ClCG02G002110 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G002110
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	RNase III domain-containing protein
Location	CG_Chr02: 2172592 .. 2177624 (-)
RNA-Seq Expression	ClCG02G002110
Synteny	ClCG02G002110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAATCGAGCAGAGAGTCGACTTATTGAAAGAGGAAGGCAGCAGCGGCGGAGAGGCGGTCAACGGCGGCGATTCGGCGGCGAGTCTGGACGGAATTGAAGCGATTCTGAACTACGAGTTTCGAGACAAAAGATTACTGGAGGAGGCTTTTACAGACGCATCGTATTCACCGGAAAATTGCTCGTCGTTCGAGCGATTGGAGTATGTCGGAGATTCGGTGTTGAATTTTCTGATAACGAGAGAACAATATTTCTCGAATCCGAATCTGTCGCCGGGTTCCCTGACTCGGCTCCGAGCGGCGAATGTGGACACGGAAAAGCTTGCTCGAGTTGCAATTACGCATGGATTTCATCGATATCTTCGCCACAACAAACCTGATCTTCATCAAAAAGTAAGTATCAGATTATATTTGTTTAATTTCTTCATCGTTCTCATCGATTACTCATTGACTTCCTTATTAATTCCTCCCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTCGTAATTATCATCATTTAATTCTCATCCAATCCATCCATATGATCATTCTTTTCTCTTTAGTTTCCTAATTTTCTTTTACCTCTTAATCATAAACATTTGCTTTTAGGCTTCAACCACTATTTCATAGTTTTTGCATATATATTTTTTTTTTGATAAATTTTAAATTATAACAAAAAATATGTGATATATTTTTTGAAATCCATTAATAGAATGCTAATAAAGATAATTGGGTGTACTTACTCAAATTTGAATATACAGAAAAAAAGAAGTAGGATATTATTTTTTTTTATTTTTTATTTTTTTAAAGAAAAGAGACATAAAAAAATCAAATTTTACTTCAGGGGTGTAAAAAAACCTAATTAATGTGAAAGCCAACTTGAATTTGAAAACAAAAAGGGAAAAAAACAAATTAAAATTTTCATGGTTGACTTTTAAAAATTGTCTAATGAATTTTTTACATATTTAAAAATTGAAGTGGGAGGTTCTATGGGATAAAGTTTAGGAATATATAAAATAATGGTAAAAGTTTAAAATCAAAATTTAATTTAATTCAAATTTAAAATTTAAGATTTATATATAATTTAATCTAAGAGTTTTTATTTTATTTTATTTTATTGGTGTCTAGTATATTGAACTTTTTAGGTAACTATTCCTTTTAAATATGCTTTCCTCGTTTTTTTTCTTCTTTTGGCAAGGTACTTTTCCCATAATCACTTTCTCTAGACTTTTTGAGCTCTTTTAGATATAAAATTGATTAAAAAATTTGTCTTCTCTAACAAGATAAAAATAGAATTTTAGATAGATTCCTTGAATTAGAAATAAGATACTATAGGTGTGTAGAACAATCTATATTTGAGTTACATTCGCTATTATTTTTTAGAATAATCTAATTTTTATTATTTTAAATAATTATATAACATTTTAAATTAGAAATATAATTTAGACCGAAGAGATCCTTTTGAAAAATTATTTTTCTAATTTAAAACGCCATATAATTATTTACAATAATTAGAAAAAATAACTTCTTAAAAATTTGGGAATTAAAAATATATCTTCTGTAAACTTCGTAACCCCCATATTCTTTAAAGCTTGAAATAAAAAAGTAATTTTTCATTTTTAGTTCAACAGCATGTGGAGTTCACTATAGTTGATGTAAATTATAAATTAACGGAGAAGGCGTAAGATCCTGTGAAAATTAAATGTAGTAATTTATGGTGTGTTCCCACATTTATTATTATTATTTGAAATATTTGAATTTCTTAAATTAACTAAGAATGCATGAAAATTGAACGCAGTGTATGTCTTACCACTCCATTTATTCTTTCAAATCTTTTGCTTGCTCCCTAAGTTTTAAATGTTACCTATTTAGATTTTTAATTTAGTTTATAGGATTCAAAATGCCACAATTTTATATTTGAGAGTTGAGTTTTGTATCAATTTGATCCTTAAACAGACTAAATAGAAACTAAACTCACAACTTTTTTCCTATGTGTCTATTTCTTCCCTTACCTTTATTAAAACCAACCTAACATTATTCCTTATTGAATTAAAAATTCTCTTGAAATATAAAAATAATTGTAGAAACCTATGTTATGCCCGTAAAATTGGTATTATTAATTTCGAAGTCTGATGTTCAATTCACTACCTTACAATGTTGTAAAAAAATTCGAATTTATCTAAAATAACATCGAAAACAAAATATCATAAGTTATCAAGCAAAGTCTAAAAATTTAAAAATATGTTAAATCTCTTTTTGGTGAATAAATACTTAAATAGAGTGGGTTTTTCCTTTTTCTTCCTTTCTTCTTTGGGAATAAGATTATGTTATGAAAGTTAGCCCTCCCAAATACTATAACTTTGTTTGGCAAAAAGATTCCAATTCTAAATGATAGGTACAAAATGCTATAGAAGTCAAACATTTTAATTATTGCAATAAGTCTATAAATTTAACTTATATGTTACTAATTCTTTACGGCCATCAAAGGGTTGATGATAACATCAATGACGTGTGTGTGTGCATATATATATATATATATATATATATGATGTAGTTTTTTTTCTTTTGTTATTCTTATTTCTATCCACTTGAATTAAAATAGACTTTAAAACATATAGGATAGAAGATTATGTTAAAATATAAGCTTGTCTTTGTATTATCTTTAAACCTTAAAGAGTATATGATAGTAATAGTTTTTCAATCTTCAATTTTATATTTCAAATCTCTCTCTAACATTTCAAAATGTCTAATAAGCGTTGAGCTTTTTCTTTTGTCTACTAGATTCATAATAATTAAAAATTTTCTAACTAATTAATATCTTATTTATAAAATTAAATTTTATGTGTACATACAGGAATATAATTTAAACTTTAAATTAAAAAAATCTATCAAAAAATAAAAAATTTAAGTAACTATCAAACAAAATTTAATGTATAGGGACCAAAATAGATATAAATTAGTGATGTTTTCAACAATAGAAAAACGGTTGAAAATAATTACAAATAGAACAAAATTTTAGTTTCTATTTGTGATTGTTGTATTTGTAAATAGTTTGATATTTTTTCTATTTATAATAATTTTTCTATAAAACTAAAGATTAAAAGACTATTTGGACCTTGTACTTCGGAATTCATTTTAATTTAGTTTTTATTCTTTCAAGTGTCCAAACTTACCCCTCGTAATTTCAATAAATATTAGATCTGTTCCTTCAATGTTTTCAATTTCTTTTAAAAGAAAAATTAGAATAATATTTTTTATGTAAGAAAATATCATATGGGTGTGAACATGTTTTCAAAATGTGTAAAAATTATGCTAATAAAAATTAATATTTCTTTCGATAAAGTAACTAGATCTATTAAAAATATTTAAACTAAAATTGAATATTTAAAAATTCAGAATCTATAATAAAATAAAATTCAAAGTCATTTTAACCTAAATCAAAATTTCAAAACTTCATAGAAGAAACTTGTAATGGAAGCAATTTAAGTCGGTCTTATGGATGGAATGTTTGTTTGATGTGATGACAGATAGAAGAGTTTGCTAAAAGTATAGAGGATTATCCATTGCATTCCAATGGAATGATCAAAGCTCCAAAAGTTCTAGCCGACATTGTTGAATCAACCATTGGAGCAGTTTTTGCTGATAGCAACTCCATTGACACGGTTGGAAGGTAATTATAATTTGCTGGTAAATCTCAGATTACACTTATTTTTATTTTTATGTAGTCCATCCAATTATATTCTATTAATGTCTATTACGTGATAAACTTTTGCTTTTATATTCTTTTTAAAAAAGATATTGATAAAATTGCCTTTTTGGTCCCATGTTTTTGAAGATTAGATATAGTTGGTTCTAGAAATTTTAAAATATACCTTTTTAGTCCTCGAGTATTTTGAAATAAGTATATATGATTCTTGTGTTTTTAAAATATACATGTTTAGTCTCAAAGTTTGAAGAGAACAATTTTAAAATGTTCTTGACATATATATATATATATATATATATATATATATATATATATTTGAAAACTCAAGGACCAAATATTACATATACTACAAATCTTGAGGACTAAAAAGACAATTTTTCCAAAACTATTTAAGAGGGATGCATGAGGATGAGTGGAATCTAGGCTACACTTAAGTATTGCTCGTTATTAACCGATAATAATCATTAGTTTGAATTATATATTTAAAAATGATGGTGATTTGTGTAGATATTTAAGGATTTAATGGAGCCATTGATAACGTTGAATACTATGAAGAAACATCCAATGACAGAGTTGACAGAAATATGTCAAAAGAGAAATCTAAAGTTGGAATTTGTGGATCGTTGGGAAGAAACAAAAGAGATTGAAGTTTTCATTGACAAACAACCTGTAGGAAAAGGAAGCTATCGCAAAAAGCTTATTGCGCAAAATAGAGCTGCAAAAGATGCTTTGGACAACTTGGACAGAGTTCTTGGGGAATTTAATCAACCTTGTCAACCTATGTAA

mRNA sequence

ATGGAAGAAATCGAGCAGAGAGTCGACTTATTGAAAGAGGAAGGCAGCAGCGGCGGAGAGGCGGTCAACGGCGGCGATTCGGCGGCGAGTCTGGACGGAATTGAAGCGATTCTGAACTACGAGTTTCGAGACAAAAGATTACTGGAGGAGGCTTTTACAGACGCATCGTATTCACCGGAAAATTGCTCGTCGTTCGAGCGATTGGAGTATGTCGGAGATTCGGTGTTGAATTTTCTGATAACGAGAGAACAATATTTCTCGAATCCGAATCTGTCGCCGGGTTCCCTGACTCGGCTCCGAGCGGCGAATGTGGACACGGAAAAGCTTGCTCGAGTTGCAATTACGCATGGATTTCATCGATATCTTCGCCACAACAAACCTGATCTTCATCAAAAAATAGAAGAGTTTGCTAAAAGTATAGAGGATTATCCATTGCATTCCAATGGAATGATCAAAGCTCCAAAAGTTCTAGCCGACATTGTTGAATCAACCATTGGAGCAGTTTTTGCTGATAGCAACTCCATTGACACGATATTTAAGGATTTAATGGAGCCATTGATAACGTTGAATACTATGAAGAAACATCCAATGACAGAGTTGACAGAAATATGTCAAAAGAGAAATCTAAAGTTGGAATTTGTGGATCGTTGGGAAGAAACAAAAGAGATTGAAGTTTTCATTGACAAACAACCTGTAGGAAAAGGAAGCTATCGCAAAAAGCTTATTGCGCAAAATAGAGCTGCAAAAGATGCTTTGGACAACTTGGACAGAGTTCTTGGGGAATTTAATCAACCTTGTCAACCTATGTAA

Coding sequence (CDS)

ATGGAAGAAATCGAGCAGAGAGTCGACTTATTGAAAGAGGAAGGCAGCAGCGGCGGAGAGGCGGTCAACGGCGGCGATTCGGCGGCGAGTCTGGACGGAATTGAAGCGATTCTGAACTACGAGTTTCGAGACAAAAGATTACTGGAGGAGGCTTTTACAGACGCATCGTATTCACCGGAAAATTGCTCGTCGTTCGAGCGATTGGAGTATGTCGGAGATTCGGTGTTGAATTTTCTGATAACGAGAGAACAATATTTCTCGAATCCGAATCTGTCGCCGGGTTCCCTGACTCGGCTCCGAGCGGCGAATGTGGACACGGAAAAGCTTGCTCGAGTTGCAATTACGCATGGATTTCATCGATATCTTCGCCACAACAAACCTGATCTTCATCAAAAAATAGAAGAGTTTGCTAAAAGTATAGAGGATTATCCATTGCATTCCAATGGAATGATCAAAGCTCCAAAAGTTCTAGCCGACATTGTTGAATCAACCATTGGAGCAGTTTTTGCTGATAGCAACTCCATTGACACGATATTTAAGGATTTAATGGAGCCATTGATAACGTTGAATACTATGAAGAAACATCCAATGACAGAGTTGACAGAAATATGTCAAAAGAGAAATCTAAAGTTGGAATTTGTGGATCGTTGGGAAGAAACAAAAGAGATTGAAGTTTTCATTGACAAACAACCTGTAGGAAAAGGAAGCTATCGCAAAAAGCTTATTGCGCAAAATAGAGCTGCAAAAGATGCTTTGGACAACTTGGACAGAGTTCTTGGGGAATTTAATCAACCTTGTCAACCTATGTAA

Protein sequence

MEEIEQRVDLLKEEGSSGGEAVNGGDSAASLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKPDLHQKIEEFAKSIEDYPLHSNGMIKAPKVLADIVESTIGAVFADSNSIDTIFKDLMEPLITLNTMKKHPMTELTEICQKRNLKLEFVDRWEETKEIEVFIDKQPVGKGSYRKKLIAQNRAAKDALDNLDRVLGEFNQPCQPM

Homology

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BLAST of ClCG02G002110 vs. NCBI nr
Match: XP_038888348.1 (ribonuclease 3-like protein 3 [Benincasa hispida])

HSP 1 Score: 492.3 bits (1266), Expect = 2.7e-135
Identity = 254/273 (93.04%), Postives = 259/273 (94.87%), Query Frame = 0


Query: 1   MEEIEQRVDLLKEEGSS-GGEAVNGGDSAASLDGIEAILNYEFRDKRLLEEAFTDASYSP 60
           MEE EQRV  L+EEGSS GGEAVNGGDSAASLDGIEAILNYEFRDKRLLEEAFTDASYSP
Sbjct: 1   MEEEEQRVVFLEEEGSSGGGEAVNGGDSAASLDGIEAILNYEFRDKRLLEEAFTDASYSP 60

Query: 61  ENCSSFERLEYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFH 120
           ENCSSFERLEYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFH
Sbjct: 61  ENCSSFERLEYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFH 120

Query: 121 RYLRHNKPDLHQKIEEFAKSIEDYPLHSNGMIKAPKVLADIVESTIGAVFADSNSIDT-- 180
           RYLRHNKPDLH KIEEF KSIEDYPLHSNGMIKAPKVLADIVESTIGAVFADSNSI+T  
Sbjct: 121 RYLRHNKPDLHPKIEEFIKSIEDYPLHSNGMIKAPKVLADIVESTIGAVFADSNSIETVW 180

Query: 181 -IFKDLMEPLITLNTMKKHPMTELTEICQKRNLKLEFVDRWEETKEIEVFIDKQPVGKGS 240
            IFKDLMEPLITL TMKKHPMTELTEICQKRNL LEFVD WEE KE++VFIDKQ VGKGS
Sbjct: 181 KIFKDLMEPLITLKTMKKHPMTELTEICQKRNLNLEFVDCWEERKEVQVFIDKQLVGKGS 240

Query: 241 YRKKLIAQNRAAKDALDNLDRVLGEFNQPCQPM 270
           YRKKLIAQNRAAKDAL+NLDRVLGEFNQPCQPM
Sbjct: 241 YRKKLIAQNRAAKDALNNLDRVLGEFNQPCQPM 273

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BLAST of ClCG02G002110 vs. NCBI nr
Match: XP_004144598.1 (ribonuclease 3-like protein 3 [Cucumis sativus] >KGN43500.1 hypothetical protein Csa_020414 [Cucumis sativus])

HSP 1 Score: 461.5 bits (1186), Expect = 5.1e-126
Identity = 239/275 (86.91%), Postives = 253/275 (92.00%), Query Frame = 0


Query: 1   MEEIEQRVDLLK-EEGS--SGGEAVNGGDSAASLDGIEAILNYEFRDKRLLEEAFTDASY 60
           MEE ++RVD L+ ++GS   GGEAVNG DS ASLDGIEAILNYEFRDKRLLEEAFTDASY
Sbjct: 1   MEEGKKRVDFLEGKDGSRGGGGEAVNGSDSPASLDGIEAILNYEFRDKRLLEEAFTDASY 60

Query: 61  SPENCSSFERLEYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHG 120
           SPENCSSFERLEYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHG
Sbjct: 61  SPENCSSFERLEYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHG 120

Query: 121 FHRYLRHNKPDLHQKIEEFAKSIEDYPLHSNGMIKAPKVLADIVESTIGAVFADSNSIDT 180
           FHRYLRHNK DLHQKIEEF +SIE+YPLHSNGMIKAPKVLADIVESTIGAVFADSN IDT
Sbjct: 121 FHRYLRHNKADLHQKIEEFGRSIEEYPLHSNGMIKAPKVLADIVESTIGAVFADSNFIDT 180

Query: 181 ---IFKDLMEPLITLNTMKKHPMTELTEICQKRNLKLEFVDRWEETKEIEVFIDKQPVGK 240
              IFK+LMEPLITL TMKKHPMTELTE+CQKR+LKLEF DRWEETKEIEV I+KQ VGK
Sbjct: 181 VWKIFKELMEPLITLKTMKKHPMTELTEMCQKRSLKLEFRDRWEETKEIEVLIEKQVVGK 240

Query: 241 GSYRKKLIAQNRAAKDALDNLDRVLGEFNQPCQPM 270
           GSYRKKLIAQNRAAK+AL+NLD    +FNQPCQPM
Sbjct: 241 GSYRKKLIAQNRAAKNALENLDTFFPQFNQPCQPM 275

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BLAST of ClCG02G002110 vs. NCBI nr
Match: XP_022969213.1 (ribonuclease 3-like protein 3 [Cucurbita maxima])

HSP 1 Score: 436.4 bits (1121), Expect = 1.8e-118
Identity = 224/265 (84.53%), Postives = 236/265 (89.06%), Query Frame = 0


Query: 8   VDLLKEEGSSGGEAVNGGDSAASLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFER 67
           VDLLK+EG        G  +AASLDG+EAILNYEFRDKRLLEEAFTDASYSPENCSSFER
Sbjct: 8   VDLLKQEGRV------GESTAASLDGMEAILNYEFRDKRLLEEAFTDASYSPENCSSFER 67

Query: 68  LEYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKP 127
           LEYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNK 
Sbjct: 68  LEYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKA 127

Query: 128 DLHQKIEEFAKSIEDYPLHSNGMIKAPKVLADIVESTIGAVFADSNSID---TIFKDLME 187
           DL QKIEEF+K+IE+YPLHSNGMIKAPK+LADIVES IGAVF DSNSID   TIFK LME
Sbjct: 128 DLDQKIEEFSKNIEEYPLHSNGMIKAPKILADIVESCIGAVFTDSNSIDTVWTIFKGLME 187

Query: 188 PLITLNTMKKHPMTELTEICQKRNLKLEFVDRWEETKEIEVFIDKQPVGKGSYRKKLIAQ 247
           PLITL TMK+HPMTELTE+CQKRNLK EFVD WEE KEI V IDKQ VGKGSY KKLIAQ
Sbjct: 188 PLITLKTMKRHPMTELTEMCQKRNLKWEFVDLWEERKEIHVLIDKQLVGKGSYGKKLIAQ 247

Query: 248 NRAAKDALDNLDRVLGEFNQPCQPM 270
           NRAAKDALDN   +LG+FN+PCQPM
Sbjct: 248 NRAAKDALDNFHTILGQFNEPCQPM 266

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BLAST of ClCG02G002110 vs. NCBI nr
Match: KAG6572281.1 (Endoribonuclease Dicer-like 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 435.6 bits (1119), Expect = 3.0e-118
Identity = 226/272 (83.09%), Postives = 241/272 (88.60%), Query Frame = 0


Query: 1   MEEIEQRVDLLKEEGSSGGEAVNGGDSAASLDGIEAILNYEFRDKRLLEEAFTDASYSPE 60
           ME    R DLLK+EG  GGE+     +AASLDG+EAILNYEFRDKRLLEEAFTDASYSPE
Sbjct: 1   MEGRGDRGDLLKQEG-RGGES-----TAASLDGMEAILNYEFRDKRLLEEAFTDASYSPE 60

Query: 61  NCSSFERLEYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHR 120
           NCSSFERLEYVGDSVLNFLITREQYFSNPNLSPG+LTRLRAANVDTEKLARVAITHGFHR
Sbjct: 61  NCSSFERLEYVGDSVLNFLITREQYFSNPNLSPGTLTRLRAANVDTEKLARVAITHGFHR 120

Query: 121 YLRHNKPDLHQKIEEFAKSIEDYPLHSNGMIKAPKVLADIVESTIGAVFADSNSID---T 180
           YLRHNK DL QKIEEF+K+IE+YPLHSNG+IKAPK+LADIVES IGAVF DSNSID   T
Sbjct: 121 YLRHNKADLDQKIEEFSKNIEEYPLHSNGLIKAPKILADIVESCIGAVFTDSNSIDTVWT 180

Query: 181 IFKDLMEPLITLNTMKKHPMTELTEICQKRNLKLEFVDRWEETKEIEVFIDKQPVGKGSY 240
           IFK LMEPLITL TMK+HPMTELTE+CQKRNLK EFVD WEE KEI V IDKQ VGKGSY
Sbjct: 181 IFKGLMEPLITLKTMKRHPMTELTEMCQKRNLKWEFVDLWEERKEIHVLIDKQLVGKGSY 240

Query: 241 RKKLIAQNRAAKDALDNLDRVLGEFNQPCQPM 270
            KKLIAQNRAAKDALDN   +LG+FN+PCQPM
Sbjct: 241 GKKLIAQNRAAKDALDNFHTILGQFNEPCQPM 266

[Close]

BLAST of ClCG02G002110 vs. NCBI nr
Match: KAG7011897.1 (Ribonuclease 3-like protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 434.5 bits (1116), Expect = 6.7e-118
Identity = 223/264 (84.47%), Postives = 238/264 (90.15%), Query Frame = 0


Query: 9   DLLKEEGSSGGEAVNGGDSAASLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERL 68
           DLLK+EG  GGE+     +AASLDG+EAILNYEFRDKRLLEEAFTDASYSPENCSSFERL
Sbjct: 9   DLLKQEG-RGGES-----TAASLDGMEAILNYEFRDKRLLEEAFTDASYSPENCSSFERL 68

Query: 69  EYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKPD 128
           EYVGDSVLNFLITREQYFSNPNLSPG+LTRLRAANVDTEKLARVAITHGFHRYLRHNK D
Sbjct: 69  EYVGDSVLNFLITREQYFSNPNLSPGTLTRLRAANVDTEKLARVAITHGFHRYLRHNKAD 128

Query: 129 LHQKIEEFAKSIEDYPLHSNGMIKAPKVLADIVESTIGAVFADSNSID---TIFKDLMEP 188
           L QKIEEF+K+IE+YPLHSNG+IKAPK+LADIVES IGAVF DSNSID   TIFK LMEP
Sbjct: 129 LDQKIEEFSKNIEEYPLHSNGLIKAPKILADIVESCIGAVFTDSNSIDTVWTIFKGLMEP 188

Query: 189 LITLNTMKKHPMTELTEICQKRNLKLEFVDRWEETKEIEVFIDKQPVGKGSYRKKLIAQN 248
           LITL TMK+HPMTELTE+CQKRNLK EFVD WEE KEI V IDKQ VGKGSY KKLIAQN
Sbjct: 189 LITLKTMKRHPMTELTEMCQKRNLKWEFVDLWEERKEIHVLIDKQLVGKGSYGKKLIAQN 248

Query: 249 RAAKDALDNLDRVLGEFNQPCQPM 270
           RAAKDALDN   +LG+FN+PCQPM
Sbjct: 249 RAAKDALDNFHTILGQFNEPCQPM 266

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BLAST of ClCG02G002110 vs. ExPASy Swiss-Prot
Match: Q69KJ0 (Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0358800 PE=2 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.6e-58
Identity = 118/236 (50.00%), Postives = 162/236 (68.64%), Query Frame = 0


Query: 34  IEAILNYEFRDKRLLEEAFTDAS--YSPENCSSFERLEYVGDSVLNFLITREQYFSNPNL 93
           +E++L YEFRDK L+EEA T  S  Y      ++ERLEY+GD+VL  +++RE + +   L
Sbjct: 42  VESLLGYEFRDKALVEEALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSREVFLTYGQL 101

Query: 94  SPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKPDLHQKIEEFAKSIEDYPLHSNGMI 153
            PG LTRLRAANVD EKLARVA+ HG H +LRH  P+L  +I +F + +  YP+HSNG++
Sbjct: 102 QPGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIEELSMYPIHSNGLL 161

Query: 154 KAPKVLADIVESTIGAVFADSN----SIDTIFKDLMEPLITLNTMKKHPMTELTEICQKR 213
             PKVL D+VES IGA++ DSN     +  +F+ L +PLI+L T+ KHP++EL E CQK 
Sbjct: 162 DPPKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLGKHPVSELFEFCQKT 221

Query: 214 NLKLEFV-DRWEETKEIEVFIDKQPVGKGSY-RKKLIAQNRAAKDALDNLDRVLGE 262
              ++ V D W++   +EV ID + VG+ +Y +KK IAQNRAAK ALD L   LG+
Sbjct: 222 RRGVKIVKDEWDKNLTVEVLIDGEMVGRATYAQKKEIAQNRAAKAALDKLKETLGQ 277

[Close]

BLAST of ClCG02G002110 vs. ExPASy Swiss-Prot
Match: Q9SP32 (Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana OX=3702 GN=DCL1 PE=1 SV=2)

HSP 1 Score: 173.7 bits (439), Expect = 2.8e-42
Identity = 102/231 (44.16%), Postives = 137/231 (59.31%), Query Frame = 0


Query: 33   GIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITREQYFSNPNLS 92
            G+E  L YEF++K LL EA T AS      S ++RLE+VGD+VL+ LITR  +F+  +L 
Sbjct: 1561 GLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLP 1620

Query: 93   PGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKPDLHQKIEEFAKSIE------DYPLH 152
            PG LT LRAA V+ E  ARVA+ H  H YLRH    L ++I EF K ++       +   
Sbjct: 1621 PGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSF 1680

Query: 153  SNGMIKAPKVLADIVESTIGAVFADSNSIDT----IFKDLMEPLITLNTMKKHPMTELTE 212
              G  KAPKVL DIVES  GA+F DS    T    +F+ L++P++T  T+  HP+ EL E
Sbjct: 1681 GLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQE 1740

Query: 213  ICQKRNLKLEF-VDRWEETKEIEVFIDKQPVGKGSYRKKLIAQNRAAKDAL 253
             CQ++   LE+   R   T  +EVFID   VG     +K +AQ  AA++AL
Sbjct: 1741 RCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNAL 1791

[Close]

BLAST of ClCG02G002110 vs. ExPASy Swiss-Prot
Match: Q9LTQ0 (Ribonuclease 3-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=RTL2 PE=1 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.6e-40
Identity = 93/240 (38.75%), Postives = 151/240 (62.92%), Query Frame = 0


Query: 30  SLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITREQYFSNP 89
           S++ +E ILNY+F +K LL+EA T  S +  +  S+ERLE++GDS +   I+   Y + P
Sbjct: 59  SMEAVEKILNYKFSNKSLLKEAITHTSCT--DFPSYERLEFIGDSAIGLAISNYLYLTYP 118

Query: 90  NLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKPDLHQKIEEFAKSI---EDYPLH 149
           +L P  L+ LRAANV TEKLARV++ HG + +LR N P L +K++EF++++   +D  + 
Sbjct: 119 SLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKEDDLSVS 178

Query: 150 SNGMIKAPKVLADIVESTIGAVFADSN----SIDTIFKDLMEPLITLNTMKK--HPMTEL 209
             G++KAPKVLAD+ ES  GAV+ D N     +  IF+ L+EP++TL+ ++K   P++ L
Sbjct: 179 YGGLVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQPVSML 238

Query: 210 TEICQKRNLKLEFVDRWEE--TKEIEVFIDKQPVGKGSYRKKLIAQNRAAKDALDNLDRV 259
            ++C K   +++ +  W++       +++D + +  G    K IA+  AAK+AL  L  V
Sbjct: 239 FKLCHKHKKRID-IKNWKDGNVSIAVIYLDDELLASGRAENKDIARLIAAKEALRKLSEV 295

[Close]

BLAST of ClCG02G002110 vs. ExPASy Swiss-Prot
Match: Q8LMR2 (Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=DCL1 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.9e-39
Identity = 96/234 (41.03%), Postives = 137/234 (58.55%), Query Frame = 0


Query: 30   SLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITREQYFSNP 89
            + D ++ +L  EF++K LL EA T AS      S ++RLE+VGD+VL+ LITR  +F+  
Sbjct: 1537 NFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYT 1596

Query: 90   NLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKPDLHQKIEEFAKSIEDYPLHSN- 149
            +L PG LT LRAA V+ E  ARVA+ H  H +LRH    L  +I EF K +++  L    
Sbjct: 1597 DLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELLKPGF 1656

Query: 150  -----GMIKAPKVLADIVESTIGAVFADS----NSIDTIFKDLMEPLITLNTMKKHPMTE 209
                 G  KAPKVL DIVES  GA+F DS    + +  +F+ L+ P++T  T+  HP+ E
Sbjct: 1657 NSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMHPVRE 1716

Query: 210  LTEICQKRNLKLEF-VDRWEETKEIEVFIDKQPVGKGSYRKKLIAQNRAAKDAL 253
            L E CQ++   LE+   R      +EVF+D   +G     +K +AQ  AA++AL
Sbjct: 1717 LQERCQQQAEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLAARNAL 1770

[Close]

BLAST of ClCG02G002110 vs. ExPASy Swiss-Prot
Match: Q6ATG6 (Ribonuclease 3-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0271300 PE=2 SV=2)

HSP 1 Score: 161.8 bits (408), Expect = 1.1e-38
Identity = 97/243 (39.92%), Postives = 144/243 (59.26%), Query Frame = 0


Query: 26  DSAASLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITREQY 85
           D A +   +E +L Y+FRD RLLEEA T  S++ ++  S++RLE+VGDS L    +   Y
Sbjct: 32  DRAEAAARVERLLRYQFRDGRLLEEALTHQSFA-DDAVSYQRLEFVGDSALGLAFSNFLY 91

Query: 86  FSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKPDLHQKIEEFAKSIEDYP- 145
            +NP L PG L+ LRAAN+ TEKLARVA+ H  +  LR N P L   + +F ++++  P 
Sbjct: 92  LTNPTLGPGPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIETVKQEPE 151

Query: 146 ------LHSNGMIKAPKVLADIVESTIGAVFADSN-SIDTIFKD---LMEPLITLNTMKK 205
                  +   ++KAPKVLADIVE+   AV+ D    ++ ++K    L EP+IT  T+ +
Sbjct: 152 DDLSTVPYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPIITAETIDE 211

Query: 206 HPMTELTEICQKRNLKLEFVDRWEE--TKEIEVFIDKQPVGKGSYRKKLIAQNRAAKDAL 256
            P+T L E+CQK     +F   W++     + VF+  + VG GS  +K+IA+  AA+DA 
Sbjct: 212 QPVTMLHELCQKHGKMAQF-KTWQKGGMTVVNVFVAGELVGIGSSEQKVIAKLNAARDAT 271

[Close]

BLAST of ClCG02G002110 vs. ExPASy TrEMBL
Match: A0A0A0K1J8 (RNase III domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G041940 PE=4 SV=1)

HSP 1 Score: 461.5 bits (1186), Expect = 2.5e-126
Identity = 239/275 (86.91%), Postives = 253/275 (92.00%), Query Frame = 0


Query: 1   MEEIEQRVDLLK-EEGS--SGGEAVNGGDSAASLDGIEAILNYEFRDKRLLEEAFTDASY 60
           MEE ++RVD L+ ++GS   GGEAVNG DS ASLDGIEAILNYEFRDKRLLEEAFTDASY
Sbjct: 1   MEEGKKRVDFLEGKDGSRGGGGEAVNGSDSPASLDGIEAILNYEFRDKRLLEEAFTDASY 60

Query: 61  SPENCSSFERLEYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHG 120
           SPENCSSFERLEYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHG
Sbjct: 61  SPENCSSFERLEYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHG 120

Query: 121 FHRYLRHNKPDLHQKIEEFAKSIEDYPLHSNGMIKAPKVLADIVESTIGAVFADSNSIDT 180
           FHRYLRHNK DLHQKIEEF +SIE+YPLHSNGMIKAPKVLADIVESTIGAVFADSN IDT
Sbjct: 121 FHRYLRHNKADLHQKIEEFGRSIEEYPLHSNGMIKAPKVLADIVESTIGAVFADSNFIDT 180

Query: 181 ---IFKDLMEPLITLNTMKKHPMTELTEICQKRNLKLEFVDRWEETKEIEVFIDKQPVGK 240
              IFK+LMEPLITL TMKKHPMTELTE+CQKR+LKLEF DRWEETKEIEV I+KQ VGK
Sbjct: 181 VWKIFKELMEPLITLKTMKKHPMTELTEMCQKRSLKLEFRDRWEETKEIEVLIEKQVVGK 240

Query: 241 GSYRKKLIAQNRAAKDALDNLDRVLGEFNQPCQPM 270
           GSYRKKLIAQNRAAK+AL+NLD    +FNQPCQPM
Sbjct: 241 GSYRKKLIAQNRAAKNALENLDTFFPQFNQPCQPM 275

[Close]

BLAST of ClCG02G002110 vs. ExPASy TrEMBL
Match: A0A6J1I0C1 (ribonuclease 3-like protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111468279 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 8.5e-119
Identity = 224/265 (84.53%), Postives = 236/265 (89.06%), Query Frame = 0


Query: 8   VDLLKEEGSSGGEAVNGGDSAASLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFER 67
           VDLLK+EG        G  +AASLDG+EAILNYEFRDKRLLEEAFTDASYSPENCSSFER
Sbjct: 8   VDLLKQEGRV------GESTAASLDGMEAILNYEFRDKRLLEEAFTDASYSPENCSSFER 67

Query: 68  LEYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKP 127
           LEYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNK 
Sbjct: 68  LEYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKA 127

Query: 128 DLHQKIEEFAKSIEDYPLHSNGMIKAPKVLADIVESTIGAVFADSNSID---TIFKDLME 187
           DL QKIEEF+K+IE+YPLHSNGMIKAPK+LADIVES IGAVF DSNSID   TIFK LME
Sbjct: 128 DLDQKIEEFSKNIEEYPLHSNGMIKAPKILADIVESCIGAVFTDSNSIDTVWTIFKGLME 187

Query: 188 PLITLNTMKKHPMTELTEICQKRNLKLEFVDRWEETKEIEVFIDKQPVGKGSYRKKLIAQ 247
           PLITL TMK+HPMTELTE+CQKRNLK EFVD WEE KEI V IDKQ VGKGSY KKLIAQ
Sbjct: 188 PLITLKTMKRHPMTELTEMCQKRNLKWEFVDLWEERKEIHVLIDKQLVGKGSYGKKLIAQ 247

Query: 248 NRAAKDALDNLDRVLGEFNQPCQPM 270
           NRAAKDALDN   +LG+FN+PCQPM
Sbjct: 248 NRAAKDALDNFHTILGQFNEPCQPM 266

[Close]

BLAST of ClCG02G002110 vs. ExPASy TrEMBL
Match: A0A6J1GKQ4 (ribonuclease 3-like protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111455247 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 1.6e-117
Identity = 222/264 (84.09%), Postives = 237/264 (89.77%), Query Frame = 0


Query: 9   DLLKEEGSSGGEAVNGGDSAASLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERL 68
           DLLK+EG  GGE+     +AASLDG+EAIL YEFRDKRLLEEAFTDASYSPENCSSFERL
Sbjct: 9   DLLKQEG-RGGES-----TAASLDGMEAILKYEFRDKRLLEEAFTDASYSPENCSSFERL 68

Query: 69  EYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKPD 128
           EYVGDSVLNFLITREQYFSNPNLSPG+LTRLRAANVDTEKLARVAITHGFHRYLRHNK D
Sbjct: 69  EYVGDSVLNFLITREQYFSNPNLSPGTLTRLRAANVDTEKLARVAITHGFHRYLRHNKAD 128

Query: 129 LHQKIEEFAKSIEDYPLHSNGMIKAPKVLADIVESTIGAVFADSNSID---TIFKDLMEP 188
           L QKIEEF+K+IE+YPLHSNG+IKAPK+LADIVES IGAVF DSNSID   TIFK LMEP
Sbjct: 129 LDQKIEEFSKNIEEYPLHSNGLIKAPKILADIVESCIGAVFTDSNSIDTVWTIFKGLMEP 188

Query: 189 LITLNTMKKHPMTELTEICQKRNLKLEFVDRWEETKEIEVFIDKQPVGKGSYRKKLIAQN 248
           LITL TMK+HPMTELTE+CQKRNLK EFVD WEE KEI V IDKQ VGKGSY KKLIAQN
Sbjct: 189 LITLKTMKRHPMTELTEMCQKRNLKWEFVDLWEERKEIHVLIDKQLVGKGSYGKKLIAQN 248

Query: 249 RAAKDALDNLDRVLGEFNQPCQPM 270
           RAAKDALDN   +LG+FN+PCQPM
Sbjct: 249 RAAKDALDNFHTILGQFNEPCQPM 266

[Close]

BLAST of ClCG02G002110 vs. ExPASy TrEMBL
Match: A0A6J1C375 (ribonuclease 3-like protein 3 OS=Momordica charantia OX=3673 GN=LOC111007843 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.6e-112
Identity = 206/247 (83.40%), Postives = 228/247 (92.31%), Query Frame = 0


Query: 26  DSAASLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITREQY 85
           +S  SL+ +EAIL YEFRDKRLLEEAFTD+SYSPENC SFERLEYVGDSVLNFLITREQY
Sbjct: 34  ESPPSLEEVEAILGYEFRDKRLLEEAFTDSSYSPENCFSFERLEYVGDSVLNFLITREQY 93

Query: 86  FSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKPDLHQKIEEFAKSIEDYPL 145
           FSNP+LSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNK DL +KIEEFA+ +++YPL
Sbjct: 94  FSNPSLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKSDLDKKIEEFAEGMKEYPL 153

Query: 146 HSNGMIKAPKVLADIVESTIGAVFADSNSID---TIFKDLMEPLITLNTMKKHPMTELTE 205
           HSNG+IKAPK+LADIVESTIGAVF DSNS+D   TIF+ LMEPLITL T+K+HPMTELTE
Sbjct: 154 HSNGLIKAPKILADIVESTIGAVFTDSNSMDTVWTIFRGLMEPLITLKTIKRHPMTELTE 213

Query: 206 ICQKRNLKLEFVDRWEETKEIEVFIDKQPVGKGSYRKKLIAQNRAAKDALDNLDRVLGEF 265
           ICQKRNLKLEFVD WE+TKE++VFIDKQ VGKGSYRKKLIAQNRAAKDAL+NLD +L + 
Sbjct: 214 ICQKRNLKLEFVDSWEKTKEVQVFIDKQLVGKGSYRKKLIAQNRAAKDALNNLDTLLVQI 273

Query: 266 NQPCQPM 270
           NQPCQPM
Sbjct: 274 NQPCQPM 280

[Close]

BLAST of ClCG02G002110 vs. ExPASy TrEMBL
Match: A0A1Q3BNT8 (Ribonuclease_3 domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_13208 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 3.9e-79
Identity = 156/237 (65.82%), Postives = 192/237 (81.01%), Query Frame = 0


Query: 31  LDGIEAILNYEFRDKRLLEEAFTDASY-SPENCSSFERLEYVGDSVLNFLITREQYFSNP 90
           L+G+E IL Y+F +K LLEEAFT ASY SP+ C+S+ERLE+VGDSVLN L T+EQYF  P
Sbjct: 1   LEGVEEILGYKFGNKSLLEEAFTHASYTSPDQCASYERLEFVGDSVLNLLFTKEQYFLYP 60

Query: 91  NLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKPDLHQKIEEFAKSIEDYPLHSNG 150
           NL PG LTRLRAANVDTEKLARV+I HG HRYL H KP L Q+I+EF ++I DYPLHSNG
Sbjct: 61  NLQPGDLTRLRAANVDTEKLARVSIRHGLHRYLCHKKPLLEQQIQEFTQAILDYPLHSNG 120

Query: 151 MIKAPKVLADIVESTIGAVFADSN-SID---TIFKDLMEPLITLNTMKKHPMTELTEICQ 210
           ++  PKVLADIVESTIGAVF DSN SID    +FK L+EP+I++ T+K+HP+TEL E+CQ
Sbjct: 121 LVDPPKVLADIVESTIGAVFIDSNLSIDIVWKVFKGLLEPIISVETLKRHPVTELYEVCQ 180

Query: 211 KRNLKLEFVDRWEETKEIEVFIDKQPVGKGSY-RKKLIAQNRAAKDALDNLDRVLGE 262
           K+NLK++FVD W+E+   EVFID Q VG+ +Y  KK IA NRAAKDAL+N+ ++L E
Sbjct: 181 KKNLKVKFVDLWKESTAFEVFIDDQLVGRDTYGTKKEIAHNRAAKDALNNMWKILNE 237

[Close]

BLAST of ClCG02G002110 vs. TAIR 10
Match: AT4G15417.1 (RNAse II-like 1 )

HSP 1 Score: 242.7 bits (618), Expect = 3.5e-64
Identity = 128/240 (53.33%), Postives = 167/240 (69.58%), Query Frame = 0


Query: 26  DSAASLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITREQY 85
           D    ++ +E ILNY+F+DK LL +AFTDASY  +   S+E LE +GDS+LN  I  +  
Sbjct: 24  DQLMEIESLEKILNYKFKDKSLLLKAFTDASYVDDKSESYELLELLGDSILNMGIIYDFI 83

Query: 86  FSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKPDLHQKIEEFAKSIEDYPL 145
              P  +PG LT+LRA NVDTEKLARVA+ H  + YLRH KP L ++I EF +++E YPL
Sbjct: 84  KLYPKEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFVEAMEKYPL 143

Query: 146 HSNGMIKAPKVLADIVESTIGAVFADSNSIDTIF---KDLMEPLITLNTMKKHPMTELTE 205
           HSNG++K PKVLADIVESTIGA+F D NS +T++   K L+EP+I L+ MK HPMTEL E
Sbjct: 144 HSNGLLKVPKVLADIVESTIGAIFMDCNSTETVWKVIKPLLEPIIHLDKMKSHPMTELNE 203

Query: 206 ICQKRNLKLEFVDRWEETKEIEVFIDKQPVGKGSYR-KKLIAQNRAAKDALDNLDRVLGE 262
           +CQKRNLKL   D WEE +     I+ + VG G +  KK  A+N AAK+A+DN  +  G+
Sbjct: 204 MCQKRNLKLTSKDTWEENQTYCFHIEDKFVGCGHHPVKKETARNFAAKNAIDNFAKFFGD 263

[Close]

BLAST of ClCG02G002110 vs. TAIR 10
Match: AT1G01040.1 (dicer-like 1 )

HSP 1 Score: 173.7 bits (439), Expect = 2.0e-43
Identity = 102/231 (44.16%), Postives = 137/231 (59.31%), Query Frame = 0


Query: 33   GIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITREQYFSNPNLS 92
            G+E  L YEF++K LL EA T AS      S ++RLE+VGD+VL+ LITR  +F+  +L 
Sbjct: 1561 GLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLP 1620

Query: 93   PGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKPDLHQKIEEFAKSIE------DYPLH 152
            PG LT LRAA V+ E  ARVA+ H  H YLRH    L ++I EF K ++       +   
Sbjct: 1621 PGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSF 1680

Query: 153  SNGMIKAPKVLADIVESTIGAVFADSNSIDT----IFKDLMEPLITLNTMKKHPMTELTE 212
              G  KAPKVL DIVES  GA+F DS    T    +F+ L++P++T  T+  HP+ EL E
Sbjct: 1681 GLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQE 1740

Query: 213  ICQKRNLKLEF-VDRWEETKEIEVFIDKQPVGKGSYRKKLIAQNRAAKDAL 253
             CQ++   LE+   R   T  +EVFID   VG     +K +AQ  AA++AL
Sbjct: 1741 RCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNAL 1791

[Close]

BLAST of ClCG02G002110 vs. TAIR 10
Match: AT1G01040.2 (dicer-like 1 )

HSP 1 Score: 173.7 bits (439), Expect = 2.0e-43
Identity = 102/231 (44.16%), Postives = 137/231 (59.31%), Query Frame = 0


Query: 33   GIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITREQYFSNPNLS 92
            G+E  L YEF++K LL EA T AS      S ++RLE+VGD+VL+ LITR  +F+  +L 
Sbjct: 1562 GLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLP 1621

Query: 93   PGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKPDLHQKIEEFAKSIE------DYPLH 152
            PG LT LRAA V+ E  ARVA+ H  H YLRH    L ++I EF K ++       +   
Sbjct: 1622 PGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSF 1681

Query: 153  SNGMIKAPKVLADIVESTIGAVFADSNSIDT----IFKDLMEPLITLNTMKKHPMTELTE 212
              G  KAPKVL DIVES  GA+F DS    T    +F+ L++P++T  T+  HP+ EL E
Sbjct: 1682 GLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQE 1741

Query: 213  ICQKRNLKLEF-VDRWEETKEIEVFIDKQPVGKGSYRKKLIAQNRAAKDAL 253
             CQ++   LE+   R   T  +EVFID   VG     +K +AQ  AA++AL
Sbjct: 1742 RCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNAL 1792

[Close]

BLAST of ClCG02G002110 vs. TAIR 10
Match: AT3G20420.1 (RNAse THREE-like protein 2 )

HSP 1 Score: 167.2 bits (422), Expect = 1.9e-41
Identity = 93/240 (38.75%), Postives = 151/240 (62.92%), Query Frame = 0


Query: 30  SLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITREQYFSNP 89
           S++ +E ILNY+F +K LL+EA T  S +  +  S+ERLE++GDS +   I+   Y + P
Sbjct: 59  SMEAVEKILNYKFSNKSLLKEAITHTSCT--DFPSYERLEFIGDSAIGLAISNYLYLTYP 118

Query: 90  NLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKPDLHQKIEEFAKSI---EDYPLH 149
           +L P  L+ LRAANV TEKLARV++ HG + +LR N P L +K++EF++++   +D  + 
Sbjct: 119 SLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKEDDLSVS 178

Query: 150 SNGMIKAPKVLADIVESTIGAVFADSN----SIDTIFKDLMEPLITLNTMKK--HPMTEL 209
             G++KAPKVLAD+ ES  GAV+ D N     +  IF+ L+EP++TL+ ++K   P++ L
Sbjct: 179 YGGLVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQPVSML 238

Query: 210 TEICQKRNLKLEFVDRWEE--TKEIEVFIDKQPVGKGSYRKKLIAQNRAAKDALDNLDRV 259
            ++C K   +++ +  W++       +++D + +  G    K IA+  AAK+AL  L  V
Sbjct: 239 FKLCHKHKKRID-IKNWKDGNVSIAVIYLDDELLASGRAENKDIARLIAAKEALRKLSEV 295

[Close]

BLAST of ClCG02G002110 vs. TAIR 10
Match: AT3G03300.1 (dicer-like 2 )

HSP 1 Score: 133.7 bits (335), Expect = 2.3e-31
Identity = 79/187 (42.25%), Postives = 111/187 (59.36%), Query Frame = 0


Query: 34   IEAILNYEFRDKRLLEEAFTDASY-SPENCSSFERLEYVGDSVLNFLITREQYFSNPNLS 93
            +E++LNY F DK LL EA T  SY  PE    ++RLE++GDSVL++LIT+  Y   P LS
Sbjct: 1152 MESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLS 1211

Query: 94   PGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKPDLHQKIEEFAKSIEDYPLHS----N 153
            PG LT +R+A+V+ E  A VA+    H+++ +    LH+ I       E   L S     
Sbjct: 1212 PGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWE 1271

Query: 154  GMIKAPKVLADIVESTIGAVFADSN-SIDTIF---KDLMEPLITLNTMKKHPMTELTEIC 212
              I  PKVL D++ES  GA+F DS  + + +F   K L+  +IT  T+K HP+ ELTE+C
Sbjct: 1272 SDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELC 1331

The following BLAST results are available for this feature:

BLAST of ClCG02G002110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888348.1	2.7e-135	93.04	ribonuclease 3-like protein 3 [Benincasa hispida]	[more]
XP_004144598.1	5.1e-126	86.91	ribonuclease 3-like protein 3 [Cucumis sativus] >KGN43500.1 hypothetical protein...	[more]
XP_022969213.1	1.8e-118	84.53	ribonuclease 3-like protein 3 [Cucurbita maxima]	[more]
KAG6572281.1	3.0e-118	83.09	Endoribonuclease Dicer-like 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7011897.1	6.7e-118	84.47	Ribonuclease 3-like protein 3, partial [Cucurbita argyrosperma subsp. argyrosper...	[more]

BLAST of ClCG02G002110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q69KJ0	3.6e-58	50.00	Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0...	[more]
Q9SP32	2.8e-42	44.16	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana OX=3702 GN=DCL1 PE=1 SV...	[more]
Q9LTQ0	2.6e-40	38.75	Ribonuclease 3-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=RTL2 PE=1 SV=1	[more]
Q8LMR2	4.9e-39	41.03	Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=DCL...	[more]
Q6ATG6	1.1e-38	39.92	Ribonuclease 3-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0...	[more]

BLAST of ClCG02G002110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K1J8	2.5e-126	86.91	RNase III domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G041940 P...	[more]
A0A6J1I0C1	8.5e-119	84.53	ribonuclease 3-like protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111468279 PE=4 S...	[more]
A0A6J1GKQ4	1.6e-117	84.09	ribonuclease 3-like protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111455247 PE=4...	[more]
A0A6J1C375	1.6e-112	83.40	ribonuclease 3-like protein 3 OS=Momordica charantia OX=3673 GN=LOC111007843 PE=...	[more]
A0A1Q3BNT8	3.9e-79	65.82	Ribonuclease_3 domain-containing protein (Fragment) OS=Cephalotus follicularis O...	[more]

BLAST of ClCG02G002110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15417.1	3.5e-64	53.33	RNAse II-like 1	[more]
AT1G01040.1	2.0e-43	44.16	dicer-like 1	[more]
AT1G01040.2	2.0e-43	44.16	dicer-like 1	[more]
AT3G20420.1	1.9e-41	38.75	RNAse THREE-like protein 2	[more]
AT3G03300.1	2.3e-31	42.25	dicer-like 2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 238..258
None	No IPR available	GENE3D	3.30.160.20		coord: 195..260 e-value: 7.8E-9 score: 37.4
None	No IPR available	PANTHER	PTHR14950:SF54	RNASE II-LIKE 1	coord: 26..260
None	No IPR available	PANTHER	PTHR14950	DICER-RELATED	coord: 26..260
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 155..255
IPR014720	Double-stranded RNA-binding domain	SMART	SM00358	DRBM_3	coord: 196..256 e-value: 0.0084 score: 24.7
IPR014720	Double-stranded RNA-binding domain	PFAM	PF00035	dsrm	coord: 196..255 e-value: 6.6E-5 score: 23.6
IPR000999	Ribonuclease III domain	SMART	SM00535	riboneu5	coord: 46..192 e-value: 6.5E-28 score: 108.7
IPR000999	Ribonuclease III domain	PFAM	PF00636	Ribonuclease_3	coord: 66..172 e-value: 5.5E-22 score: 78.4
IPR000999	Ribonuclease III domain	PROSITE	PS00517	RNASE_3_1	coord: 66..74
IPR000999	Ribonuclease III domain	PROSITE	PS50142	RNASE_3_2	coord: 31..173 score: 33.77779
IPR000999	Ribonuclease III domain	CDD	cd00593	RIBOc	coord: 46..192 e-value: 2.98182E-37 score: 126.573
IPR036389	Ribonuclease III, endonuclease domain superfamily	GENE3D	1.10.1520.10	Ribonuclease III domain	coord: 27..194 e-value: 3.1E-47 score: 162.7
IPR036389	Ribonuclease III, endonuclease domain superfamily	SUPERFAMILY	69065	RNase III domain-like	coord: 31..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G002110.1	ClCG02G002110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030422	production of siRNA involved in RNA interference
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0004525	ribonuclease III activity
molecular_function	GO:0003723	RNA binding