protein particle complex subunit 2-like protein [Benincasa hispida] >KGN43262.1 hypothetical protein Csa_020365 [Cucumis sativus])

HSP 1 Score: 275.4 bits (703), Expect = 3.3e-70
Identity = 143/169 (84.62%), Postives = 143/169 (84.62%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVSTICGFSIFYSIIVLSFSHVNY 120
           LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRS                       
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRS----------------------- 120

Query: 121 HCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI 170
              FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI
Sbjct: 121 ---FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI 143

[Close]

BLAST of ClCG02G003990 vs. NCBI nr
Match: XP_022928280.1 (trafficking protein particle complex subunit 2-like protein [Cucurbita moschata] >XP_022989273.1 trafficking protein particle complex subunit 2-like protein [Cucurbita maxima] >XP_023529813.1 trafficking protein particle complex subunit 2-like protein [Cucurbita pepo subsp. pepo] >KAG7015283.1 Trafficking protein particle complex subunit 2-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 274.2 bits (700), Expect = 7.3e-70
Identity = 142/169 (84.02%), Postives = 143/169 (84.62%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVSTICGFSIFYSIIVLSFSHVNY 120
           LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVR+                       
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRN----------------------- 120

Query: 121 HCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI 170
              FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI
Sbjct: 121 ---FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI 143

[Close]

BLAST of ClCG02G003990 vs. NCBI nr
Match: KAG6589019.1 (Transcription factor ABORTED MICROSPORES, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 274.2 bits (700), Expect = 7.3e-70
Identity = 142/169 (84.02%), Postives = 143/169 (84.62%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG
Sbjct: 603 MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 662

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVSTICGFSIFYSIIVLSFSHVNY 120
           LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVR+                       
Sbjct: 663 LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRN----------------------- 722

Query: 121 HCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI 170
              FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI
Sbjct: 723 ---FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI 745

[Close]

BLAST of ClCG02G003990 vs. NCBI nr
Match: XP_022136317.1 (trafficking protein particle complex subunit 2-like protein [Momordica charantia])

HSP 1 Score: 271.6 bits (693), Expect = 4.7e-69
Identity = 139/169 (82.25%), Postives = 143/169 (84.62%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDV++ERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVSTICGFSIFYSIIVLSFSHVNY 120
           LLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVRS                       
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRS----------------------- 120

Query: 121 HCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI 170
              FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSA+
Sbjct: 121 ---FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAV 143

[Close]

BLAST of ClCG02G003990 vs. NCBI nr
Match: XP_031127945.1 (trafficking protein particle complex subunit 2-like protein [Ipomoea triloba])

HSP 1 Score: 266.9 bits (681), Expect = 1.2e-67
Identity = 137/168 (81.55%), Postives = 141/168 (83.93%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNP+KSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVSTICGFSIFYSIIVLSFSHVNY 120
           LLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVR+                       
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN----------------------- 120

Query: 121 HCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSA 169
              FFRRFHAAYVDAVSNPFHVPGKKITS+TFAESVSTIVKSFG SSA
Sbjct: 121 ---FFRRFHAAYVDAVSNPFHVPGKKITSRTFAESVSTIVKSFGLSSA 142

[Close]

BLAST of ClCG02G003990 vs. ExPASy Swiss-Prot
Match: Q54CU7 (Trafficking protein particle complex subunit 2-like protein OS=Dictyostelium discoideum OX=44689 GN=trappc2l PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.3e-29
Identity = 68/165 (41.21%), Postives = 102/165 (61.82%), Query Frame = 0


Query: 2   IVCVAVVGHQNNPLYIQSFTEA---DDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETF 61
           IVCVA+VG  NNPL+IQ F+ +   ++ LKLH+IVHCSLD+++++  + +K     ++ +
Sbjct: 4   IVCVAIVGKGNNPLFIQDFSSSITDENKLKLHYIVHCSLDIIEDKPGSNKK---LPSDMY 63

Query: 62  LGLLYPTENYKVYGYLTNTKVKFIMVTTDL-DVRDADVRSVSTICGFSIFYSIIVLSFSH 121
           LGLLYPTE+YKVYGYLTNTK+KFI+V  D  D++D+D++                     
Sbjct: 64  LGLLYPTEDYKVYGYLTNTKIKFIIVVLDTSDIKDSDLK--------------------- 123

Query: 122 VNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKS 163
                 FF+R    +++  SNPF+ P  K+ SK F + V+ +V S
Sbjct: 124 -----LFFKRLQTLFINTTSNPFYKPNSKVESKKFLQEVTNLVPS 139

[Close]

BLAST of ClCG02G003990 vs. ExPASy Swiss-Prot
Match: Q5M8X5 (Trafficking protein particle complex subunit 2-like protein OS=Xenopus tropicalis OX=8364 GN=trappc2l PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.6e-27
Identity = 67/162 (41.36%), Postives = 99/162 (61.11%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           M VCVAV+  +N PLYI+S T  ++ LK H+ VH SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCVAVIAKENYPLYIRS-TPTENQLKFHYTVHTSLDVVDEKISAMGKAVMDQRELYLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRSVSTICGFSIFYSIIVLSFSHV 120
           LLYPTE+YKVYGY+TN+KVKF+MV  +++  +RD ++RS+                    
Sbjct: 61  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTSLRDNEIRSM-------------------- 120

Query: 121 NYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIV 161
                 FR+ H +Y D + NPF+ PG  I S+ F  +V++++
Sbjct: 121 ------FRKLHNSYTDVMCNPFYNPGDPIQSRAFDNTVTSMM 135

[Close]

BLAST of ClCG02G003990 vs. ExPASy Swiss-Prot
Match: B2RYU6 (Trafficking protein particle complex subunit 2-like protein OS=Rattus norvegicus OX=10116 GN=Trappc2l PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.7e-27
Identity = 66/162 (40.74%), Postives = 100/162 (61.73%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           M VC+AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRSVSTICGFSIFYSIIVLSFSHV 120
           LLYPTE+YKVYGY+TN+KVKF+MV  +++  +RD ++RS+                    
Sbjct: 61  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSM-------------------- 120

Query: 121 NYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIV 161
                 FR+ H +Y D + NPF+ PG +I S+ F   V++++
Sbjct: 121 ------FRKLHNSYTDVMCNPFYNPGDRIQSRAFDTMVTSMM 135

[Close]

BLAST of ClCG02G003990 vs. ExPASy Swiss-Prot
Match: Q9JME7 (Trafficking protein particle complex subunit 2-like protein OS=Mus musculus OX=10090 GN=Trappc2l PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.6e-27
Identity = 66/162 (40.74%), Postives = 99/162 (61.11%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           M VC+AV+  +N PLYI+S T  +  LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCIAVIAKENYPLYIRS-TPTESELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRSVSTICGFSIFYSIIVLSFSHV 120
           LLYPTE+YKVYGY+TN+KVKF+MV  +++  +RD ++RS+                    
Sbjct: 61  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSM-------------------- 120

Query: 121 NYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIV 161
                 FR+ H +Y D + NPF+ PG +I S+ F   V++++
Sbjct: 121 ------FRKLHNSYTDVMCNPFYNPGDRIQSRAFDTMVTSMM 135

[Close]

BLAST of ClCG02G003990 vs. ExPASy Swiss-Prot
Match: A6H7F7 (Trafficking protein particle complex subunit 2-like protein OS=Bos taurus OX=9913 GN=TRAPPC2L PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-26
Identity = 66/162 (40.74%), Postives = 99/162 (61.11%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           M VCVAV+  +N PLYI+S    ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCVAVIAKENYPLYIRSI-PTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRSVSTICGFSIFYSIIVLSFSHV 120
           LLYPTE+YKVYGY+TN+KVKF+MV  +++  +RD ++RS+                    
Sbjct: 61  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSM-------------------- 120

Query: 121 NYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIV 161
                 FR+ H +Y D + NPF+ PG +I S+ F   V++++
Sbjct: 121 ------FRKLHNSYTDVMCNPFYNPGDRIQSRAFDGMVTSMM 135

[Close]

BLAST of ClCG02G003990 vs. ExPASy TrEMBL
Match: A0A0A0K4Q0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014480 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.6e-70
Identity = 143/169 (84.62%), Postives = 143/169 (84.62%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVSTICGFSIFYSIIVLSFSHVNY 120
           LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRS                       
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRS----------------------- 120

Query: 121 HCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI 170
              FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI
Sbjct: 121 ---FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI 143

[Close]

BLAST of ClCG02G003990 vs. ExPASy TrEMBL
Match: A0A1S3BJH9 (trafficking protein particle complex subunit 2-like protein OS=Cucumis melo OX=3656 GN=LOC103490277 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.6e-70
Identity = 143/169 (84.62%), Postives = 143/169 (84.62%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVSTICGFSIFYSIIVLSFSHVNY 120
           LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRS                       
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRS----------------------- 120

Query: 121 HCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI 170
              FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI
Sbjct: 121 ---FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI 143

[Close]

BLAST of ClCG02G003990 vs. ExPASy TrEMBL
Match: A0A6J1JPT4 (Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111486394 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.5e-70
Identity = 142/169 (84.02%), Postives = 143/169 (84.62%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVSTICGFSIFYSIIVLSFSHVNY 120
           LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVR+                       
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRN----------------------- 120

Query: 121 HCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI 170
              FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI
Sbjct: 121 ---FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI 143

[Close]

BLAST of ClCG02G003990 vs. ExPASy TrEMBL
Match: A0A6J1ERA2 (Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LOC111435157 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.5e-70
Identity = 142/169 (84.02%), Postives = 143/169 (84.62%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVSTICGFSIFYSIIVLSFSHVNY 120
           LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVR+                       
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRN----------------------- 120

Query: 121 HCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI 170
              FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI
Sbjct: 121 ---FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI 143

[Close]

BLAST of ClCG02G003990 vs. ExPASy TrEMBL
Match: A0A6J1C584 (trafficking protein particle complex subunit 2-like protein OS=Momordica charantia OX=3673 GN=LOC111008034 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.3e-69
Identity = 139/169 (82.25%), Postives = 143/169 (84.62%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDV++ERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVSTICGFSIFYSIIVLSFSHVNY 120
           LLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVRS                       
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRS----------------------- 120

Query: 121 HCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI 170
              FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSA+
Sbjct: 121 ---FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAV 143

[Close]

BLAST of ClCG02G003990 vs. TAIR 10
Match: AT2G20930.1 (SNARE-like superfamily protein )

HSP 1 Score: 242.7 bits (618), Expect = 2.2e-64
Identity = 122/166 (73.49%), Postives = 133/166 (80.12%), Query Frame = 0


Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFT+ADDALKLHHIVHCSLDV++ERVNNP+KSG TLNE FLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTDADDALKLHHIVHCSLDVIEERVNNPKKSGTTLNEAFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVSTICGFSIFYSIIVLSFSHVNY 120
           LLYPT NYKVYGYLTNTKVKFI+VTTDLDVRD DVRS                       
Sbjct: 61  LLYPTVNYKVYGYLTNTKVKFILVTTDLDVRDTDVRS----------------------- 120

Query: 121 HCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFS 167
              FFR+FHAAYVDAVSNPFHVPGKKITS+TFA++VS IV S+G +
Sbjct: 121 ---FFRKFHAAYVDAVSNPFHVPGKKITSRTFAQTVSNIVGSYGLN 140

The following BLAST results are available for this feature:

BLAST of ClCG02G003990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144858.1	3.3e-70	84.62	trafficking protein particle complex subunit 2-like protein [Cucumis sativus] >X...	[more]
XP_022928280.1	7.3e-70	84.02	trafficking protein particle complex subunit 2-like protein [Cucurbita moschata]...	[more]
KAG6589019.1	7.3e-70	84.02	Transcription factor ABORTED MICROSPORES, partial [Cucurbita argyrosperma subsp....	[more]
XP_022136317.1	4.7e-69	82.25	trafficking protein particle complex subunit 2-like protein [Momordica charantia...	[more]
XP_031127945.1	1.2e-67	81.55	trafficking protein particle complex subunit 2-like protein [Ipomoea triloba]	[more]

BLAST of ClCG02G003990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54CU7	1.3e-29	41.21	Trafficking protein particle complex subunit 2-like protein OS=Dictyostelium dis...	[more]
Q5M8X5	1.6e-27	41.36	Trafficking protein particle complex subunit 2-like protein OS=Xenopus tropicali...	[more]
B2RYU6	2.7e-27	40.74	Trafficking protein particle complex subunit 2-like protein OS=Rattus norvegicus...	[more]
Q9JME7	3.6e-27	40.74	Trafficking protein particle complex subunit 2-like protein OS=Mus musculus OX=1...	[more]
A6H7F7	1.0e-26	40.74	Trafficking protein particle complex subunit 2-like protein OS=Bos taurus OX=991...	[more]

BLAST of ClCG02G003990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4Q0	1.6e-70	84.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014480 PE=4 SV=1	[more]
A0A1S3BJH9	1.6e-70	84.62	trafficking protein particle complex subunit 2-like protein OS=Cucumis melo OX=3...	[more]
A0A6J1JPT4	3.5e-70	84.02	Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1ERA2	3.5e-70	84.02	Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1C584	2.3e-69	82.25	trafficking protein particle complex subunit 2-like protein OS=Momordica charant...	[more]

BLAST of ClCG02G003990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20930.1	2.2e-64	73.49	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.450.70		coord: 1..165 e-value: 7.8E-40 score: 137.6
None	No IPR available	PANTHER	PTHR12403:SF26	BNAA06G40850D PROTEIN	coord: 123..164 coord: 1..98
IPR006722	Trafficking protein particle complex subunit 2	PFAM	PF04628	Sedlin_N	coord: 7..161 e-value: 1.6E-28 score: 99.4
IPR006722	Trafficking protein particle complex subunit 2	PANTHER	PTHR12403	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2	coord: 123..164 coord: 1..98
IPR044760	Trafficking protein particle complex subunit 2-like	CDD	cd14854	TRAPPC2L	coord: 3..160 e-value: 3.71383E-62 score: 186.257
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 2..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G003990.2	ClCG02G003990.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005634	nucleus
cellular_component	GO:0030008	TRAPP complex