ClCG02G001940 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G001940
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	protein RRP6-like 3 isoform X1
Location	CG_Chr02: 1969398 .. 1977098 (+)
RNA-Seq Expression	ClCG02G001940
Synteny	ClCG02G001940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAGCTCCCTCCAAATCAGAGAAACTCAGGCCAAACGAAAACGGAGGCCATTGATTCAAATGGAACTTCAACACAAGGTCAAAATCGCTCTAGTAGTAGCGTCTTTCGCAGCGCTTACGATCTTATTTACAACCAGACAGCGCAGGAAGCGAAGGAGCGTTCGTAGTTCGTGTTATTTACGAGATGATCAGAAGCCTCAGTGCGCATTTAAACGTGTTTTGGCCGACAATTCTTATTCTGCGTTCAAGCACTTGGAGCTCAATATGAATAAAGGTATAGATAGTCCGTTAGTTACTCTATTTCAAATTTGATTTTGTGTTTAGCTGCTGAGACTGACCGTGTTGTTTTTAGTAGCAAATGGAGTGTTTACTGAAGGAATGTTGTTTTTCATTTCCCCACGTCCTGTTGCTCCATGGAAAATATTCAGCTTGGTTAAGTTGAATATTTTCCATGGAGCAACAGGACGTGGGGAAATGGAAATCTCTGAAGATTCTTTATATATACACTAATTTACCTCTGTAAGGATTATTGGTTACAAATCTTCGTCAATGGCTATTATTTGTCTTCTCGTCAATCTTCCTGTACTATTTTTGTTGAAGATTTTGCAATGGGGGTTTCTCATGTTCTTGTAAGGAGGTTGACTGACTGAAGTCCGTTATCGTGCAGATAAGGATGTAAACTCGCATCCCTACGAGTCAGAAATACTATCATTGCTAGAAAATTCGTCGCCTGAATTCGATTTTATTAGTGAAAGAACAGATTTAACTTTGAGTGACACTTATGTCTGGGTTGAGACCGAGTCCCAATTGGAAGAACTCGTGGATGTTTTGAATAAAGAAATGGTGTTTGCTGTTGATACCGAGCAGCACAGTCTAAGATCCTTTCTGGGTTTCACTGCGTTAATACAGGTAATTTTTTTTTCTCTCGCTGAAAGAGGCATAAGCACACCTAAATTGATGAATCTTTCCATGCAATCCCTGTTTCTGTAATTGCTACGGACATTATTTGGTTTTGTTTTTAATTTTGTTTGAAGCAGATTTCTACACACGAGGAAGATTATTTGGTTGACACTATAGCTCTACACGATTCAATGAATCTTCTACGTCCTGTCTTTGCCAACAGTCGTATTTGCAAGGTATCTAAATATATGCTTGGATGCTTGTTTAAGGGTCTAATTTCTGACAAGCTTGGTATCTAAATTAAAAGCAAAAGAGGTTTCAGTACACCATTGATTCGGTATTGATGAGAAAAGTGCAGCAATTACATCTTTTGAGGAATTCTACTGACTCTCCTTTTAGGACGAATATGTTATTTAGTATTAGAAAGTTGGTTTATGATTGCAAGGTTAATGAAATTATTTTTTGTTTTCAGGTGTTTCACGGAGCTGATAATGACATTCTATGGCTGCAAAGAGACTTTCATATATATGTAGTCAATTTATTTGATACTGCAAAGGTGAACATATGCTTCTCAAGTCTCAAAGGAAAGAAATGCTATCTTTGTACAAAGGGGGAAAAAAGGGAAACAATGCACTTCTCATATGGGAAAGATTGGGAGTCATTTTTTATTTTTAAATCTTGTGCTTGTTGTTAAATGTAGGCATGTGAAGTGTTATCAAAACCTCAGAAGTCATTGGCCTACTTACTTGAAACTTATTGTGGGGTATCTACGAACAAAATGTTGCAGGTTGGACATCTTGTCTTATCATTTACTGAATCGCTGATGTGGTACGAAAACCAACATCTTGGCGATCTGATTTCAGATATAAGTCAATTATTATTATCTAGTTACAGTAGTGGTGGTAGAACATATTGTAGAGATCAATATTTTAATTAAACCCATTCTACTTTTGGCGTCAACTTGAATAAGGTAAGGATTGATTCATATCCAGTCTTGTTGTACATATAACAACATTTTCAGTCTTGCTTATTTGTGGTTACTCTTTAATGGTCAGCGAGAAGATTGGAGACAACGACCCCTATCTGCAGATATGGTGCAATATGCTAGGACAGATGCCCACTATCTCCTATATATTGCAAACTGTTTACTCTTTGAGTTGAAACAGGTTAATGGTATGTCTTGGATCTCGCATTTGTGTTTGGTGTCATTCATTTGTTATATAACCTCTTTACATGTAATACGCAAATATGGAGAAAATAACAGTGGAAAAAAGGTGAACATAATGATATCAATGAATAAGGAAACAAACAGGATTGCACACGAGTAATGTGCCAAAATTTTTTTGTTTGCTCAACCTTGTGTGATTTACCCGTGATATTTTTCTTGCGCTAATGTCTCTATATTGGTGATAACTATATTTCTCTTCCATCTTGTAAAAGTGTGATAAGTCTTAATTCAAAAGTGGTTTTAGAAATTGGTACTGCGGAGTTTTGATAGGTAGATAGATTGTAGAATTAGGATGAAGGTTGTATACTTTATCAAATGGCACTAACATTTTATTTCTATTATGTCGTTTTTTTTTAATAAAAATTATCCACTTTCAGTTAACAAATGTTCTTTGACATTCAACATCTGTGTTGATATTTTCTTAATTTTGGGGTCCTGATATTTTGTTGACATTGACATCTACTTTATGCTTATACTCCTACTATTCCATATCTCGTGTGATGACTTTGACATTGTCATCTTTGATTACTCCAAACAAAAGCTTACTTTCCGTATGTAGCCTCACTTTTTTAGGCCACAGCTGAAGTAATCAACAATTTTAGTGTGTTAACTTCAAATTATATCTTCTTCCACATCATCAGATATCTAAATGCATTAATGTATCAGAAAACTCTTCCACCGATGATAAATTCAATTTTATTCTCGAGGCTAGTCGGCGATCAAACATGACTTGTTTGCAACTCTATTCAAAAGAGACTGAAGGTTCTCCTGGAGAGTCTGCTGCATCATCAATATCTTCCCGTCATTTAAACAGTCAATGTGGTAGTACATTAATTTCCTGTAAAACTCAGGTAAGCTGTTTCCTTGACAACTTTGATGCTGTAACATTTGAAGCTCACAATAGAAATTTATAATATTTTATCACCAAACTTTGATCTTTCAGTTTCAGGATCATGTGAGGAGATTATGTGCTTGGCGAGACTTAATGGTTAGTAGTTAATTATCTAAAAAAAAATAAAATCAAGAAACATTATTAATTATTCTCTAAGATTTTTGTAATTATTTTGTTTTGAATTGTTTCTAATTTGTTACATTTGATTAAGAATTTTAAGTAACCCCCTTTTATACGTGGTAATAGCTCATGTTTAATTTTTTTATTGGATGGAAGGTAAAGGTTGGCTCACTAAGTGCTTTAAACTAATGCAAGATGGCCATGGAATTTCATTCATAAATGTAAATATTTGATGGGAGGTCATTTTTATGTCATAGTTGTTATAATGGTATGGTCGAAAATGTCTTTTGGAATTTGGAGGACCATTGGCTTTTCCACCAATGTCTGAAAGCAATCTTACCTTCATCATCTAATATGACCTCCAAAATATTGTAGACTGACCTTTCGCTATAACTGCTCCCATGGTAGTTGGTTTCGAAGGTGTAGAAGTAACCTTCCAGATTGTGAACCAGAAGATTGGATCTCTGTGATGAACTCCTTAAATTATTGTACTTTAGTGAGGGTCAAAACTTAATTTATGAAGACCAGATAATTATGGAGTGTCATTCTATAGTCATCTCACAAATAAAGCAAATAGTTTTGCTAGTTAGGTGACTAGAGATATAAGGAGGAATAAATATCCTAAAAAGTCAAATTCTTTATACAGTCTAGTTCTAAAAGGATTGAATACGGCTCACATGATTGAAAAGAGAAATAATTTTAATTGCTTCTCTTCAAGTTGGCGAAAAATTAGACATCATGAAGGACAGACATCCCTTGTCATTTCATTAAACCTGACGCACTACCACCCATGCTACTGGTTCCTTTTGCTTAAAAGGACCGTAACAGATAAATCAACTATAATGTTTGCTTTAAAAGAAATTTCTTAACGACAGTGTAGCCAAGTAATTATATTAGCAATCTTTAGCTTGCATTTATTATGCATTCTTGCATTAGATTAATGGGAAAATAAAAGTTTCATTATGGCTGGTTACTGGAAATTGAGACTGCCATTTCATTTCAGGCCCGAGTTCATGATGAGAGCCTGAGATATGTCTTATCAGATCAGGCTATTGTAGCTCTTGCAAATCAAGTGTCAAAAAATAAGGGGGAGTTATATGCAACTATATCACAAGCTGATTTGAATGTGGATTTGGGTTCGCGTCTGTTTCTTCCATCTCCCTCCCCTGTTGTTTGCAGCCATTTGGATGATATCCATCATCTCCTCCATGACAAGTCTGGCGACCTTGATAATATTTTTTTGGTGATTTTACAGAACTGCATAGGTTCTAATGGTAGCTGCCCTCTTTCTATATTTAATTATGCACTATTGGTTAAGTATAATCTAAAAATGATGACAATATCTAAACATAATGATAGAAAGAATAAGCAAATATCTAAAAAAGCTTCTAGAGAGCTTTTTGTGCAGAAGTTTTCCTGCAAGTCTCCAGTATATCATAATTGTAGGATTTATGCAAATGATGGACGCTTGCTTTGCTACTGTGATCGGCGAAAACTCGAATGGTCGGTTAGCATCTCTAGTTTCATTTAAGTTAGATTGTAACTGTTAATGCATGTTTGACGCTAAGCAATTATCTTCAAATTTAAACAGGTACTTGCGTCGAGAGTTGGCAGAGCTTGTTGCTGATGATCCTCCTGCCATTAAGCTTCTTTTTGAACCTAAAGGCCGTCCAGAAGATGAGGGCAATGACTTCTATATCCAGAGTAAAAAAAATATATGTGTTGGCTGTGGTGAAGGAAACCACTATTTACGCTATCGAATTATCCCCTCATGCTACAGAATACACTTCCCTGAGCATTTAAAGAGTCATCGTTCTCATGATATTGTCCTACTCTGTGTGGACTGCCATGAAGCTGCCCATGCTGCTGCTGAGAAGCACAAGAGAGAGCTTGCTGCAGAATTTGGAATTCCTCTTTTTGTTCGCAGAGTGGTTGATACTAAGGAAGCCTTCGATATGGCTGAGCCATCTGACTCGGGAACCAATGTTGAGGAGGAAGGCGTATCACCTTTAGAATTGAGAACAGCTGCTATGGCCCTATTGAGGCATGGACCAAGAATGCCATCAAAGCGTCAAGAGGAACTCATGCTTGTATGGCCTATGGGATATATAGTTTACAATCTGTTACATTCTTTTTAGAGATAGTTATTGTATTTCTTTGCATGTGTGTGCATGTAATTTATAAATAAACATTCAATTCATTATTTGTGATATCATCTGCTATCCTAGCCGTTTAAAAGATCTTTGGTTTCATTATATCAAATGCTTAGTGCTTAATCTTTCAATAGAGTTCCATCCTTGTAGAAATTTTTATTTAAGATTTTCTCGATGCTATAGAATTAAATTAATCATCAATTGCACCAATTAGTATGTTTTCATATTTTCCATCGGAATAGGACTGTGAAAAGGGGTCTGAATATTTATTATTCATTAGTACGCGTAGGTACTGACCAATTGAAGATAACCGTTTTTAGTTATGTAATCCTCATTACTCTGGTATCGTTAATTATCAACCCCTCTGGAATTCATAATTTATCTTTTCCTCACACTCCTATCTTTGCTGTGTTTTCAGATTGTCATGAGATACTATGGGCGGAGGGAGATATCTGAAGAAGATTTGGAAAGGGCTCTGCTCGTTGGCATGAGTCCTCACGAGAGAAGACGTCTCCAGAAGAAAAAGGGTCTGGCTTTCAAACACTCAGCACAGAGTGTTTTTCCAGATGCTGAGCATCAGCATGGTGCTTGTAACATTGACACGTCCACTGTGGTCAATTCATCAGTTGGTATATGTAAAGTACACTTTTCGCTACACATTTCACAAAAGACAAAATGTTATTGATGGAGGGTGGAAAATAAGTACTTCAAGCAGTCATTCTTTTTGTTCTAATTCAAGGCTTGATGGCGATGCTAATGCAGATGCTAACAATCACATGAACTCAGATAGTGGTAGCGTATCTGAAACATGTGTGCCTGGTGGAGAGGTCAACTTTTCTGATAATGGCTATGCTAAAACTGCTCAACCGAAATTCAATTCAAAATTATCACTCTTGGGACATGGACCACATGGTAAACTAGTTGTGGATCATCTACTGAGGGAATATGGCGAGGATGGCATCCGACAGTTTTGTCAAAGGTGGAGACAAGTGTTTGTTGCTGCTATTCAACCTCGTTTCTTACCCGCTGGTTGGGATGTCAATCACAGGTACACTGAATTACTTAATTTAACTCTAAACTTCAAAATGGGAGCTCATATGGACACTCTTTTATGCTATAGTTCCCTGCCTTATCTAAAACATGATTATCATTTCCTAATATTACCATGTGTGTGGTTGTATTACTCCAGTCCCCAAGTACACTTAGGGGGCGTTTGGGACAAATAGTGAAGTTCAAAAGTTGTTTAGTCGAGGGGCACACAAGGTAAGGAGTTATTATTAAGGCATAAAATTGAAGTTTTATAGCTGTGGACCCACAAACTCTTTGGGCCAAATAAGGAGTGGAGCTTAACTCCACTCCCCTGACTCCATCTCCTTTGCCCAAACACCCTTTAAGGATTTTTTTGAGTCTTTCACTCAACTTTATTGTTCACAGAGTCACATCAACCTTCCTCATCAAGGTATCATTTTCATGGCATCATCATACTTCCTAGTGCCTGACGGTCACCTTATTTAATGAATGGTAAAGGCTCAAAAGTTCACTATCATTCAGTTAAAAAACTCTTGAAATACAGTATCAATATTCAATATTGAGTGTGGAAAATGTAGGTAGAAATAAATATTTTCTCATACACTGCCTTCATATTTTACAATGATGATGATAAGGATGAAAGAATGTAAGTTAAGCGGTTGAGATTTGATAAAAAGACAAGGTTGTTTTTATCCTGTTGTTGTTGCTTTACCTTTAGGGAATCAAGTTCATATAGCGAGTCGTTTTACTTAAACCTTGTTTCTTGCCTGGTTTCTCGACATCTTGTTTTTGATAGGTTCCATAAACCTGCTTGCAGATCTATATTAATTTTCATTTGAGCTCTTTTGACCATAGAAATCAACGACTGAACAACATGAATACTTACAACTATGGTTTTATTTCTTAATTGCCAGTGCTTCAAATCATACTTTAAACCGTATCTTTAATAAACATTGATATAAATTTCACCGCATTGTTGACTAAGCATGAAAAGGTGGAGACAATTGTTGTGCATGATTTCTCCTGGTGCTTAATCTCTAAAGTTGTTATGTTCAGATTGTCATGACATTAGTGGAATGGTCTGATTTGTGGACTCATGAAAATTTTCTGTTTCTCATTCCAGTGGTAGAAGGGACTTCGGCGAATTCAGTTTGTACAATCCTAAAAAGAAAGCTTCCCCTGCTAATGAGTAGAACAATTTGAAGTACTGCAGCAGTGTCATGTTGCACGTAATGCCAGCATCTCATTCTATGCTAGCAAATTACTGCAGCAGTGCTCACGTTGCAAGTAAAATCTCTCCATTATAATGTTACACGTTTTATTTTAATCTTTAAATTTCTCTAGCGCTGAGGTAGTTGATTTGTTCAATTTTGTGCAGA

mRNA sequence

AGGAGCTCCCTCCAAATCAGAGAAACTCAGGCCAAACGAAAACGGAGGCCATTGATTCAAATGGAACTTCAACACAAGGTCAAAATCGCTCTAGTAGTAGCGTCTTTCGCAGCGCTTACGATCTTATTTACAACCAGACAGCGCAGGAAGCGAAGGAGCGTTCGTAGTTCGTGTTATTTACGAGATGATCAGAAGCCTCAGTGCGCATTTAAACGTGTTTTGGCCGACAATTCTTATTCTGCGTTCAAGCACTTGGAGCTCAATATGAATAAAGATAAGGATGTAAACTCGCATCCCTACGAGTCAGAAATACTATCATTGCTAGAAAATTCGTCGCCTGAATTCGATTTTATTAGTGAAAGAACAGATTTAACTTTGAGTGACACTTATGTCTGGGTTGAGACCGAGTCCCAATTGGAAGAACTCGTGGATGTTTTGAATAAAGAAATGGTGTTTGCTGTTGATACCGAGCAGCACAGTCTAAGATCCTTTCTGGGTTTCACTGCGTTAATACAGATTTCTACACACGAGGAAGATTATTTGGTTGACACTATAGCTCTACACGATTCAATGAATCTTCTACGTCCTGTCTTTGCCAACAGTCGTATTTGCAAGGTGTTTCACGGAGCTGATAATGACATTCTATGGCTGCAAAGAGACTTTCATATATATGTAGTCAATTTATTTGATACTGCAAAGGCATGTGAAGTGTTATCAAAACCTCAGAAGTCATTGGCCTACTTACTTGAAACTTATTGTGGGGTATCTACGAACAAAATGTTGCAGCGAGAAGATTGGAGACAACGACCCCTATCTGCAGATATGGTGCAATATGCTAGGACAGATGCCCACTATCTCCTATATATTGCAAACTGTTTACTCTTTGAGTTGAAACAGGTTAATGAAAACTCTTCCACCGATGATAAATTCAATTTTATTCTCGAGGCTAGTCGGCGATCAAACATGACTTGTTTGCAACTCTATTCAAAAGAGACTGAAGGTTCTCCTGGAGAGTCTGCTGCATCATCAATATCTTCCCGTCATTTAAACAGTCAATGTGGTAGTACATTAATTTCCTGTAAAACTCAGTTTCAGGATCATGTGAGGAGATTATGTGCTTGGCGAGACTTAATGGCCCGAGTTCATGATGAGAGCCTGAGATATGTCTTATCAGATCAGGCTATTGTAGCTCTTGCAAATCAAGTGTCAAAAAATAAGGGGGAGTTATATGCAACTATATCACAAGCTGATTTGAATGTGGATTTGGGTTCGCGTCTGTTTCTTCCATCTCCCTCCCCTGTTGTTTGCAGCCATTTGGATGATATCCATCATCTCCTCCATGACAAGTCTGGCGACCTTGATAATATTTTTTTGGTGATTTTACAGAACTGCATAGGTTCTAATGGTAGCTGCCCTCTTTCTATATTTAATTATGCACTATTGGTTAAGTATAATCTAAAAATGATGACAATATCTAAACATAATGATAGAAAGAATAAGCAAATATCTAAAAAAGCTTCTAGAGAGCTTTTTGTGCAGAAGTTTTCCTGCAAGTCTCCAGTATATCATAATTGTAGGATTTATGCAAATGATGGACGCTTGCTTTGCTACTGTGATCGGCGAAAACTCGAATGGTCGCAATTATCTTCAAATTTAAACAGGTACTTGCGTCGAGAGTTGGCAGAGCTTGTTGCTGATGATCCTCCTGCCATTAAGCTTCTTTTTGAACCTAAAGGCCGTCCAGAAGATGAGGGCAATGACTTCTATATCCAGAGTAAAAAAAATATATGTGTTGGCTGTGGTGAAGGAAACCACTATTTACGCTATCGAATTATCCCCTCATGCTACAGAATACACTTCCCTGAGCATTTAAAGAGTCATCGTTCTCATGATATTGTCCTACTCTGTGTGGACTGCCATGAAGCTGCCCATGCTGCTGCTGAGAAGCACAAGAGAGAGCTTGCTGCAGAATTTGGAATTCCTCTTTTTGTTCGCAGAGTGGTTGATACTAAGGAAGCCTTCGATATGGCTGAGCCATCTGACTCGGGAACCAATGTTGAGGAGGAAGGCGTATCACCTTTAGAATTGAGAACAGCTGCTATGGCCCTATTGAGGCATGGACCAAGAATGCCATCAAAGCGTCAAGAGGAACTCATGCTTATTGTCATGAGATACTATGGGCGGAGGGAGATATCTGAAGAAGATTTGGAAAGGGCTCTGCTCGTTGGCATGAGTCCTCACGAGAGAAGACGTCTCCAGAAGAAAAAGGGTCTGGCTTTCAAACACTCAGCACAGAGTGTTTTTCCAGATGCTGAGCATCAGCATGGTGCTTGTAACATTGACACGTCCACTGTGGTCAATTCATCAGTTGATGCTAACAATCACATGAACTCAGATAGTGGTAGCGTATCTGAAACATGTGTGCCTGGTGGAGAGGTCAACTTTTCTGATAATGGCTATGCTAAAACTGCTCAACCGAAATTCAATTCAAAATTATCACTCTTGGGACATGGACCACATGGTAAACTAGTTGTGGATCATCTACTGAGGGAATATGGCGAGGATGGCATCCGACAGTTTTGTCAAAGGTGGAGACAAGTGTTTGTTGCTGCTATTCAACCTCGTTTCTTACCCGCTGGTTGGGATGTCAATCACAGTGGTAGAAGGGACTTCGGCGAATTCAGTTTGTACAATCCTAAAAAGAAAGCTTCCCCTGCTAATGAGTAGAACAATTTGAAGTACTGCAGCAGTGTCATGTTGCACGTAATGCCAGCATCTCATTCTATGCTAGCAAATTACTGCAGCAGTGCTCACGTTGCAAGTAAAATCTCTCCATTATAATGTTACACGTTTTATTTTAATCTTTAAATTTCTCTAGCGCTGAGGTAGTTGATTTGTTCAATTTTGTGCAGA

Coding sequence (CDS)

AGGAGCTCCCTCCAAATCAGAGAAACTCAGGCCAAACGAAAACGGAGGCCATTGATTCAAATGGAACTTCAACACAAGGTCAAAATCGCTCTAGTAGTAGCGTCTTTCGCAGCGCTTACGATCTTATTTACAACCAGACAGCGCAGGAAGCGAAGGAGCGTTCGTAGTTCGTGTTATTTACGAGATGATCAGAAGCCTCAGTGCGCATTTAAACGTGTTTTGGCCGACAATTCTTATTCTGCGTTCAAGCACTTGGAGCTCAATATGAATAAAGATAAGGATGTAAACTCGCATCCCTACGAGTCAGAAATACTATCATTGCTAGAAAATTCGTCGCCTGAATTCGATTTTATTAGTGAAAGAACAGATTTAACTTTGAGTGACACTTATGTCTGGGTTGAGACCGAGTCCCAATTGGAAGAACTCGTGGATGTTTTGAATAAAGAAATGGTGTTTGCTGTTGATACCGAGCAGCACAGTCTAAGATCCTTTCTGGGTTTCACTGCGTTAATACAGATTTCTACACACGAGGAAGATTATTTGGTTGACACTATAGCTCTACACGATTCAATGAATCTTCTACGTCCTGTCTTTGCCAACAGTCGTATTTGCAAGGTGTTTCACGGAGCTGATAATGACATTCTATGGCTGCAAAGAGACTTTCATATATATGTAGTCAATTTATTTGATACTGCAAAGGCATGTGAAGTGTTATCAAAACCTCAGAAGTCATTGGCCTACTTACTTGAAACTTATTGTGGGGTATCTACGAACAAAATGTTGCAGCGAGAAGATTGGAGACAACGACCCCTATCTGCAGATATGGTGCAATATGCTAGGACAGATGCCCACTATCTCCTATATATTGCAAACTGTTTACTCTTTGAGTTGAAACAGGTTAATGAAAACTCTTCCACCGATGATAAATTCAATTTTATTCTCGAGGCTAGTCGGCGATCAAACATGACTTGTTTGCAACTCTATTCAAAAGAGACTGAAGGTTCTCCTGGAGAGTCTGCTGCATCATCAATATCTTCCCGTCATTTAAACAGTCAATGTGGTAGTACATTAATTTCCTGTAAAACTCAGTTTCAGGATCATGTGAGGAGATTATGTGCTTGGCGAGACTTAATGGCCCGAGTTCATGATGAGAGCCTGAGATATGTCTTATCAGATCAGGCTATTGTAGCTCTTGCAAATCAAGTGTCAAAAAATAAGGGGGAGTTATATGCAACTATATCACAAGCTGATTTGAATGTGGATTTGGGTTCGCGTCTGTTTCTTCCATCTCCCTCCCCTGTTGTTTGCAGCCATTTGGATGATATCCATCATCTCCTCCATGACAAGTCTGGCGACCTTGATAATATTTTTTTGGTGATTTTACAGAACTGCATAGGTTCTAATGGTAGCTGCCCTCTTTCTATATTTAATTATGCACTATTGGTTAAGTATAATCTAAAAATGATGACAATATCTAAACATAATGATAGAAAGAATAAGCAAATATCTAAAAAAGCTTCTAGAGAGCTTTTTGTGCAGAAGTTTTCCTGCAAGTCTCCAGTATATCATAATTGTAGGATTTATGCAAATGATGGACGCTTGCTTTGCTACTGTGATCGGCGAAAACTCGAATGGTCGCAATTATCTTCAAATTTAAACAGGTACTTGCGTCGAGAGTTGGCAGAGCTTGTTGCTGATGATCCTCCTGCCATTAAGCTTCTTTTTGAACCTAAAGGCCGTCCAGAAGATGAGGGCAATGACTTCTATATCCAGAGTAAAAAAAATATATGTGTTGGCTGTGGTGAAGGAAACCACTATTTACGCTATCGAATTATCCCCTCATGCTACAGAATACACTTCCCTGAGCATTTAAAGAGTCATCGTTCTCATGATATTGTCCTACTCTGTGTGGACTGCCATGAAGCTGCCCATGCTGCTGCTGAGAAGCACAAGAGAGAGCTTGCTGCAGAATTTGGAATTCCTCTTTTTGTTCGCAGAGTGGTTGATACTAAGGAAGCCTTCGATATGGCTGAGCCATCTGACTCGGGAACCAATGTTGAGGAGGAAGGCGTATCACCTTTAGAATTGAGAACAGCTGCTATGGCCCTATTGAGGCATGGACCAAGAATGCCATCAAAGCGTCAAGAGGAACTCATGCTTATTGTCATGAGATACTATGGGCGGAGGGAGATATCTGAAGAAGATTTGGAAAGGGCTCTGCTCGTTGGCATGAGTCCTCACGAGAGAAGACGTCTCCAGAAGAAAAAGGGTCTGGCTTTCAAACACTCAGCACAGAGTGTTTTTCCAGATGCTGAGCATCAGCATGGTGCTTGTAACATTGACACGTCCACTGTGGTCAATTCATCAGTTGATGCTAACAATCACATGAACTCAGATAGTGGTAGCGTATCTGAAACATGTGTGCCTGGTGGAGAGGTCAACTTTTCTGATAATGGCTATGCTAAAACTGCTCAACCGAAATTCAATTCAAAATTATCACTCTTGGGACATGGACCACATGGTAAACTAGTTGTGGATCATCTACTGAGGGAATATGGCGAGGATGGCATCCGACAGTTTTGTCAAAGGTGGAGACAAGTGTTTGTTGCTGCTATTCAACCTCGTTTCTTACCCGCTGGTTGGGATGTCAATCACAGTGGTAGAAGGGACTTCGGCGAATTCAGTTTGTACAATCCTAAAAAGAAAGCTTCCCCTGCTAATGAGTAG

Protein sequence

RSSLQIRETQAKRKRRPLIQMELQHKVKIALVVASFAALTILFTTRQRRKRRSVRSSCYLRDDQKPQCAFKRVLADNSYSAFKHLELNMNKDKDVNSHPYESEILSLLENSSPEFDFISERTDLTLSDTYVWVETESQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHEEDYLVDTIALHDSMNLLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVSTNKMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNFILEASRRSNMTCLQLYSKETEGSPGESAASSISSRHLNSQCGSTLISCKTQFQDHVRRLCAWRDLMARVHDESLRYVLSDQAIVALANQVSKNKGELYATISQADLNVDLGSRLFLPSPSPVVCSHLDDIHHLLHDKSGDLDNIFLVILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKHNDRKNKQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWSQLSSNLNRYLRRELAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFDMAEPSDSGTNVEEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGRREISEEDLERALLVGMSPHERRRLQKKKGLAFKHSAQSVFPDAEHQHGACNIDTSTVVNSSVDANNHMNSDSGSVSETCVPGGEVNFSDNGYAKTAQPKFNSKLSLLGHGPHGKLVVDHLLREYGEDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKASPANE

Homology

[Close]

BLAST of ClCG02G001940 vs. NCBI nr
Match: XP_011658699.1 (protein RRP6-like 3 isoform X1 [Cucumis sativus] >KGN43518.1 hypothetical protein Csa_020572 [Cucumis sativus])

HSP 1 Score: 1641.3 bits (4249), Expect = 0.0e+00
Identity = 827/890 (92.92%), Postives = 847/890 (95.17%), Query Frame = 0


Query: 21  MELQHKVKIALVVASFAALTILFTTRQRRKRRSVRSSCYLRDDQKPQCAFKRVLADNSYS 80
           MELQHK+KIALVVASFAALTILFT R+RRKRRSV +SCYLRDDQKPQ AFKRVLADNSYS
Sbjct: 1   MELQHKLKIALVVASFAALTILFTARRRRKRRSVSTSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 81  AFKHLELNMNKDKDVNSHPYESEILSLLENSSPEFDFISERTDLTLSDTYVWVETESQLE 140
           AFKHL+LNMNKD DVNSHPYESEILSLLENSSPEF+FISERTDLTLSDTY WVET SQLE
Sbjct: 61  AFKHLKLNMNKDNDVNSHPYESEILSLLENSSPEFNFISERTDLTLSDTYAWVETVSQLE 120

Query: 141 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHEEDYLVDTIALHDSMNLLRPVFAN 200
           ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTH+EDYLVDTIALHDSMNLLRPVFAN
Sbjct: 121 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHKEDYLVDTIALHDSMNLLRPVFAN 180

Query: 201 SRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVSTNKM 260
           SRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGV+TNKM
Sbjct: 181 SRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKM 240

Query: 261 LQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNFILEASRRS 320
           LQREDWRQRPL ADMVQYARTDAHYLLYIANCLL ELKQVNENSSTDDKFNF+LEASRRS
Sbjct: 241 LQREDWRQRPLPADMVQYARTDAHYLLYIANCLLVELKQVNENSSTDDKFNFLLEASRRS 300

Query: 321 NMTCLQLYSKETEGSPGESAASSISSRHLNSQCGSTLISCKTQFQDHVRRLCAWRDLMAR 380
           NMTCLQLYSKETEGSPGESAASSI SRHLNSQ GS LISCKTQFQD VRRLCAWRDLMAR
Sbjct: 301 NMTCLQLYSKETEGSPGESAASSIWSRHLNSQGGSALISCKTQFQDRVRRLCAWRDLMAR 360

Query: 381 VHDESLRYVLSDQAIVALANQVSKNKGELYATISQADLNVDLGSRLFLPSPSPVVCSHLD 440
           VHDESLRYVLSDQAIVA+A QV KN GELYATI+Q DLNVDL S LFLPSPS VVCSHLD
Sbjct: 361 VHDESLRYVLSDQAIVAIAIQVPKNTGELYATIAQVDLNVDLSSSLFLPSPSSVVCSHLD 420

Query: 441 DIHHLLHDKSGDLDNIFLVILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKHNDRKN- 500
           DIH LLHD  GDLDNIFLVILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKHNDRKN 
Sbjct: 421 DIHCLLHDNFGDLDNIFLVILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKHNDRKNA 480

Query: 501 KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWSQLSSNLNRYLRRE 560
           KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEW         YLRRE
Sbjct: 481 KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEW---------YLRRE 540

Query: 561 LAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIH 620
           LAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYR+H
Sbjct: 541 LAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRVH 600

Query: 621 FPEHLKSHRSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFDM-AE 680
           FPEHLKSHRSHDIVLLCVDCHE AHAAAEK+KRELAAEFGIPLFVRRVVDTKEAFDM AE
Sbjct: 601 FPEHLKSHRSHDIVLLCVDCHETAHAAAEKYKRELAAEFGIPLFVRRVVDTKEAFDMAAE 660

Query: 681 PSDSGTNVEEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGRREISEEDLER 740
           PSDS TNV+EEGVSPLELRTAAMALLRHGPRMP KRQEELM +VM+YYGRREISEEDLER
Sbjct: 661 PSDSETNVQEEGVSPLELRTAAMALLRHGPRMPLKRQEELMFVVMKYYGRREISEEDLER 720

Query: 741 ALLVGMSPHERRRLQKKKGLAFKHSAQSVFPDAEHQHGACNIDTSTVVNSSVDANNHMNS 800
           ALLVGMSPHERRRLQKKKGLAFKHS QSVFPDAE Q+GACNIDTSTV +SSVD NNHMNS
Sbjct: 721 ALLVGMSPHERRRLQKKKGLAFKHSPQSVFPDAERQNGACNIDTSTVDSSSVDVNNHMNS 780

Query: 801 DSGSVSETCVPGGEVNFSDNGYAKTAQPKFNSKLSLLGHGPHGKLVVDHLLREYGEDGIR 860
           DSGSVSETCVPGGEV+FSDNGYAKTAQPKFNSKLSLLGHGPHGKLVVD+LL+EYGEDGIR
Sbjct: 781 DSGSVSETCVPGGEVSFSDNGYAKTAQPKFNSKLSLLGHGPHGKLVVDYLLKEYGEDGIR 840

Query: 861 QFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKASPANE 909
           QFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKA P NE
Sbjct: 841 QFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKAFPDNE 881

[Close]

BLAST of ClCG02G001940 vs. NCBI nr
Match: XP_038887745.1 (protein RRP6-like 3 [Benincasa hispida] >XP_038887746.1 protein RRP6-like 3 [Benincasa hispida] >XP_038887747.1 protein RRP6-like 3 [Benincasa hispida] >XP_038887748.1 protein RRP6-like 3 [Benincasa hispida] >XP_038887749.1 protein RRP6-like 3 [Benincasa hispida] >XP_038887750.1 protein RRP6-like 3 [Benincasa hispida] >XP_038887751.1 protein RRP6-like 3 [Benincasa hispida] >XP_038887752.1 protein RRP6-like 3 [Benincasa hispida] >XP_038887753.1 protein RRP6-like 3 [Benincasa hispida] >XP_038887754.1 protein RRP6-like 3 [Benincasa hispida])

HSP 1 Score: 1639.4 bits (4244), Expect = 0.0e+00
Identity = 822/889 (92.46%), Postives = 850/889 (95.61%), Query Frame = 0


Query: 21  MELQHKVKIALVVASFAALTILFTTRQRRKRRSVRSSCYLRDDQKPQCAFKRVLADNSYS 80
           MELQHK+KIALVVASFAALTILFT  +RRKRRSVR+SCYLRDDQKPQ AFK VLADNSYS
Sbjct: 1   MELQHKLKIALVVASFAALTILFTAGRRRKRRSVRTSCYLRDDQKPQYAFKCVLADNSYS 60

Query: 81  AFKHLELNMNKDKDVNSHPYESEILSLLENSSPEFDFISERTDLTLSDTYVWVETESQLE 140
            FKHL+LN NKD DVNSHPYESEILSLLENS PEFDFISERTDLTLSDTYVWVETESQLE
Sbjct: 61  QFKHLKLNPNKDLDVNSHPYESEILSLLENSKPEFDFISERTDLTLSDTYVWVETESQLE 120

Query: 141 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHEEDYLVDTIALHDSMNLLRPVFAN 200
           EL+DVLNKE VFAVDTEQHSLRSFLGFTALIQIST +EDYLVDTIALHDSM+LLRP+FAN
Sbjct: 121 ELLDVLNKETVFAVDTEQHSLRSFLGFTALIQISTPKEDYLVDTIALHDSMSLLRPIFAN 180

Query: 201 SRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVSTNKM 260
           SRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGV+TNKM
Sbjct: 181 SRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKM 240

Query: 261 LQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNFILEASRRS 320
           LQREDWRQRPL ADMVQYARTDAHYLLYIANCLL ELKQVNEN+STDDKFNF+LEASRRS
Sbjct: 241 LQREDWRQRPLPADMVQYARTDAHYLLYIANCLLSELKQVNENTSTDDKFNFLLEASRRS 300

Query: 321 NMTCLQLYSKETEGSPGESAASSISSRHLNSQCGSTLISCKTQFQDHVRRLCAWRDLMAR 380
           NMTCLQLYSKETEGSPGESAASSISSRHLNSQ GS L+SCKTQFQDHVRRLCAWRDLMAR
Sbjct: 301 NMTCLQLYSKETEGSPGESAASSISSRHLNSQGGSMLVSCKTQFQDHVRRLCAWRDLMAR 360

Query: 381 VHDESLRYVLSDQAIVALANQVSKNKGELYATISQADLNVDLGSRLFLPSPSPVVCSHLD 440
           VHDE+LRYVLSDQAIVALANQVSKN GELYATI+QADLNVDL S L+LPSPSPVVCSHLD
Sbjct: 361 VHDENLRYVLSDQAIVALANQVSKNTGELYATIAQADLNVDLSSSLYLPSPSPVVCSHLD 420

Query: 441 DIHHLLHDKSGDLDNIFLVILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKHNDRKN- 500
           DIH LLHDKSGDLD+IFL ILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISK +DRKN 
Sbjct: 421 DIHCLLHDKSGDLDDIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKQSDRKNA 480

Query: 501 KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWSQLSSNLNRYLRRE 560
           KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEW         YLRRE
Sbjct: 481 KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEW---------YLRRE 540

Query: 561 LAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIH 620
           LAEL+ADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIH
Sbjct: 541 LAELIADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIH 600

Query: 621 FPEHLKSHRSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFDMAEP 680
           FPEHLKSHRSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFDMAEP
Sbjct: 601 FPEHLKSHRSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFDMAEP 660

Query: 681 SDSGTNVEEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGRREISEEDLERA 740
           SDSGT+V+EEGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGRREISEEDLE+A
Sbjct: 661 SDSGTDVQEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGRREISEEDLEKA 720

Query: 741 LLVGMSPHERRRLQKKKGLAFKHSAQSVFPDAEHQHGACNIDTSTVVNSSVDANNHMNSD 800
           LLVGMSPHE+RRLQKKKGLA KHSAQSVFP AEHQ+G CNIDTSTVVNSSVD  NHMN+D
Sbjct: 721 LLVGMSPHEKRRLQKKKGLALKHSAQSVFPAAEHQNGGCNIDTSTVVNSSVDVKNHMNAD 780

Query: 801 SGSVSETCVPGGEVNFSDNGYAKTAQPKFNSKLSLLGHGPHGKLVVDHLLREYGEDGIRQ 860
           SGSVSETC+PGGEV+FSD+GYAKT QPKFN KLSLLGHGPHGKLVVDHLLREYGEDGIRQ
Sbjct: 781 SGSVSETCLPGGEVSFSDDGYAKTVQPKFNPKLSLLGHGPHGKLVVDHLLREYGEDGIRQ 840

Query: 861 FCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKASPANE 909
           FCQRWRQVFVAAIQPRFLPAGWDVNHSG+RDFGEFSLYNP KKAS ANE
Sbjct: 841 FCQRWRQVFVAAIQPRFLPAGWDVNHSGKRDFGEFSLYNPIKKASLANE 880

[Close]

BLAST of ClCG02G001940 vs. NCBI nr
Match: XP_008455438.1 (PREDICTED: protein RRP6-like 3 isoform X1 [Cucumis melo])

HSP 1 Score: 1632.5 bits (4226), Expect = 0.0e+00
Identity = 824/890 (92.58%), Postives = 843/890 (94.72%), Query Frame = 0


Query: 21  MELQHKVKIALVVASFAALTILFTTRQRRKRRSVRSSCYLRDDQKPQCAFKRVLADNSYS 80
           MELQHKVKIALVVASFAALTILFT R+RRKRRS  +SCYLRDDQKPQ AFKRVLADNSYS
Sbjct: 1   MELQHKVKIALVVASFAALTILFTARRRRKRRSGSTSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 81  AFKHLELNMNKDKDVNSHPYESEILSLLENSSPEFDFISERTDLTLSDTYVWVETESQLE 140
           AFKHL+LNMNKD DVNSHPYESEILSLLENSSPE +FISERTDLTLSDTY WVETESQLE
Sbjct: 61  AFKHLKLNMNKDNDVNSHPYESEILSLLENSSPELNFISERTDLTLSDTYAWVETESQLE 120

Query: 141 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHEEDYLVDTIALHDSMNLLRPVFAN 200
           ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTH+EDYLVDTIALHDSMNLLRPVFAN
Sbjct: 121 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHKEDYLVDTIALHDSMNLLRPVFAN 180

Query: 201 SRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVSTNKM 260
             ICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKP KSLAYLLETYC V+TNKM
Sbjct: 181 RSICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPMKSLAYLLETYCRVATNKM 240

Query: 261 LQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNFILEASRRS 320
           LQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNF+LEASRRS
Sbjct: 241 LQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNFLLEASRRS 300

Query: 321 NMTCLQLYSKETEGSPGESAASSISSRHLNSQCGSTLISCKTQFQDHVRRLCAWRDLMAR 380
           NMTCLQLYSKETEGSPGESAASSISSRHLNSQ GS LISCKTQFQD VRRLCAWRDLMAR
Sbjct: 301 NMTCLQLYSKETEGSPGESAASSISSRHLNSQGGSALISCKTQFQDRVRRLCAWRDLMAR 360

Query: 381 VHDESLRYVLSDQAIVALANQVSKNKGELYATISQADLNVDLGSRLFLPSPSPVVCSHLD 440
           VHDESLRYVLSDQAI+A+A QV K+ GELYATI+QADLNVDL S  FLPSPS VVCSHLD
Sbjct: 361 VHDESLRYVLSDQAILAIAIQVPKSTGELYATIAQADLNVDLSSSPFLPSPSSVVCSHLD 420

Query: 441 DIHHLLHDKSGDLDNIFLVILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKHNDRKN- 500
           DIH LLHD  GDLD  FL ILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKHNDRKN 
Sbjct: 421 DIHCLLHDNFGDLDRFFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKHNDRKNA 480

Query: 501 KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWSQLSSNLNRYLRRE 560
           KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEW         YLRRE
Sbjct: 481 KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEW---------YLRRE 540

Query: 561 LAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIH 620
           LAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIH
Sbjct: 541 LAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIH 600

Query: 621 FPEHLKSHRSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFDM-AE 680
           FPEHLKSHRSHDIVLLCVDCHE AHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFDM AE
Sbjct: 601 FPEHLKSHRSHDIVLLCVDCHETAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFDMAAE 660

Query: 681 PSDSGTNVEEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGRREISEEDLER 740
           PSDS TNV EEGVSPLELRTAAMALLRHGPRMP KRQEELML+VM+YYGRREISEEDLER
Sbjct: 661 PSDSETNVHEEGVSPLELRTAAMALLRHGPRMPLKRQEELMLVVMKYYGRREISEEDLER 720

Query: 741 ALLVGMSPHERRRLQKKKGLAFKHSAQSVFPDAEHQHGACNIDTSTVVNSSVDANNHMNS 800
           ALLVGMSPHERRR+QKKKGLAFKHS QSVFPDAEHQ+GACNIDTSTV NSSVD NNHMNS
Sbjct: 721 ALLVGMSPHERRRVQKKKGLAFKHSPQSVFPDAEHQNGACNIDTSTVDNSSVDVNNHMNS 780

Query: 801 DSGSVSETCVPGGEVNFSDNGYAKTAQPKFNSKLSLLGHGPHGKLVVDHLLREYGEDGIR 860
           DSGSVS+TC PGGEV+FSDNGYAKTAQPKFNSKLSLLGHGPHGKLVVD+LL+EY EDGIR
Sbjct: 781 DSGSVSDTCGPGGEVSFSDNGYAKTAQPKFNSKLSLLGHGPHGKLVVDYLLKEYHEDGIR 840

Query: 861 QFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKASPANE 909
           QFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKASPANE
Sbjct: 841 QFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKASPANE 881

[Close]

BLAST of ClCG02G001940 vs. NCBI nr
Match: XP_022135803.1 (protein RRP6-like 3 isoform X1 [Momordica charantia])

HSP 1 Score: 1583.2 bits (4098), Expect = 0.0e+00
Identity = 794/890 (89.21%), Postives = 833/890 (93.60%), Query Frame = 0


Query: 21  MELQHKVKIALVVASFAALTILFTTRQRRKRRSVRSSCYLR-DDQKPQCAFKRVLADNSY 80
           MEL+HKVKI L VASFAALTILFT R+RRK++SVRSSCYLR DDQK Q  FKRVLADNSY
Sbjct: 1   MELKHKVKIVLAVASFAALTILFTARRRRKQKSVRSSCYLRGDDQKXQYTFKRVLADNSY 60

Query: 81  SAFKHLELNMNKDKDVNSHPYESEILSLLENSSPEFDFISERTDLTLSDTYVWVETESQL 140
           S FKHL+LNMN D DVNSHPYESEILSLLENS PE+DF+SER D T SD YVWVETESQL
Sbjct: 61  SVFKHLKLNMNTDNDVNSHPYESEILSLLENSFPEYDFVSERKDFTSSDAYVWVETESQL 120

Query: 141 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHEEDYLVDTIALHDSMNLLRPVFA 200
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQIST +EDYLVD IALHDSMNLLRP+FA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTRKEDYLVDAIALHDSMNLLRPIFA 180

Query: 201 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVSTNK 260
           NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACE+LSKPQKSLAYLLETYCGV+TNK
Sbjct: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACELLSKPQKSLAYLLETYCGVATNK 240

Query: 261 MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNFILEASRR 320
           MLQREDWRQRPLSA+MVQYARTDAHYLL+IANCLL ELKQVNENSSTDDKFNF+LEASRR
Sbjct: 241 MLQREDWRQRPLSAEMVQYARTDAHYLLHIANCLLSELKQVNENSSTDDKFNFLLEASRR 300

Query: 321 SNMTCLQLYSKETEGSPGESAASSISSRHLNSQCGSTLISCKTQFQDHVRRLCAWRDLMA 380
           SNM CLQLY+KETEGSPGESAASSISSR LNSQ  ST+ISCKTQFQD VRRLCAWRDLMA
Sbjct: 301 SNMICLQLYAKETEGSPGESAASSISSRRLNSQGVSTIISCKTQFQDLVRRLCAWRDLMA 360

Query: 381 RVHDESLRYVLSDQAIVALANQVSKNKGELYATISQADLNVDLGSRLFLPSPSPVVCSHL 440
           RVHDESLRYVLSDQAIVALAN+V KN  ELYATI+QADL+VDL   LFLPSPSPVVCSHL
Sbjct: 361 RVHDESLRYVLSDQAIVALANKVPKNTMELYATIAQADLHVDLSPSLFLPSPSPVVCSHL 420

Query: 441 DDIHHLLHDKSGDLDNIFLVILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKHNDRKN 500
           DD+H LLHDKSGDLDNIFLVILQNCIGS+GSCPLSIFNYALLVKYNLKMMTISKHN RKN
Sbjct: 421 DDLHCLLHDKSGDLDNIFLVILQNCIGSDGSCPLSIFNYALLVKYNLKMMTISKHNHRKN 480

Query: 501 -KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWSQLSSNLNRYLRR 560
            KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEW         Y+RR
Sbjct: 481 AKQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEW---------YVRR 540

Query: 561 ELAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRI 620
           ELAELV DDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRI
Sbjct: 541 ELAELVDDDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRI 600

Query: 621 HFPEHLKSHRSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFDMAE 680
           HFPEHLKSHRSHDIVLLCVDCHE AHAAAEKHKRELAAEFGIPLFVRRVVDTKEAF++AE
Sbjct: 601 HFPEHLKSHRSHDIVLLCVDCHEIAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFNLAE 660

Query: 681 PSDSGTNVEEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGRREISEEDLER 740
           PSDSGTN +EEGVSPLELRTAAMALLRHGPRMPSKRQEELML VMRYYGRREISEEDLER
Sbjct: 661 PSDSGTNFQEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLTVMRYYGRREISEEDLER 720

Query: 741 ALLVGMSPHERRRLQKKKGLAFKHSAQSVFPDAEHQHGACNIDTSTVVNSSVDANNHMNS 800
           ALLVGMSPHERRRLQKK+G+A KHSAQS FP+AEHQ+GAC+IDTST VNSSVD N+H NS
Sbjct: 721 ALLVGMSPHERRRLQKKRGIALKHSAQSNFPNAEHQNGACDIDTSTAVNSSVDINSHTNS 780

Query: 801 DSGSVSETCVPGGEVNFSDNGYAKTAQPKFNSKLSLLGHGPHGKLVVDHLLREYGEDGIR 860
           DSGSVS+ C+PGG+V FSDNG A+TAQPKFN KLSLLGHGPHGK VVDHLLREYGE+GIR
Sbjct: 781 DSGSVSDKCLPGGQVGFSDNGSARTAQPKFNPKLSLLGHGPHGKQVVDHLLREYGEEGIR 840

Query: 861 QFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKASPANE 909
           QFCQRWRQVFVAA +PRFLPAGWDVNHSGRRDFGEFS+YNP KKASP+NE
Sbjct: 841 QFCQRWRQVFVAATKPRFLPAGWDVNHSGRRDFGEFSVYNPIKKASPSNE 881

[Close]

BLAST of ClCG02G001940 vs. NCBI nr
Match: KAA0040242.1 (protein RRP6-like 3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 1570.8 bits (4066), Expect = 0.0e+00
Identity = 804/916 (87.77%), Postives = 831/916 (90.72%), Query Frame = 0


Query: 21  MELQHKVKIALVVASFAALTILFTTRQRRKRRSVRSSCYLRDDQKPQCAFKRVLADNSYS 80
           MELQHKVKIALVVASFAALTILFT R+RRKRRS  +SCYLRDDQKPQ AFKRVLADNSYS
Sbjct: 1   MELQHKVKIALVVASFAALTILFTARRRRKRRSGSTSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 81  AFKHLELNMNKDKDVNSHPYESEILSLLENSSPEFDFISERTDLTLSDTYVWVETESQLE 140
           AFKHL+LNMNKD DVNSHPYESEILSLLENSSPE +FISERTDLTLSDTY WVETESQL+
Sbjct: 61  AFKHLKLNMNKDNDVNSHPYESEILSLLENSSPELNFISERTDLTLSDTYAWVETESQLK 120

Query: 141 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHEEDYLVDTIALHDSMNLLRPVFAN 200
           ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTH+EDYLVDTIALHDSMNLLRPVFAN
Sbjct: 121 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHKEDYLVDTIALHDSMNLLRPVFAN 180

Query: 201 SRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVSTNKM 260
             ICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKP KSLAYLLETYC V+TNKM
Sbjct: 181 RSICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPMKSLAYLLETYCRVATNKM 240

Query: 261 LQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNFILEASRRS 320
           LQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNF+LEASRRS
Sbjct: 241 LQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNFLLEASRRS 300

Query: 321 NMTCLQLYSKETEGSPGESAASSISSRHLNSQCGSTLISCKT------------------ 380
           NMTCLQLYSKETEGSPGESAASSISSRHLNSQ GS LISCKT                  
Sbjct: 301 NMTCLQLYSKETEGSPGESAASSISSRHLNSQGGSALISCKTQVSCPPDDFDGVTFEAVS 360

Query: 381 --------QFQDHVRRLCAWRDLMARVHDESLRYVLSDQAIVALANQVSKNKGELYATIS 440
                   QFQD VRRLCAWRDLMARVHDESLRYVLSDQAI+A+A QV K+ GELYATI+
Sbjct: 361 YTNLCFLIQFQDRVRRLCAWRDLMARVHDESLRYVLSDQAILAIAIQVPKSTGELYATIA 420

Query: 441 QADLNVDLGSRLFLPSPSPVVCSHLDDIHHLLHDKSGDLDNIFLVILQNCIGSNGSCPLS 500
           QADLNVDL S  FLPSPS VVCSHLDDIH LLH+  GDLD  FL ILQNCIGSNGSCPLS
Sbjct: 421 QADLNVDLSSSPFLPSPSSVVCSHLDDIHCLLHNNFGDLDKFFLGILQNCIGSNGSCPLS 480

Query: 501 IFNYALLVKYNLKMMTISKHNDRKN-KQISKKASRELFVQKFSCKSPVYHNCRIYANDGR 560
           IFNYALLVKYNLKMMTISKHNDRKN KQISKKASRELFVQKFSCKSPVYHNCRIYANDGR
Sbjct: 481 IFNYALLVKYNLKMMTISKHNDRKNAKQISKKASRELFVQKFSCKSPVYHNCRIYANDGR 540

Query: 561 LLCYCDRRKLEWSQLSSNLNRYLRRELAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSK 620
           LLCYCDRRKLEW         YLRRELAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSK
Sbjct: 541 LLCYCDRRKLEW---------YLRRELAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSK 600

Query: 621 KNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEAAHAAAEKHKRE 680
           KNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHE AHAAAEKHKRE
Sbjct: 601 KNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHETAHAAAEKHKRE 660

Query: 681 LAAEFGIPLFVRRVVDTKEAFDM-AEPSDSGTNVEEEGVSPLELRTAAMALLRHGPRMPS 740
           LAAEFGIPLFVRRVVDTKEAFDM AEPSDS TNV EEGVSPLELRTAAMALLRHGPRMP 
Sbjct: 661 LAAEFGIPLFVRRVVDTKEAFDMAAEPSDSETNVHEEGVSPLELRTAAMALLRHGPRMPL 720

Query: 741 KRQEELMLIVMRYYGRREISEEDLERALLVGMSPHERRRLQKKKGLAFKHSAQSVFPDAE 800
           KRQEELML+VM+YYGRREISEEDLERALLVGMSPHERRR+QKKKGLAFKHS QSVFPDAE
Sbjct: 721 KRQEELMLVVMKYYGRREISEEDLERALLVGMSPHERRRVQKKKGLAFKHSPQSVFPDAE 780

Query: 801 HQHGACNIDTSTVVNSSVDANNHMNSDSGSVSETCVPGGEVNFSDNGYAKTAQPKFNSKL 860
           HQ+GACNIDTSTV NSSVD NNHMNSDSGSVS+TC PGGEV+FSDNGYAKTAQPKFNSKL
Sbjct: 781 HQNGACNIDTSTVDNSSVDVNNHMNSDSGSVSDTCGPGGEVSFSDNGYAKTAQPKFNSKL 840

Query: 861 SLLGHGPHGKLVVDHLLREYGEDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFG 909
           SLLGHGPHGKLVVD+LL+EY EDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNH   +++ 
Sbjct: 841 SLLGHGPHGKLVVDYLLKEYHEDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNHRPNKEW- 900

[Close]

BLAST of ClCG02G001940 vs. ExPASy Swiss-Prot
Match: A9LLI8 (Protein RRP6-like 3 OS=Arabidopsis thaliana OX=3702 GN=RRP6L3 PE=2 SV=1)

HSP 1 Score: 1108.6 bits (2866), Expect = 0.0e+00
Identity = 571/907 (62.95%), Postives = 697/907 (76.85%), Query Frame = 0


Query: 21  MELQHKVKIALVVASFAALTILFTT-----RQRRKRRSVRSSCYLRDDQKPQCAFKRVLA 80
           MEL+ K K+ + VAS  A+TILF T     RQRRK+ S  SSCYL  + KPQ  FKRVLA
Sbjct: 1   MELKEKAKVVITVASLVAVTILFVTEYRRRRQRRKQTSSLSSCYLHSELKPQFGFKRVLA 60

Query: 81  DNSYSAFKHLEL----NMNKDKDVNSHPYESEILSLLENSSPEFDFISERTDLTLSDTYV 140
           DNSYS FKHL+L    + + +K  N HPYE+EI  LLEN   EF F+     L +SD+YV
Sbjct: 61  DNSYSEFKHLKLVDASSSSLEKPSNGHPYETEITVLLENPQIEFGFLRGECSLEMSDSYV 120

Query: 141 WVETESQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHEEDYLVDTIALHDSM 200
           WVETESQL+EL ++L KE VFAVDTEQHSLRSFLGFTALIQISTHEED+LVDTIALHD M
Sbjct: 121 WVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIALHDVM 180

Query: 201 NLLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLET 260
           ++LRPVF++  ICKVFHGADND++WLQRDFHIYVVN+FDTAKACEVLSKPQ+SLAYLLET
Sbjct: 181 SILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLET 240

Query: 261 YCGVSTNKMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQV--NENSSTDDK 320
            CGV+TNK+LQREDWRQRPLS +MV+YARTDAHYLLYIA+ L  ELKQ+   ++SS DD+
Sbjct: 241 VCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLATEDSSSPDDR 300

Query: 321 FNFILEASRRSNMTCLQLYSKETEGSPGESAASSISSRHLNSQCGSTLISCKTQFQDHVR 380
           F+F+LEASRRSNMTCLQLY+KETE  PG +A+SSI  RHLN     + IS     ++ VR
Sbjct: 301 FHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLNGHGDKSNISLNA--EELVR 360

Query: 381 RLCAWRDLMARVHDESLRYVLSDQAIVALANQVSKNKGELYATISQADLNVDLGSRL--F 440
           +LCAWRDLM R+HDES RYVLSDQAIV L+ +      E+Y TI+  DL  +    L   
Sbjct: 361 KLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEIYDTIAHIDLATESSPSLSSS 420

Query: 441 LPSPSPVVCSHLDDIHHLLHDKSGDLDNIFLVILQNCIGSNGSCPLSIFNYALLVKYNLK 500
           + SP PV+CSHLDDI+ ++ DK   LD++  V+L+ C+G+NG+CP+S+FNY+LLV +  K
Sbjct: 421 VQSPYPVICSHLDDIYKMILDKLAKLDDLLPVVLKKCLGTNGTCPISVFNYSLLVNFKTK 480

Query: 501 MMTIS--KHNDRKN--KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKL 560
           + + S  K N  KN  +Q ++KASRELFV+KFSCK+PVYHNCRIYANDGRLLCYCD+RKL
Sbjct: 481 LSSHSAPKQNGHKNFKQQFTRKASRELFVKKFSCKAPVYHNCRIYANDGRLLCYCDKRKL 540

Query: 561 EWSQLSSNLNRYLRRELAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEG 620
           EW         YL R LA+LV ++PPAI LLFEPKGRPEDEGNDFYIQ+K+NICVGCGEG
Sbjct: 541 EW---------YLNRGLAKLVEENPPAIMLLFEPKGRPEDEGNDFYIQTKRNICVGCGEG 600

Query: 621 NHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLF 680
            HYLRYRIIPSCYR+HFPEHLKSHRSHDIVLLCVDCHE AHAAAE++K+++A EFGIPLF
Sbjct: 601 KHYLRYRIIPSCYRVHFPEHLKSHRSHDIVLLCVDCHEVAHAAAERYKKQIATEFGIPLF 660

Query: 681 VRRVVDTKEA---FDMAEPSDSGTNVEEEGVSPLELRTAAMALLRHGPRMPSKRQEELML 740
           VRRV+D+KEA     + E   +G + E+ GVSPL LR+AAMALLRHG RMPS R+EEL+ 
Sbjct: 661 VRRVLDSKEAQGTSSLVEDESTGDS-EDAGVSPLHLRSAAMALLRHGNRMPSSRREELLQ 720

Query: 741 IVMRYYGRREISEEDLERALLVGMSPHERRRLQKKKGLAFKHSAQSVFPDA---EHQHGA 800
            V  YYG R++SEEDLE+ALL+G+SPHERR+L++KKG++FKHSA+    D    E+  G 
Sbjct: 721 TVKMYYGGRDLSEEDLEKALLIGLSPHERRKLERKKGVSFKHSAEVAGMDKQEDENNDGE 780

Query: 801 CNIDTSTVVNSSVDANNHMNSDSGSVSETCVPGGEVNFSDNGYAKTAQPKFNSKLSLLGH 860
              D   ++  +V+ +  ++      SE     G    +D         + NSKLSLLGH
Sbjct: 781 ALADFEKIM--TVERSTVVDDSGDGTSE---GDGAKELNDTQCNGNTLHQQNSKLSLLGH 840

Query: 861 GPHGKLVVDHLLREYGEDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSLY 905
           GPHGK +V++LLRE+GEDG+R FCQRWR+VFV A+ PR LP GW+V+HSGRRDFGEFS+Y
Sbjct: 841 GPHGKQIVEYLLREHGEDGVRDFCQRWRKVFVDAVHPRHLPGGWNVSHSGRRDFGEFSVY 890

[Close]

BLAST of ClCG02G001940 vs. ExPASy Swiss-Prot
Match: A9LLI7 (Protein RRP6-like 2 OS=Arabidopsis thaliana OX=3702 GN=RRP6L2 PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 8.5e-51
Identity = 135/382 (35.34%), Postives = 203/382 (53.14%), Query Frame = 0


Query: 30  ALVVASFAALTILFTTRQRRKRRSVRSSCYLRDDQKPQCAFKRVLADNSYSAFKHLELNM 89
           A V    + + +    R +      +   ++   +KPQ  +  +L +N+   F+H+ L  
Sbjct: 162 AAVNGGGSVIDVKMAERDKNSSGKAKVPFHVPTIKKPQEEY-NILVNNANLPFEHVWLER 221

Query: 90  NKDKDVNSHPYESEILSLLENSSPEFDFISERTDLTLSDT-YVWVETESQLEELVDVLNK 149
           ++D     HP E    S+L+    + + +     L L  T + +V+    L+ELV  L  
Sbjct: 222 SEDDLRAMHPLEK--FSVLDFVDKDVNEMEPVKPLPLEQTPFKFVQEVKDLKELVAKLRS 281

Query: 150 EMVFAVDTEQHSLRSFLGFTALIQISTHEEDYLVDTIALHDSMN-LLRPVFANSRICKVF 209
              FAVD E +  RSF G T L+QIST  EDY+VDT  L   +   LR +F + +  KV 
Sbjct: 282 VEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVM 341

Query: 210 HGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVSTNKMLQREDWR 269
           HGAD DI+WLQRDF IYV NLFDT +A  VL+  + SL +LL+ +CGV+ NK  Q  DWR
Sbjct: 342 HGADRDIIWLQRDFGIYVCNLFDTGQASRVLNLERNSLEFLLQHFCGVTANKEYQNADWR 401

Query: 270 QRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNFILEASRRSNMTCLQL 329
            RPL  +M +YAR D HYLLYI + +  EL+++ ++ +  D  + +LE  +RS   C QL
Sbjct: 402 IRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHTD--SPLLEVYKRSYDVCTQL 461

Query: 330 YSKETEGSPGESAASSISSRHLNSQCGSTLISCKTQFQDHVRRLCAWRDLMARVHDESLR 389
           Y KE          +  S  H+     +   + +      V  LC WRD +AR  DES  
Sbjct: 462 YEKE--------LLTENSYLHVYGLQAAGFNAAQLAI---VAGLCEWRDFIARAEDESTG 521

Query: 390 YVLSDQAIVALANQVSKNKGEL 410
           YVL ++ ++ +A ++  + G+L
Sbjct: 522 YVLPNKVLLEIAKEMPDSVGKL 527

[Close]

BLAST of ClCG02G001940 vs. ExPASy Swiss-Prot
Match: Q0WVE8 (Protein RRP6-like 1 OS=Arabidopsis thaliana OX=3702 GN=RRP6L1 PE=2 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 4.2e-50
Identity = 132/340 (38.82%), Postives = 183/340 (53.82%), Query Frame = 0


Query: 65  KPQCAFKRVLADNSYSAFKHLELNMNKDKDVNSHPYESEILSLLENSSPEFDFISERTDL 124
           KPQ  +K +L DN+ + F+H+ L  ++D     HP E   LS+++        +     L
Sbjct: 52  KPQEEYK-ILVDNANNPFEHVLLEKSEDGLRFIHPLEE--LSVMDFVDRNLSEMRPVKPL 111

Query: 125 TLSDT-YVWVETESQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHEEDYLVD 184
            L +T +  VE    LE+L   L     FAVD E +  R+F G T L+QIST  EDY+VD
Sbjct: 112 PLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTEDYIVD 171

Query: 185 TIALHDSMN-LLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQ 244
              L D +   LR +F + +  KV HGAD DI+WLQRDF IYV NLFDT +A  VL   +
Sbjct: 172 IFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKLER 231

Query: 245 KSLAYLLETYCGVSTNKMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNE 304
            SL +LL+ YCGV+ NK  Q+ DWR RPL   M +YAR D HYLLYI + +  EL  + +
Sbjct: 232 NSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELHTMAK 291

Query: 305 NSSTDDKFNFILEASRRSNMTCLQLYSKETEGSPGESAASSISSRHLNSQCGSTLISCKT 364
                D  + ++E  +RS   C+QLY KE            + + +LN+   S       
Sbjct: 292 EDEQSD--SPLVEVYKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLNAVQLSI------ 351

Query: 365 QFQDHVRRLCAWRDLMARVHDESLRYVLSDQAIVALANQV 403
                V  LC WRD +AR  DES  YVL ++ +  +A ++
Sbjct: 352 -----VAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEM 375

[Close]

BLAST of ClCG02G001940 vs. ExPASy Swiss-Prot
Match: Q10146 (Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp6 PE=3 SV=2)

HSP 1 Score: 194.1 bits (492), Expect = 6.8e-48
Identity = 126/322 (39.13%), Postives = 174/322 (54.04%), Query Frame = 0


Query: 98  HPYESEILSLLENS--SPEFDFISERTDLTLSDTY--VWVETESQLEELVDVLNKEMVFA 157
           HPYE EI    +NS   P    +S   D    D    +WV TESQL +++  L      A
Sbjct: 186 HPYEPEI----QNSVYPPWVSEMSNPIDTGSVDETEPIWVSTESQLSDMLKELQNSKEIA 245

Query: 158 VDTEQHSLRSFLGFTALIQISTHEEDYLVDTIALHDSMNLLRPVFANSRICKVFHGADND 217
           VD E H  RSF GF  L+QIS  E+D++VDT+ L + +  L  VF N  I KVFHGA  D
Sbjct: 246 VDLEHHDYRSFRGFVCLMQISNREKDWIVDTLELREELEALNVVFTNPNIIKVFHGATMD 305

Query: 218 ILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVSTNKMLQREDWRQRPLSA 277
           I+WLQRDF +YVVNLFDT  A +VL      LA+LL+ YC    +K  Q  DWR RPL  
Sbjct: 306 IIWLQRDFGLYVVNLFDTYYATKVLGFEGHGLAFLLQKYCDYDADKRYQMADWRIRPLPR 365

Query: 278 DMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNFILEASRRSNMTCLQLYSKETE 337
           +M++YA++D HYLLYI + L  EL     + S + K N +      S    L+ Y  E E
Sbjct: 366 EMLKYAQSDTHYLLYIWDHLRNEL----ISKSAERKENLMQSVFNSSKQISLRKY--ELE 425

Query: 338 GSPGESAASSISSRHLNSQCGSTLISCKTQFQDHVRRLCAWRDLMARVHDESLRYVLSDQ 397
                    +   R++ ++ GS+ I  +     + R L  WRD +AR  DES+RYVL ++
Sbjct: 426 PYDPIYGLGTDGWRNVLTKFGSSKIIGREALMIY-RALHDWRDSVARKEDESVRYVLPNR 485

Query: 398 AIVALANQVSKNKGELYATISQ 416
            ++A+A        ++++   Q
Sbjct: 486 LLIAIAASKPVEAADVFSISKQ 496

[Close]

BLAST of ClCG02G001940 vs. ExPASy Swiss-Prot
Match: P56960 (Exosome component 10 OS=Mus musculus OX=10090 GN=Exosc10 PE=1 SV=2)

HSP 1 Score: 191.0 bits (484), Expect = 5.7e-47
Identity = 127/333 (38.14%), Postives = 176/333 (52.85%), Query Frame = 0


Query: 82  FKHLELNMNKDKDVNSHPYESEI------LSLLENSSPEFDFISERTDLTLSDTYVWVET 141
           F H +     ++D+ +HPY+ E+       S+L+   P+       T   L         
Sbjct: 240 FIHQQRTQQVEQDMFAHPYQYELDHFTPPQSVLQRPKPQLYRAVGETPCHL--------- 299

Query: 142 ESQLEELVDVLNKEMV----FAVDTEQHSLRSFLGFTALIQISTHEEDYLVDTIALHDSM 201
            S L+ELV+ LN++++    FAVD E HS RSFLG T L+QIST  ED++VDT+ L   M
Sbjct: 300 VSSLDELVE-LNEKLLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLELRSDM 359

Query: 202 NLLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLET 261
            +L     +  I KVFHGAD+DI WLQ+DF +YVVN+FDT +A  +L+  + SL +LL  
Sbjct: 360 YILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLARHSLDHLLRL 419

Query: 262 YCGVSTNKMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFN 321
           YCGV +NK  Q  DWR RPL  +M+ YAR D HYLLYI + +  EL +   +        
Sbjct: 420 YCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDRMRLELWERGNHQPVQ---- 479

Query: 322 FILEASRRSNMTCLQLYSKETEGSPGESAASSISSRHLNSQCGSTLISCKTQFQDHVRRL 381
            +    +RS   CL+ + K                +HLNSQ         T FQ     L
Sbjct: 480 -LQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQ-------QLTAFQ----LL 539

Query: 382 CAWRDLMARVHDESLRYVLSDQAIVALANQVSK 405
            AWRD  AR  DES  YVL +  ++ +A ++ K
Sbjct: 540 FAWRDKTARREDESYGYVLPNHMMLKIAEELPK 546

[Close]

BLAST of ClCG02G001940 vs. ExPASy TrEMBL
Match: A0A0A0K254 (HRDC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G043600 PE=4 SV=1)

HSP 1 Score: 1641.3 bits (4249), Expect = 0.0e+00
Identity = 827/890 (92.92%), Postives = 847/890 (95.17%), Query Frame = 0


Query: 21  MELQHKVKIALVVASFAALTILFTTRQRRKRRSVRSSCYLRDDQKPQCAFKRVLADNSYS 80
           MELQHK+KIALVVASFAALTILFT R+RRKRRSV +SCYLRDDQKPQ AFKRVLADNSYS
Sbjct: 1   MELQHKLKIALVVASFAALTILFTARRRRKRRSVSTSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 81  AFKHLELNMNKDKDVNSHPYESEILSLLENSSPEFDFISERTDLTLSDTYVWVETESQLE 140
           AFKHL+LNMNKD DVNSHPYESEILSLLENSSPEF+FISERTDLTLSDTY WVET SQLE
Sbjct: 61  AFKHLKLNMNKDNDVNSHPYESEILSLLENSSPEFNFISERTDLTLSDTYAWVETVSQLE 120

Query: 141 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHEEDYLVDTIALHDSMNLLRPVFAN 200
           ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTH+EDYLVDTIALHDSMNLLRPVFAN
Sbjct: 121 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHKEDYLVDTIALHDSMNLLRPVFAN 180

Query: 201 SRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVSTNKM 260
           SRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGV+TNKM
Sbjct: 181 SRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKM 240

Query: 261 LQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNFILEASRRS 320
           LQREDWRQRPL ADMVQYARTDAHYLLYIANCLL ELKQVNENSSTDDKFNF+LEASRRS
Sbjct: 241 LQREDWRQRPLPADMVQYARTDAHYLLYIANCLLVELKQVNENSSTDDKFNFLLEASRRS 300

Query: 321 NMTCLQLYSKETEGSPGESAASSISSRHLNSQCGSTLISCKTQFQDHVRRLCAWRDLMAR 380
           NMTCLQLYSKETEGSPGESAASSI SRHLNSQ GS LISCKTQFQD VRRLCAWRDLMAR
Sbjct: 301 NMTCLQLYSKETEGSPGESAASSIWSRHLNSQGGSALISCKTQFQDRVRRLCAWRDLMAR 360

Query: 381 VHDESLRYVLSDQAIVALANQVSKNKGELYATISQADLNVDLGSRLFLPSPSPVVCSHLD 440
           VHDESLRYVLSDQAIVA+A QV KN GELYATI+Q DLNVDL S LFLPSPS VVCSHLD
Sbjct: 361 VHDESLRYVLSDQAIVAIAIQVPKNTGELYATIAQVDLNVDLSSSLFLPSPSSVVCSHLD 420

Query: 441 DIHHLLHDKSGDLDNIFLVILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKHNDRKN- 500
           DIH LLHD  GDLDNIFLVILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKHNDRKN 
Sbjct: 421 DIHCLLHDNFGDLDNIFLVILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKHNDRKNA 480

Query: 501 KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWSQLSSNLNRYLRRE 560
           KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEW         YLRRE
Sbjct: 481 KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEW---------YLRRE 540

Query: 561 LAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIH 620
           LAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYR+H
Sbjct: 541 LAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRVH 600

Query: 621 FPEHLKSHRSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFDM-AE 680
           FPEHLKSHRSHDIVLLCVDCHE AHAAAEK+KRELAAEFGIPLFVRRVVDTKEAFDM AE
Sbjct: 601 FPEHLKSHRSHDIVLLCVDCHETAHAAAEKYKRELAAEFGIPLFVRRVVDTKEAFDMAAE 660

Query: 681 PSDSGTNVEEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGRREISEEDLER 740
           PSDS TNV+EEGVSPLELRTAAMALLRHGPRMP KRQEELM +VM+YYGRREISEEDLER
Sbjct: 661 PSDSETNVQEEGVSPLELRTAAMALLRHGPRMPLKRQEELMFVVMKYYGRREISEEDLER 720

Query: 741 ALLVGMSPHERRRLQKKKGLAFKHSAQSVFPDAEHQHGACNIDTSTVVNSSVDANNHMNS 800
           ALLVGMSPHERRRLQKKKGLAFKHS QSVFPDAE Q+GACNIDTSTV +SSVD NNHMNS
Sbjct: 721 ALLVGMSPHERRRLQKKKGLAFKHSPQSVFPDAERQNGACNIDTSTVDSSSVDVNNHMNS 780

Query: 801 DSGSVSETCVPGGEVNFSDNGYAKTAQPKFNSKLSLLGHGPHGKLVVDHLLREYGEDGIR 860
           DSGSVSETCVPGGEV+FSDNGYAKTAQPKFNSKLSLLGHGPHGKLVVD+LL+EYGEDGIR
Sbjct: 781 DSGSVSETCVPGGEVSFSDNGYAKTAQPKFNSKLSLLGHGPHGKLVVDYLLKEYGEDGIR 840

Query: 861 QFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKASPANE 909
           QFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKA P NE
Sbjct: 841 QFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKAFPDNE 881

[Close]

BLAST of ClCG02G001940 vs. ExPASy TrEMBL
Match: A0A1S3C120 (protein RRP6-like 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495596 PE=4 SV=1)

HSP 1 Score: 1632.5 bits (4226), Expect = 0.0e+00
Identity = 824/890 (92.58%), Postives = 843/890 (94.72%), Query Frame = 0


Query: 21  MELQHKVKIALVVASFAALTILFTTRQRRKRRSVRSSCYLRDDQKPQCAFKRVLADNSYS 80
           MELQHKVKIALVVASFAALTILFT R+RRKRRS  +SCYLRDDQKPQ AFKRVLADNSYS
Sbjct: 1   MELQHKVKIALVVASFAALTILFTARRRRKRRSGSTSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 81  AFKHLELNMNKDKDVNSHPYESEILSLLENSSPEFDFISERTDLTLSDTYVWVETESQLE 140
           AFKHL+LNMNKD DVNSHPYESEILSLLENSSPE +FISERTDLTLSDTY WVETESQLE
Sbjct: 61  AFKHLKLNMNKDNDVNSHPYESEILSLLENSSPELNFISERTDLTLSDTYAWVETESQLE 120

Query: 141 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHEEDYLVDTIALHDSMNLLRPVFAN 200
           ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTH+EDYLVDTIALHDSMNLLRPVFAN
Sbjct: 121 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHKEDYLVDTIALHDSMNLLRPVFAN 180

Query: 201 SRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVSTNKM 260
             ICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKP KSLAYLLETYC V+TNKM
Sbjct: 181 RSICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPMKSLAYLLETYCRVATNKM 240

Query: 261 LQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNFILEASRRS 320
           LQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNF+LEASRRS
Sbjct: 241 LQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNFLLEASRRS 300

Query: 321 NMTCLQLYSKETEGSPGESAASSISSRHLNSQCGSTLISCKTQFQDHVRRLCAWRDLMAR 380
           NMTCLQLYSKETEGSPGESAASSISSRHLNSQ GS LISCKTQFQD VRRLCAWRDLMAR
Sbjct: 301 NMTCLQLYSKETEGSPGESAASSISSRHLNSQGGSALISCKTQFQDRVRRLCAWRDLMAR 360

Query: 381 VHDESLRYVLSDQAIVALANQVSKNKGELYATISQADLNVDLGSRLFLPSPSPVVCSHLD 440
           VHDESLRYVLSDQAI+A+A QV K+ GELYATI+QADLNVDL S  FLPSPS VVCSHLD
Sbjct: 361 VHDESLRYVLSDQAILAIAIQVPKSTGELYATIAQADLNVDLSSSPFLPSPSSVVCSHLD 420

Query: 441 DIHHLLHDKSGDLDNIFLVILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKHNDRKN- 500
           DIH LLHD  GDLD  FL ILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKHNDRKN 
Sbjct: 421 DIHCLLHDNFGDLDRFFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKHNDRKNA 480

Query: 501 KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWSQLSSNLNRYLRRE 560
           KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEW         YLRRE
Sbjct: 481 KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEW---------YLRRE 540

Query: 561 LAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIH 620
           LAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIH
Sbjct: 541 LAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIH 600

Query: 621 FPEHLKSHRSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFDM-AE 680
           FPEHLKSHRSHDIVLLCVDCHE AHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFDM AE
Sbjct: 601 FPEHLKSHRSHDIVLLCVDCHETAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFDMAAE 660

Query: 681 PSDSGTNVEEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGRREISEEDLER 740
           PSDS TNV EEGVSPLELRTAAMALLRHGPRMP KRQEELML+VM+YYGRREISEEDLER
Sbjct: 661 PSDSETNVHEEGVSPLELRTAAMALLRHGPRMPLKRQEELMLVVMKYYGRREISEEDLER 720

Query: 741 ALLVGMSPHERRRLQKKKGLAFKHSAQSVFPDAEHQHGACNIDTSTVVNSSVDANNHMNS 800
           ALLVGMSPHERRR+QKKKGLAFKHS QSVFPDAEHQ+GACNIDTSTV NSSVD NNHMNS
Sbjct: 721 ALLVGMSPHERRRVQKKKGLAFKHSPQSVFPDAEHQNGACNIDTSTVDNSSVDVNNHMNS 780

Query: 801 DSGSVSETCVPGGEVNFSDNGYAKTAQPKFNSKLSLLGHGPHGKLVVDHLLREYGEDGIR 860
           DSGSVS+TC PGGEV+FSDNGYAKTAQPKFNSKLSLLGHGPHGKLVVD+LL+EY EDGIR
Sbjct: 781 DSGSVSDTCGPGGEVSFSDNGYAKTAQPKFNSKLSLLGHGPHGKLVVDYLLKEYHEDGIR 840

Query: 861 QFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKASPANE 909
           QFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKASPANE
Sbjct: 841 QFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKASPANE 881

[Close]

BLAST of ClCG02G001940 vs. ExPASy TrEMBL
Match: A0A6J1C5X3 (protein RRP6-like 3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007668 PE=4 SV=1)

HSP 1 Score: 1583.2 bits (4098), Expect = 0.0e+00
Identity = 794/890 (89.21%), Postives = 833/890 (93.60%), Query Frame = 0


Query: 21  MELQHKVKIALVVASFAALTILFTTRQRRKRRSVRSSCYLR-DDQKPQCAFKRVLADNSY 80
           MEL+HKVKI L VASFAALTILFT R+RRK++SVRSSCYLR DDQK Q  FKRVLADNSY
Sbjct: 1   MELKHKVKIVLAVASFAALTILFTARRRRKQKSVRSSCYLRGDDQKXQYTFKRVLADNSY 60

Query: 81  SAFKHLELNMNKDKDVNSHPYESEILSLLENSSPEFDFISERTDLTLSDTYVWVETESQL 140
           S FKHL+LNMN D DVNSHPYESEILSLLENS PE+DF+SER D T SD YVWVETESQL
Sbjct: 61  SVFKHLKLNMNTDNDVNSHPYESEILSLLENSFPEYDFVSERKDFTSSDAYVWVETESQL 120

Query: 141 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHEEDYLVDTIALHDSMNLLRPVFA 200
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQIST +EDYLVD IALHDSMNLLRP+FA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTRKEDYLVDAIALHDSMNLLRPIFA 180

Query: 201 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVSTNK 260
           NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACE+LSKPQKSLAYLLETYCGV+TNK
Sbjct: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACELLSKPQKSLAYLLETYCGVATNK 240

Query: 261 MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNFILEASRR 320
           MLQREDWRQRPLSA+MVQYARTDAHYLL+IANCLL ELKQVNENSSTDDKFNF+LEASRR
Sbjct: 241 MLQREDWRQRPLSAEMVQYARTDAHYLLHIANCLLSELKQVNENSSTDDKFNFLLEASRR 300

Query: 321 SNMTCLQLYSKETEGSPGESAASSISSRHLNSQCGSTLISCKTQFQDHVRRLCAWRDLMA 380
           SNM CLQLY+KETEGSPGESAASSISSR LNSQ  ST+ISCKTQFQD VRRLCAWRDLMA
Sbjct: 301 SNMICLQLYAKETEGSPGESAASSISSRRLNSQGVSTIISCKTQFQDLVRRLCAWRDLMA 360

Query: 381 RVHDESLRYVLSDQAIVALANQVSKNKGELYATISQADLNVDLGSRLFLPSPSPVVCSHL 440
           RVHDESLRYVLSDQAIVALAN+V KN  ELYATI+QADL+VDL   LFLPSPSPVVCSHL
Sbjct: 361 RVHDESLRYVLSDQAIVALANKVPKNTMELYATIAQADLHVDLSPSLFLPSPSPVVCSHL 420

Query: 441 DDIHHLLHDKSGDLDNIFLVILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKHNDRKN 500
           DD+H LLHDKSGDLDNIFLVILQNCIGS+GSCPLSIFNYALLVKYNLKMMTISKHN RKN
Sbjct: 421 DDLHCLLHDKSGDLDNIFLVILQNCIGSDGSCPLSIFNYALLVKYNLKMMTISKHNHRKN 480

Query: 501 -KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWSQLSSNLNRYLRR 560
            KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEW         Y+RR
Sbjct: 481 AKQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEW---------YVRR 540

Query: 561 ELAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRI 620
           ELAELV DDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRI
Sbjct: 541 ELAELVDDDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRI 600

Query: 621 HFPEHLKSHRSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFDMAE 680
           HFPEHLKSHRSHDIVLLCVDCHE AHAAAEKHKRELAAEFGIPLFVRRVVDTKEAF++AE
Sbjct: 601 HFPEHLKSHRSHDIVLLCVDCHEIAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFNLAE 660

Query: 681 PSDSGTNVEEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGRREISEEDLER 740
           PSDSGTN +EEGVSPLELRTAAMALLRHGPRMPSKRQEELML VMRYYGRREISEEDLER
Sbjct: 661 PSDSGTNFQEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLTVMRYYGRREISEEDLER 720

Query: 741 ALLVGMSPHERRRLQKKKGLAFKHSAQSVFPDAEHQHGACNIDTSTVVNSSVDANNHMNS 800
           ALLVGMSPHERRRLQKK+G+A KHSAQS FP+AEHQ+GAC+IDTST VNSSVD N+H NS
Sbjct: 721 ALLVGMSPHERRRLQKKRGIALKHSAQSNFPNAEHQNGACDIDTSTAVNSSVDINSHTNS 780

Query: 801 DSGSVSETCVPGGEVNFSDNGYAKTAQPKFNSKLSLLGHGPHGKLVVDHLLREYGEDGIR 860
           DSGSVS+ C+PGG+V FSDNG A+TAQPKFN KLSLLGHGPHGK VVDHLLREYGE+GIR
Sbjct: 781 DSGSVSDKCLPGGQVGFSDNGSARTAQPKFNPKLSLLGHGPHGKQVVDHLLREYGEEGIR 840

Query: 861 QFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKASPANE 909
           QFCQRWRQVFVAA +PRFLPAGWDVNHSGRRDFGEFS+YNP KKASP+NE
Sbjct: 841 QFCQRWRQVFVAATKPRFLPAGWDVNHSGRRDFGEFSVYNPIKKASPSNE 881

[Close]

BLAST of ClCG02G001940 vs. ExPASy TrEMBL
Match: A0A5A7T9W4 (Protein RRP6-like 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold888G00270 PE=4 SV=1)

HSP 1 Score: 1570.8 bits (4066), Expect = 0.0e+00
Identity = 804/916 (87.77%), Postives = 831/916 (90.72%), Query Frame = 0


Query: 21  MELQHKVKIALVVASFAALTILFTTRQRRKRRSVRSSCYLRDDQKPQCAFKRVLADNSYS 80
           MELQHKVKIALVVASFAALTILFT R+RRKRRS  +SCYLRDDQKPQ AFKRVLADNSYS
Sbjct: 1   MELQHKVKIALVVASFAALTILFTARRRRKRRSGSTSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 81  AFKHLELNMNKDKDVNSHPYESEILSLLENSSPEFDFISERTDLTLSDTYVWVETESQLE 140
           AFKHL+LNMNKD DVNSHPYESEILSLLENSSPE +FISERTDLTLSDTY WVETESQL+
Sbjct: 61  AFKHLKLNMNKDNDVNSHPYESEILSLLENSSPELNFISERTDLTLSDTYAWVETESQLK 120

Query: 141 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHEEDYLVDTIALHDSMNLLRPVFAN 200
           ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTH+EDYLVDTIALHDSMNLLRPVFAN
Sbjct: 121 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHKEDYLVDTIALHDSMNLLRPVFAN 180

Query: 201 SRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVSTNKM 260
             ICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKP KSLAYLLETYC V+TNKM
Sbjct: 181 RSICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPMKSLAYLLETYCRVATNKM 240

Query: 261 LQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNFILEASRRS 320
           LQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNF+LEASRRS
Sbjct: 241 LQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNFLLEASRRS 300

Query: 321 NMTCLQLYSKETEGSPGESAASSISSRHLNSQCGSTLISCKT------------------ 380
           NMTCLQLYSKETEGSPGESAASSISSRHLNSQ GS LISCKT                  
Sbjct: 301 NMTCLQLYSKETEGSPGESAASSISSRHLNSQGGSALISCKTQVSCPPDDFDGVTFEAVS 360

Query: 381 --------QFQDHVRRLCAWRDLMARVHDESLRYVLSDQAIVALANQVSKNKGELYATIS 440
                   QFQD VRRLCAWRDLMARVHDESLRYVLSDQAI+A+A QV K+ GELYATI+
Sbjct: 361 YTNLCFLIQFQDRVRRLCAWRDLMARVHDESLRYVLSDQAILAIAIQVPKSTGELYATIA 420

Query: 441 QADLNVDLGSRLFLPSPSPVVCSHLDDIHHLLHDKSGDLDNIFLVILQNCIGSNGSCPLS 500
           QADLNVDL S  FLPSPS VVCSHLDDIH LLH+  GDLD  FL ILQNCIGSNGSCPLS
Sbjct: 421 QADLNVDLSSSPFLPSPSSVVCSHLDDIHCLLHNNFGDLDKFFLGILQNCIGSNGSCPLS 480

Query: 501 IFNYALLVKYNLKMMTISKHNDRKN-KQISKKASRELFVQKFSCKSPVYHNCRIYANDGR 560
           IFNYALLVKYNLKMMTISKHNDRKN KQISKKASRELFVQKFSCKSPVYHNCRIYANDGR
Sbjct: 481 IFNYALLVKYNLKMMTISKHNDRKNAKQISKKASRELFVQKFSCKSPVYHNCRIYANDGR 540

Query: 561 LLCYCDRRKLEWSQLSSNLNRYLRRELAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSK 620
           LLCYCDRRKLEW         YLRRELAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSK
Sbjct: 541 LLCYCDRRKLEW---------YLRRELAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSK 600

Query: 621 KNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEAAHAAAEKHKRE 680
           KNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHE AHAAAEKHKRE
Sbjct: 601 KNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHETAHAAAEKHKRE 660

Query: 681 LAAEFGIPLFVRRVVDTKEAFDM-AEPSDSGTNVEEEGVSPLELRTAAMALLRHGPRMPS 740
           LAAEFGIPLFVRRVVDTKEAFDM AEPSDS TNV EEGVSPLELRTAAMALLRHGPRMP 
Sbjct: 661 LAAEFGIPLFVRRVVDTKEAFDMAAEPSDSETNVHEEGVSPLELRTAAMALLRHGPRMPL 720

Query: 741 KRQEELMLIVMRYYGRREISEEDLERALLVGMSPHERRRLQKKKGLAFKHSAQSVFPDAE 800
           KRQEELML+VM+YYGRREISEEDLERALLVGMSPHERRR+QKKKGLAFKHS QSVFPDAE
Sbjct: 721 KRQEELMLVVMKYYGRREISEEDLERALLVGMSPHERRRVQKKKGLAFKHSPQSVFPDAE 780

Query: 801 HQHGACNIDTSTVVNSSVDANNHMNSDSGSVSETCVPGGEVNFSDNGYAKTAQPKFNSKL 860
           HQ+GACNIDTSTV NSSVD NNHMNSDSGSVS+TC PGGEV+FSDNGYAKTAQPKFNSKL
Sbjct: 781 HQNGACNIDTSTVDNSSVDVNNHMNSDSGSVSDTCGPGGEVSFSDNGYAKTAQPKFNSKL 840

Query: 861 SLLGHGPHGKLVVDHLLREYGEDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFG 909
           SLLGHGPHGKLVVD+LL+EY EDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNH   +++ 
Sbjct: 841 SLLGHGPHGKLVVDYLLKEYHEDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNHRPNKEW- 900

[Close]

BLAST of ClCG02G001940 vs. ExPASy TrEMBL
Match: A0A6J1C2I3 (protein RRP6-like 3 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007668 PE=4 SV=1)

HSP 1 Score: 1541.6 bits (3990), Expect = 0.0e+00
Identity = 774/867 (89.27%), Postives = 811/867 (93.54%), Query Frame = 0


Query: 21  MELQHKVKIALVVASFAALTILFTTRQRRKRRSVRSSCYLR-DDQKPQCAFKRVLADNSY 80
           MEL+HKVKI L VASFAALTILFT R+RRK++SVRSSCYLR DDQK Q  FKRVLADNSY
Sbjct: 1   MELKHKVKIVLAVASFAALTILFTARRRRKQKSVRSSCYLRGDDQKXQYTFKRVLADNSY 60

Query: 81  SAFKHLELNMNKDKDVNSHPYESEILSLLENSSPEFDFISERTDLTLSDTYVWVETESQL 140
           S FKHL+LNMN D DVNSHPYESEILSLLENS PE+DF+SER D T SD YVWVETESQL
Sbjct: 61  SVFKHLKLNMNTDNDVNSHPYESEILSLLENSFPEYDFVSERKDFTSSDAYVWVETESQL 120

Query: 141 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHEEDYLVDTIALHDSMNLLRPVFA 200
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQIST +EDYLVD IALHDSMNLLRP+FA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTRKEDYLVDAIALHDSMNLLRPIFA 180

Query: 201 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVSTNK 260
           NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACE+LSKPQKSLAYLLETYCGV+TNK
Sbjct: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACELLSKPQKSLAYLLETYCGVATNK 240

Query: 261 MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNFILEASRR 320
           MLQREDWRQRPLSA+MVQYARTDAHYLL+IANCLL ELKQVNENSSTDDKFNF+LEASRR
Sbjct: 241 MLQREDWRQRPLSAEMVQYARTDAHYLLHIANCLLSELKQVNENSSTDDKFNFLLEASRR 300

Query: 321 SNMTCLQLYSKETEGSPGESAASSISSRHLNSQCGSTLISCKTQFQDHVRRLCAWRDLMA 380
           SNM CLQLY+KETEGSPGESAASSISSR LNSQ  ST+ISCKTQFQD VRRLCAWRDLMA
Sbjct: 301 SNMICLQLYAKETEGSPGESAASSISSRRLNSQGVSTIISCKTQFQDLVRRLCAWRDLMA 360

Query: 381 RVHDESLRYVLSDQAIVALANQVSKNKGELYATISQADLNVDLGSRLFLPSPSPVVCSHL 440
           RVHDESLRYVLSDQAIVALAN+V KN  ELYATI+QADL+VDL   LFLPSPSPVVCSHL
Sbjct: 361 RVHDESLRYVLSDQAIVALANKVPKNTMELYATIAQADLHVDLSPSLFLPSPSPVVCSHL 420

Query: 441 DDIHHLLHDKSGDLDNIFLVILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKHNDRKN 500
           DD+H LLHDKSGDLDNIFLVILQNCIGS+GSCPLSIFNYALLVKYNLKMMTISKHN RKN
Sbjct: 421 DDLHCLLHDKSGDLDNIFLVILQNCIGSDGSCPLSIFNYALLVKYNLKMMTISKHNHRKN 480

Query: 501 -KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWSQLSSNLNRYLRR 560
            KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEW         Y+RR
Sbjct: 481 AKQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEW---------YVRR 540

Query: 561 ELAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRI 620
           ELAELV DDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRI
Sbjct: 541 ELAELVDDDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRI 600

Query: 621 HFPEHLKSHRSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFDMAE 680
           HFPEHLKSHRSHDIVLLCVDCHE AHAAAEKHKRELAAEFGIPLFVRRVVDTKEAF++AE
Sbjct: 601 HFPEHLKSHRSHDIVLLCVDCHEIAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFNLAE 660

Query: 681 PSDSGTNVEEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGRREISEEDLER 740
           PSDSGTN +EEGVSPLELRTAAMALLRHGPRMPSKRQEELML VMRYYGRREISEEDLER
Sbjct: 661 PSDSGTNFQEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLTVMRYYGRREISEEDLER 720

Query: 741 ALLVGMSPHERRRLQKKKGLAFKHSAQSVFPDAEHQHGACNIDTSTVVNSSVDANNHMNS 800
           ALLVGMSPHERRRLQKK+G+A KHSAQS FP+AEHQ+GAC+IDTST VNSSVD N+H NS
Sbjct: 721 ALLVGMSPHERRRLQKKRGIALKHSAQSNFPNAEHQNGACDIDTSTAVNSSVDINSHTNS 780

Query: 801 DSGSVSETCVPGGEVNFSDNGYAKTAQPKFNSKLSLLGHGPHGKLVVDHLLREYGEDGIR 860
           DSGSVS+ C+PGG+V FSDNG A+TAQPKFN KLSLLGHGPHGK VVDHLLREYGE+GIR
Sbjct: 781 DSGSVSDKCLPGGQVGFSDNGSARTAQPKFNPKLSLLGHGPHGKQVVDHLLREYGEEGIR 840

Query: 861 QFCQRWRQVFVAAIQPRFLPAGWDVNH 886
           QFCQRWRQVFVAA +PRFLPAGWDVNH
Sbjct: 841 QFCQRWRQVFVAATKPRFLPAGWDVNH 858

[Close]

BLAST of ClCG02G001940 vs. TAIR 10
Match: AT2G32415.1 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain )

HSP 1 Score: 1109.0 bits (2867), Expect = 0.0e+00
Identity = 571/906 (63.02%), Postives = 697/906 (76.93%), Query Frame = 0


Query: 21  MELQHKVKIALVVASFAALTILFTT-----RQRRKRRSVRSSCYLRDDQKPQCAFKRVLA 80
           MEL+ K K+ + VAS  A+TILF T     RQRRK+ S  SSCYL  + KPQ  FKRVLA
Sbjct: 1   MELKEKAKVVITVASLVAVTILFVTEYRRRRQRRKQTSSLSSCYLHSELKPQFGFKRVLA 60

Query: 81  DNSYSAFKHLEL----NMNKDKDVNSHPYESEILSLLENSSPEFDFISERTDLTLSDTYV 140
           DNSYS FKHL+L    + + +K  N HPYE+EI  LLEN   EF F+     L +SD+YV
Sbjct: 61  DNSYSEFKHLKLVDASSSSLEKPSNGHPYETEITVLLENPQIEFGFLRGECSLEMSDSYV 120

Query: 141 WVETESQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHEEDYLVDTIALHDSM 200
           WVETESQL+EL ++L KE VFAVDTEQHSLRSFLGFTALIQISTHEED+LVDTIALHD M
Sbjct: 121 WVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIALHDVM 180

Query: 201 NLLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLET 260
           ++LRPVF++  ICKVFHGADND++WLQRDFHIYVVN+FDTAKACEVLSKPQ+SLAYLLET
Sbjct: 181 SILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLET 240

Query: 261 YCGVSTNKMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQV-NENSSTDDKF 320
            CGV+TNK+LQREDWRQRPLS +MV+YARTDAHYLLYIA+ L  ELKQ+  ++SS DD+F
Sbjct: 241 VCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLATDSSSPDDRF 300

Query: 321 NFILEASRRSNMTCLQLYSKETEGSPGESAASSISSRHLNSQCGSTLISCKTQFQDHVRR 380
           +F+LEASRRSNMTCLQLY+KETE  PG +A+SSI  RHLN     + IS     ++ VR+
Sbjct: 301 HFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLNGHGDKSNISLNA--EELVRK 360

Query: 381 LCAWRDLMARVHDESLRYVLSDQAIVALANQVSKNKGELYATISQADLNVDLGSRL--FL 440
           LCAWRDLM R+HDES RYVLSDQAIV L+ +      E+Y TI+  DL  +    L   +
Sbjct: 361 LCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEIYDTIAHIDLATESSPSLSSSV 420

Query: 441 PSPSPVVCSHLDDIHHLLHDKSGDLDNIFLVILQNCIGSNGSCPLSIFNYALLVKYNLKM 500
            SP PV+CSHLDDI+ ++ DK   LD++  V+L+ C+G+NG+CP+S+FNY+LLV +  K+
Sbjct: 421 QSPYPVICSHLDDIYKMILDKLAKLDDLLPVVLKKCLGTNGTCPISVFNYSLLVNFKTKL 480

Query: 501 MTIS--KHNDRKN--KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLE 560
            + S  K N  KN  +Q ++KASRELFV+KFSCK+PVYHNCRIYANDGRLLCYCD+RKLE
Sbjct: 481 SSHSAPKQNGHKNFKQQFTRKASRELFVKKFSCKAPVYHNCRIYANDGRLLCYCDKRKLE 540

Query: 561 WSQLSSNLNRYLRRELAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGN 620
           W         YL R LA+LV ++PPAI LLFEPKGRPEDEGNDFYIQ+K+NICVGCGEG 
Sbjct: 541 W---------YLNRGLAKLVEENPPAIMLLFEPKGRPEDEGNDFYIQTKRNICVGCGEGK 600

Query: 621 HYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFV 680
           HYLRYRIIPSCYR+HFPEHLKSHRSHDIVLLCVDCHE AHAAAE++K+++A EFGIPLFV
Sbjct: 601 HYLRYRIIPSCYRVHFPEHLKSHRSHDIVLLCVDCHEVAHAAAERYKKQIATEFGIPLFV 660

Query: 681 RRVVDTKEA---FDMAEPSDSGTNVEEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLI 740
           RRV+D+KEA     + E   +G + E+ GVSPL LR+AAMALLRHG RMPS R+EEL+  
Sbjct: 661 RRVLDSKEAQGTSSLVEDESTGDS-EDAGVSPLHLRSAAMALLRHGNRMPSSRREELLQT 720

Query: 741 VMRYYGRREISEEDLERALLVGMSPHERRRLQKKKGLAFKHSAQSVFPDA---EHQHGAC 800
           V  YYG R++SEEDLE+ALL+G+SPHERR+L++KKG++FKHSA+    D    E+  G  
Sbjct: 721 VKMYYGGRDLSEEDLEKALLIGLSPHERRKLERKKGVSFKHSAEVAGMDKQEDENNDGEA 780

Query: 801 NIDTSTVVNSSVDANNHMNSDSGSVSETCVPGGEVNFSDNGYAKTAQPKFNSKLSLLGHG 860
             D   ++  +V+ +  ++      SE     G    +D         + NSKLSLLGHG
Sbjct: 781 LADFEKIM--TVERSTVVDDSGDGTSE---GDGAKELNDTQCNGNTLHQQNSKLSLLGHG 840

Query: 861 PHGKLVVDHLLREYGEDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYN 905
           PHGK +V++LLRE+GEDG+R FCQRWR+VFV A+ PR LP GW+V+HSGRRDFGEFS+YN
Sbjct: 841 PHGKQIVEYLLREHGEDGVRDFCQRWRKVFVDAVHPRHLPGGWNVSHSGRRDFGEFSVYN 889

[Close]

BLAST of ClCG02G001940 vs. TAIR 10
Match: AT2G32415.2 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain )

HSP 1 Score: 1077.0 bits (2784), Expect = 0.0e+00
Identity = 556/887 (62.68%), Postives = 680/887 (76.66%), Query Frame = 0


Query: 21  MELQHKVKIALVVASFAALTILFTT-----RQRRKRRSVRSSCYLRDDQKPQCAFKRVLA 80
           MEL+ K K+ + VAS  A+TILF T     RQRRK+ S  SSCYL  + KPQ  FKRVLA
Sbjct: 1   MELKEKAKVVITVASLVAVTILFVTEYRRRRQRRKQTSSLSSCYLHSELKPQFGFKRVLA 60

Query: 81  DNSYSAFKHLEL----NMNKDKDVNSHPYESEILSLLENSSPEFDFISERTDLTLSDTYV 140
           DNSYS FKHL+L    + + +K  N HPYE+EI  LLEN   EF F+     L +SD+YV
Sbjct: 61  DNSYSEFKHLKLVDASSSSLEKPSNGHPYETEITVLLENPQIEFGFLRGECSLEMSDSYV 120

Query: 141 WVETESQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHEEDYLVDTIALHDSM 200
           WVETESQL+EL ++L KE VFAVDTEQHSLRSFLGFTALIQISTHEED+LVDTIALHD M
Sbjct: 121 WVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIALHDVM 180

Query: 201 NLLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLET 260
           ++LRPVF++  ICKVFHGADND++WLQRDFHIYVVN+FDTAKACEVLSKPQ+SLAYLLET
Sbjct: 181 SILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLET 240

Query: 261 YCGVSTNKMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQV-NENSSTDDKF 320
            CGV+TNK+LQREDWRQRPLS +MV+YARTDAHYLLYIA+ L  ELKQ+  ++SS DD+F
Sbjct: 241 VCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLATDSSSPDDRF 300

Query: 321 NFILEASRRSNMTCLQLYSKETEGSPGESAASSISSRHLNSQCGSTLISCKTQFQDHVRR 380
           +F+LEASRRSNMTCLQLY+KETE  PG +A+SSI  RHLN     + IS     ++ VR+
Sbjct: 301 HFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLNGHGDKSNISLNA--EELVRK 360

Query: 381 LCAWRDLMARVHDESLRYVLSDQAIVALANQVSKNKGELYATISQADLNVDLGSRL--FL 440
           LCAWRDLM R+HDES RYVLSDQAIV L+ +      E+Y TI+  DL  +    L   +
Sbjct: 361 LCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEIYDTIAHIDLATESSPSLSSSV 420

Query: 441 PSPSPVVCSHLDDIHHLLHDKSGDLDNIFLVILQNCIGSNGSCPLSIFNYALLVKYNLKM 500
            SP PV+CSHLDDI+ ++ DK   LD++  V+L+ C+G+NG+CP+S+FNY+LLV +  K+
Sbjct: 421 QSPYPVICSHLDDIYKMILDKLAKLDDLLPVVLKKCLGTNGTCPISVFNYSLLVNFKTKL 480

Query: 501 MTIS--KHNDRKN--KQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLE 560
            + S  K N  KN  +Q ++KASRELFV+KFSCK+PVYHNCRIYANDGRLLCYCD+RKLE
Sbjct: 481 SSHSAPKQNGHKNFKQQFTRKASRELFVKKFSCKAPVYHNCRIYANDGRLLCYCDKRKLE 540

Query: 561 WSQLSSNLNRYLRRELAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGN 620
           W         YL R LA+LV ++PPAI LLFEPKGRPEDEGNDFYIQ+K+NICVGCGEG 
Sbjct: 541 W---------YLNRGLAKLVEENPPAIMLLFEPKGRPEDEGNDFYIQTKRNICVGCGEGK 600

Query: 621 HYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFV 680
           HYLRYRIIPSCYR+HFPEHLKSHRSHDIVLLCVDCHE AHAAAE++K+++A EFGIPLFV
Sbjct: 601 HYLRYRIIPSCYRVHFPEHLKSHRSHDIVLLCVDCHEVAHAAAERYKKQIATEFGIPLFV 660

Query: 681 RRVVDTKEA---FDMAEPSDSGTNVEEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLI 740
           RRV+D+KEA     + E   +G + E+ GVSPL LR+AAMALLRHG RMPS R+EEL+  
Sbjct: 661 RRVLDSKEAQGTSSLVEDESTGDS-EDAGVSPLHLRSAAMALLRHGNRMPSSRREELLQT 720

Query: 741 VMRYYGRREISEEDLERALLVGMSPHERRRLQKKKGLAFKHSAQSVFPDA---EHQHGAC 800
           V  YYG R++SEEDLE+ALL+G+SPHERR+L++KKG++FKHSA+    D    E+  G  
Sbjct: 721 VKMYYGGRDLSEEDLEKALLIGLSPHERRKLERKKGVSFKHSAEVAGMDKQEDENNDGEA 780

Query: 801 NIDTSTVVNSSVDANNHMNSDSGSVSETCVPGGEVNFSDNGYAKTAQPKFNSKLSLLGHG 860
             D   ++  +V+ +  ++      SE     G    +D         + NSKLSLLGHG
Sbjct: 781 LADFEKIM--TVERSTVVDDSGDGTSE---GDGAKELNDTQCNGNTLHQQNSKLSLLGHG 840

Query: 861 PHGKLVVDHLLREYGEDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNH 886
           PHGK +V++LLRE+GEDG+R FCQRWR+VFV A+ PR LP GW+V+H
Sbjct: 841 PHGKQIVEYLLREHGEDGVRDFCQRWRKVFVDAVHPRHLPGGWNVSH 870

[Close]

BLAST of ClCG02G001940 vs. TAIR 10
Match: AT5G35910.1 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain )

HSP 1 Score: 203.8 bits (517), Expect = 6.1e-52
Identity = 135/382 (35.34%), Postives = 203/382 (53.14%), Query Frame = 0


Query: 30  ALVVASFAALTILFTTRQRRKRRSVRSSCYLRDDQKPQCAFKRVLADNSYSAFKHLELNM 89
           A V    + + +    R +      +   ++   +KPQ  +  +L +N+   F+H+ L  
Sbjct: 162 AAVNGGGSVIDVKMAERDKNSSGKAKVPFHVPTIKKPQEEY-NILVNNANLPFEHVWLER 221

Query: 90  NKDKDVNSHPYESEILSLLENSSPEFDFISERTDLTLSDT-YVWVETESQLEELVDVLNK 149
           ++D     HP E    S+L+    + + +     L L  T + +V+    L+ELV  L  
Sbjct: 222 SEDDLRAMHPLEK--FSVLDFVDKDVNEMEPVKPLPLEQTPFKFVQEVKDLKELVAKLRS 281

Query: 150 EMVFAVDTEQHSLRSFLGFTALIQISTHEEDYLVDTIALHDSMN-LLRPVFANSRICKVF 209
              FAVD E +  RSF G T L+QIST  EDY+VDT  L   +   LR +F + +  KV 
Sbjct: 282 VEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVM 341

Query: 210 HGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVSTNKMLQREDWR 269
           HGAD DI+WLQRDF IYV NLFDT +A  VL+  + SL +LL+ +CGV+ NK  Q  DWR
Sbjct: 342 HGADRDIIWLQRDFGIYVCNLFDTGQASRVLNLERNSLEFLLQHFCGVTANKEYQNADWR 401

Query: 270 QRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNFILEASRRSNMTCLQL 329
            RPL  +M +YAR D HYLLYI + +  EL+++ ++ +  D  + +LE  +RS   C QL
Sbjct: 402 IRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHTD--SPLLEVYKRSYDVCTQL 461

Query: 330 YSKETEGSPGESAASSISSRHLNSQCGSTLISCKTQFQDHVRRLCAWRDLMARVHDESLR 389
           Y KE          +  S  H+     +   + +      V  LC WRD +AR  DES  
Sbjct: 462 YEKE--------LLTENSYLHVYGLQAAGFNAAQLAI---VAGLCEWRDFIARAEDESTG 521

Query: 390 YVLSDQAIVALANQVSKNKGEL 410
           YVL ++ ++ +A ++  + G+L
Sbjct: 522 YVLPNKVLLEIAKEMPDSVGKL 527

[Close]

BLAST of ClCG02G001940 vs. TAIR 10
Match: AT1G54440.1 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain )

HSP 1 Score: 201.4 bits (511), Expect = 3.0e-51
Identity = 132/340 (38.82%), Postives = 183/340 (53.82%), Query Frame = 0


Query: 65  KPQCAFKRVLADNSYSAFKHLELNMNKDKDVNSHPYESEILSLLENSSPEFDFISERTDL 124
           KPQ  +K +L DN+ + F+H+ L  ++D     HP E   LS+++        +     L
Sbjct: 52  KPQEEYK-ILVDNANNPFEHVLLEKSEDGLRFIHPLEE--LSVMDFVDRNLSEMRPVKPL 111

Query: 125 TLSDT-YVWVETESQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHEEDYLVD 184
            L +T +  VE    LE+L   L     FAVD E +  R+F G T L+QIST  EDY+VD
Sbjct: 112 PLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTEDYIVD 171

Query: 185 TIALHDSMN-LLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQ 244
              L D +   LR +F + +  KV HGAD DI+WLQRDF IYV NLFDT +A  VL   +
Sbjct: 172 IFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKLER 231

Query: 245 KSLAYLLETYCGVSTNKMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNE 304
            SL +LL+ YCGV+ NK  Q+ DWR RPL   M +YAR D HYLLYI + +  EL  + +
Sbjct: 232 NSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELHTMAK 291

Query: 305 NSSTDDKFNFILEASRRSNMTCLQLYSKETEGSPGESAASSISSRHLNSQCGSTLISCKT 364
                D  + ++E  +RS   C+QLY KE            + + +LN+   S       
Sbjct: 292 EDEQSD--SPLVEVYKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLNAVQLSI------ 351

Query: 365 QFQDHVRRLCAWRDLMARVHDESLRYVLSDQAIVALANQV 403
                V  LC WRD +AR  DES  YVL ++ +  +A ++
Sbjct: 352 -----VAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEM 375

[Close]

BLAST of ClCG02G001940 vs. TAIR 10
Match: AT1G54440.2 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain )

HSP 1 Score: 201.4 bits (511), Expect = 3.0e-51
Identity = 132/340 (38.82%), Postives = 183/340 (53.82%), Query Frame = 0


Query: 65  KPQCAFKRVLADNSYSAFKHLELNMNKDKDVNSHPYESEILSLLENSSPEFDFISERTDL 124
           KPQ  +K +L DN+ + F+H+ L  ++D     HP E   LS+++        +     L
Sbjct: 52  KPQEEYK-ILVDNANNPFEHVLLEKSEDGLRFIHPLEE--LSVMDFVDRNLSEMRPVKPL 111

Query: 125 TLSDT-YVWVETESQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHEEDYLVD 184
            L +T +  VE    LE+L   L     FAVD E +  R+F G T L+QIST  EDY+VD
Sbjct: 112 PLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTEDYIVD 171

Query: 185 TIALHDSMN-LLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQ 244
              L D +   LR +F + +  KV HGAD DI+WLQRDF IYV NLFDT +A  VL   +
Sbjct: 172 IFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKLER 231

Query: 245 KSLAYLLETYCGVSTNKMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNE 304
            SL +LL+ YCGV+ NK  Q+ DWR RPL   M +YAR D HYLLYI + +  EL  + +
Sbjct: 232 NSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELHTMAK 291

Query: 305 NSSTDDKFNFILEASRRSNMTCLQLYSKETEGSPGESAASSISSRHLNSQCGSTLISCKT 364
                D  + ++E  +RS   C+QLY KE            + + +LN+   S       
Sbjct: 292 EDEQSD--SPLVEVYKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLNAVQLSI------ 351

Query: 365 QFQDHVRRLCAWRDLMARVHDESLRYVLSDQAIVALANQV 403
                V  LC WRD +AR  DES  YVL ++ +  +A ++
Sbjct: 352 -----VAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEM 375

The following BLAST results are available for this feature:

BLAST of ClCG02G001940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658699.1	0.0e+00	92.92	protein RRP6-like 3 isoform X1 [Cucumis sativus] >KGN43518.1 hypothetical protei...	[more]
XP_038887745.1	0.0e+00	92.46	protein RRP6-like 3 [Benincasa hispida] >XP_038887746.1 protein RRP6-like 3 [Ben...	[more]
XP_008455438.1	0.0e+00	92.58	PREDICTED: protein RRP6-like 3 isoform X1 [Cucumis melo]	[more]
XP_022135803.1	0.0e+00	89.21	protein RRP6-like 3 isoform X1 [Momordica charantia]	[more]
KAA0040242.1	0.0e+00	87.77	protein RRP6-like 3 isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of ClCG02G001940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9LLI8	0.0e+00	62.95	Protein RRP6-like 3 OS=Arabidopsis thaliana OX=3702 GN=RRP6L3 PE=2 SV=1	[more]
A9LLI7	8.5e-51	35.34	Protein RRP6-like 2 OS=Arabidopsis thaliana OX=3702 GN=RRP6L2 PE=2 SV=1	[more]
Q0WVE8	4.2e-50	38.82	Protein RRP6-like 1 OS=Arabidopsis thaliana OX=3702 GN=RRP6L1 PE=2 SV=1	[more]
Q10146	6.8e-48	39.13	Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]
P56960	5.7e-47	38.14	Exosome component 10 OS=Mus musculus OX=10090 GN=Exosc10 PE=1 SV=2	[more]

BLAST of ClCG02G001940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K254	0.0e+00	92.92	HRDC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G043600 PE=4 S...	[more]
A0A1S3C120	0.0e+00	92.58	protein RRP6-like 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495596 PE=4 SV=1	[more]
A0A6J1C5X3	0.0e+00	89.21	protein RRP6-like 3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007668 PE...	[more]
A0A5A7T9W4	0.0e+00	87.77	Protein RRP6-like 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A6J1C2I3	0.0e+00	89.27	protein RRP6-like 3 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007668 PE...	[more]

BLAST of ClCG02G001940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32415.1	0.0e+00	63.02	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	[more]
AT2G32415.2	0.0e+00	62.68	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	[more]
AT5G35910.1	6.1e-52	35.34	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	[more]
AT1G54440.1	3.0e-51	38.82	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	[more]
AT1G54440.2	3.0e-51	38.82	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002562	3'-5' exonuclease domain	SMART	SM00474	35exoneu6	coord: 130..298 e-value: 8.6E-41 score: 151.5
IPR002562	3'-5' exonuclease domain	PFAM	PF01612	DNA_pol_A_exo1	coord: 130..296 e-value: 2.3E-46 score: 157.7
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 42..333 e-value: 5.6E-83 score: 280.6
IPR044876	HRDC domain superfamily	GENE3D	1.10.150.80	HRDC domain	coord: 356..456 e-value: 1.9E-20 score: 74.6
IPR002121	HRDC domain	PFAM	PF00570	HRDC	coord: 368..410 e-value: 3.7E-7 score: 30.0
None	No IPR available	PANTHER	PTHR12124:SF68	PROTEIN RRP6-LIKE 3	coord: 20..903
None	No IPR available	CDD	cd06147	Rrp6p_like_exo	coord: 130..318 e-value: 4.50651E-97 score: 300.669
IPR045092	Exosome complex exonuclease Rrp6-like	PANTHER	PTHR12124	POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED	coord: 20..903
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 65..314
IPR010997	HRDC-like superfamily	SUPERFAMILY	47819	HRDC-like	coord: 361..446

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G001940.1	ClCG02G001940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0071040	nuclear polyadenylation-dependent antisense transcript catabolic process
biological_process	GO:0071039	nuclear polyadenylation-dependent CUT catabolic process
biological_process	GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process
biological_process	GO:0071036	nuclear polyadenylation-dependent snoRNA catabolic process
biological_process	GO:0071037	nuclear polyadenylation-dependent snRNA catabolic process
biological_process	GO:0071038	nuclear polyadenylation-dependent tRNA catabolic process
biological_process	GO:0071051	polyadenylation-dependent snoRNA 3'-end processing
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0071044	histone mRNA catabolic process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0000175	3'-5'-exoribonuclease activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0003676	nucleic acid binding