ClCG02G001370 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG02G001370
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionprotein THYLAKOID FORMATION1, chloroplastic
LocationCG_Chr02: 1523424 .. 1525889 (+)
RNA-Seq ExpressionClCG02G001370
SyntenyClCG02G001370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAAAGATAAAGTGCATCCCATTTTTAACTTTTTGGTCCAAAGGTCATGGTGTCTTTAACTAATTACTCTAATATTTAGGTTAAAATACTATTTTGGTGTATGTAATTTATGAGTTTCCTTCCCTTTTATATAATCCATATAGGTTTAATTATCAAATCTGAGTGAAGTACTTTCCATAATTGTTAAATTTAGTCATTCAAGCAATATTCGTCAAAATTGTTTAAATATTTATAGTAATTTTAATGCAAAAAGTTAAATTTTTGCTAACTTTTGAAATTATAAAAACTAAAAACGGAAACTATGCCCTACATTCAATATAGTTTATAATATAAGGAGAACACGAACAATAATTCTATATTTTGATAATAATATTATAGATAATGTTTGTGTTAGATAACACTTTTAGGAATAATAATCAAGTATATAGCAACATTTTTAAAAATGTATAAATATAGCAAAATCTATAAGTGATAAACTCTATCACTGATAGACTCTTACTATTGATTTGGTCTATCTTGATAGACTTCAAAAGTATGATTTAAATTTTGCTATATCTATAAATTTTTTTGCATTGTGTTGTATTTGCAAACANTTATCTTTTTACCCGTTAGAGAAATTGAATCTTCATGATATATTGCCTAACCTTATTCTGTTCGAGACTTGAGAGAATTAGGTTCAAAGGCTTCTTTCCTGCATAAGGCTGCATCTTATTTTCTAGCTAACTATTTTTTTTTGGAACATTTGCCCCTCCCCTTCCACCCTTGCCCCTGACCCAACACACACACACAGACTTACAGAGCTTTTGTGCGATTTCCCTTCGCCCTTGTGAAGACTGACTCTATTTACTGTGTCTATCACTGAAGATATAATACTTTTGATCTTTTAAAACAGCTAAAGCTATATAGTCGAACAGTTTCTAAATCAGCTGAAGTCATGGATGGAGATTTGACCCCTCAGTATTGGCATCTAACTTATTGCTACTTCTGAACAGCTCTGTGCTGCTTTAAACATTGACAAAAAAGGTGTAGACCGAGACCTTGATGTATACCGCAACCTGCTTTCAAAGTTGGTTCAAGCGAAGGAGCTCCTAAAGGAATACGTCGATAGGTAAGAGACTGTTAAGTTCATGGTTCTAGGCATGATAAAGTAGGTCTAACTACTCTTCCAAACCATCATTTTTTCACAGATGTTATGCATCTATTTGAAAACTGTCAATCTTGCATGTGTCAAATTGTCTGCAAGTCACTGTCATAGCATTTATATTCATTGGATATCCACCACATGTTCCTCATCCTTGATTGTGATTCTACATTTTAAGGACAAAAGTTTGTATGATTAACCAGTGGTTTTCAATTGTATAGAGAGAAGAAGAAAAGAGATGAGAGGAGTGGATCACAGACAGCTAATGAGGCCATAACTAAATGCTTGGGAGAATACAGCATGCAGACTGGTTTGTAAAGAAAAGATGATTGGAGCACTTCCTAATTTGAGATAGACTTGAGAGTTTATAGCAATATTCTAAATTACCCTATAGATATGCATCTGTAATGAATTGTTGGGTCTCATGCATTTGGTAAATTTTGTATTCAGCCAGGCACTACCTTTATTTCTCATTTGATATAACCACCACTCAAGCTATTTTTTAATCATTTGTATTACATATTTTAGAGCGCAATTGTTAATACAAATGCTATCGCACTCTGTGCAGTAATCACTCTCCAAGTGATATTTGACCATCTGGCTTTTGTATTGTGCAATCATTTCTGGATTATTATGATCTTTCACCCTTTGCTTTTGTAGGGTCTAAATTCATTCAGTTACAAACATTTAGGATTGTTTTTAAATACAAATTGGCTAGGGGATTTGAACTACGAACCTCTTGATTGCACCTATGTTAGTTGAGTTGAGCTTNGGTCTAAATTCATTCAGTTACAAACATTTAGGATTGTTTTTAAATACAAATTGGCTAGGGGATTTGAACTACGAACCTCTTGGTTGCACCTATGTTAGTTGAGTTGAGCTTTTTTTGGCACATTTAGGATTTTTATTGATGTTTTAAGTGATACGACCTCCAAAGTTTAGATGTATACATTTAATTTTTTTCCCCTTTTTAACCCATTGTTGAAGACATGAGCTTTCTTGAACACATGATTTGTTTTATGGGTGTTATTTAGATTGTGTAGAGTTGTGAAGCTCAATGACAAAATTTAATTAAATTAGTTAACTAATAACTTGTTATTGTCTTGAAAATGAGGAAAAATAGTTTATAACTGATAAAATATGAGCAAATTATTTATTTACAGCCGGGGTAAATATGAAACTAATATATGTTCATATCAATTTGGTTAACTGAGACTCCATATTTGAGAGGAAAGCCCAATATGATAAGGCTGCGACTGAGGCCCAATATGATGAGGCTATGGGTGAAGATCCAATTGGGCCTATTATGATAGGGCTATAG

mRNA sequence

ATGGGCAAAGATAAAGTGCATCCCATTTTTAACTTTTTGGTCCAAAGAGCTTTTGTGCGATTTCCCTTCGCCCTTGTGAAGACTGACTCTATTTACTGTCTCTGTGCTGCTTTAAACATTGACAAAAAAGGTGTAGACCGAGACCTTGATGTATACCGCAACCTGCTTTCAAAGTTGGTTCAAGCGAAGGAGCTCCTAAAGGAATACGTCGATAGAGAGAAGAAGAAAAGAGATGAGAGGAGTGGATCACAGACAGCTAATGAGGCCATAACTAAATGCTTGGGAGAATACAGCATGCAGACTGGTTTGAAAGCCCAATATGATAAGGCTGCGACTGAGGCCCAATATGATGAGGCTATGGGTGAAGATCCAATTGGGCCTATTATGATAGGGCTATAG

Coding sequence (CDS)

ATGGGCAAAGATAAAGTGCATCCCATTTTTAACTTTTTGGTCCAAAGAGCTTTTGTGCGATTTCCCTTCGCCCTTGTGAAGACTGACTCTATTTACTGTCTCTGTGCTGCTTTAAACATTGACAAAAAAGGTGTAGACCGAGACCTTGATGTATACCGCAACCTGCTTTCAAAGTTGGTTCAAGCGAAGGAGCTCCTAAAGGAATACGTCGATAGAGAGAAGAAGAAAAGAGATGAGAGGAGTGGATCACAGACAGCTAATGAGGCCATAACTAAATGCTTGGGAGAATACAGCATGCAGACTGGTTTGAAAGCCCAATATGATAAGGCTGCGACTGAGGCCCAATATGATGAGGCTATGGGTGAAGATCCAATTGGGCCTATTATGATAGGGCTATAG

Protein sequence

MGKDKVHPIFNFLVQRAFVRFPFALVKTDSIYCLCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGEYSMQTGLKAQYDKAATEAQYDEAMGEDPIGPIMIGL
Homology
BLAST of ClCG02G001370 vs. NCBI nr
Match: XP_004136805.1 (protein THYLAKOID FORMATION1, chloroplastic [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 3.2e-28
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 34  LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKC 93
           LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDER+GSQTANEAITKC
Sbjct: 229 LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKC 288

Query: 94  LGEYSMQTGL 104
           LGEYSMQTGL
Sbjct: 289 LGEYSMQTGL 298

BLAST of ClCG02G001370 vs. NCBI nr
Match: XP_008455361.1 (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis melo] >KAA0031606.1 protein THYLAKOID FORMATION1 [Cucumis melo var. makuwa] >TYK07058.1 protein THYLAKOID FORMATION1 [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 4.1e-28
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 34  LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKC 93
           LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEY+DREKKKRDER+GSQTANEAITKC
Sbjct: 229 LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYIDREKKKRDERAGSQTANEAITKC 288

Query: 94  LGEYSMQTGL 104
           LGEYSMQTGL
Sbjct: 289 LGEYSMQTGL 298

BLAST of ClCG02G001370 vs. NCBI nr
Match: XP_038888611.1 (protein THYLAKOID FORMATION1, chloroplastic [Benincasa hispida])

HSP 1 Score: 134.4 bits (337), Expect = 7.0e-28
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 34  LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKC 93
           LCA+LNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDER+GSQTANEAITKC
Sbjct: 229 LCASLNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKC 288

Query: 94  LGEYSMQTGL 104
           LGEYSMQTGL
Sbjct: 289 LGEYSMQTGL 298

BLAST of ClCG02G001370 vs. NCBI nr
Match: KAE8645760.1 (hypothetical protein Csa_020345 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 9.2e-28
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0

Query: 34  LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKC 93
           LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDER+GSQTANEAITKC
Sbjct: 229 LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKC 288

Query: 94  LGEYSMQTG 103
           LGEYSMQTG
Sbjct: 289 LGEYSMQTG 297

BLAST of ClCG02G001370 vs. NCBI nr
Match: XP_022969189.1 (protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 133.3 bits (334), Expect = 1.6e-27
Identity = 67/70 (95.71%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 34  LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKC 93
           LCAALN+DKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDER+GSQTA+EAITKC
Sbjct: 229 LCAALNVDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKC 288

Query: 94  LGEYSMQTGL 104
           LGEYSMQTGL
Sbjct: 289 LGEYSMQTGL 298

BLAST of ClCG02G001370 vs. ExPASy Swiss-Prot
Match: Q7XAB8 (Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum OX=4113 GN=THF1 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.6e-21
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 0

Query: 34  LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKC 93
           LCAALN++KK VDRDLDVYRNLLSKLVQAKELLKEYV+REKKKR ER  +Q ANE +TKC
Sbjct: 226 LCAALNVNKKSVDRDLDVYRNLLSKLVQAKELLKEYVEREKKKRGERE-TQKANETVTKC 285

Query: 94  LGEY 98
           LG+Y
Sbjct: 286 LGDY 288

BLAST of ClCG02G001370 vs. ExPASy Swiss-Prot
Match: Q9SKT0 (Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THF1 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-20
Identity = 51/63 (80.95%), Postives = 58/63 (92.06%), Query Frame = 0

Query: 34  LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKC 93
           LCA+LNI+KK VDRDLDVYRNLLSKLVQAKELLKEYV+REKKK+ ER+ SQ ANE I+KC
Sbjct: 225 LCASLNINKKSVDRDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKC 284

Query: 94  LGE 97
           LG+
Sbjct: 285 LGD 287

BLAST of ClCG02G001370 vs. ExPASy Swiss-Prot
Match: Q84PB7 (Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=THF1 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-18
Identity = 47/59 (79.66%), Postives = 55/59 (93.22%), Query Frame = 0

Query: 34  LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITK 93
           LCAALNI+K+ VDRDLDVYRN+LSKLVQAKELLKEYV+REKKKR+ERS +  +NEA+TK
Sbjct: 219 LCAALNINKRSVDRDLDVYRNILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTK 277

BLAST of ClCG02G001370 vs. ExPASy TrEMBL
Match: A0A0A0K3P0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046130 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.5e-28
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 34  LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKC 93
           LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDER+GSQTANEAITKC
Sbjct: 229 LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKC 288

Query: 94  LGEYSMQTGL 104
           LGEYSMQTGL
Sbjct: 289 LGEYSMQTGL 298

BLAST of ClCG02G001370 vs. ExPASy TrEMBL
Match: A0A5D3C7D3 (Protein THYLAKOID FORMATION1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003760 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.0e-28
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 34  LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKC 93
           LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEY+DREKKKRDER+GSQTANEAITKC
Sbjct: 229 LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYIDREKKKRDERAGSQTANEAITKC 288

Query: 94  LGEYSMQTGL 104
           LGEYSMQTGL
Sbjct: 289 LGEYSMQTGL 298

BLAST of ClCG02G001370 vs. ExPASy TrEMBL
Match: A0A1S3C0V5 (protein THYLAKOID FORMATION1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495547 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.0e-28
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 34  LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKC 93
           LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEY+DREKKKRDER+GSQTANEAITKC
Sbjct: 229 LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYIDREKKKRDERAGSQTANEAITKC 288

Query: 94  LGEYSMQTGL 104
           LGEYSMQTGL
Sbjct: 289 LGEYSMQTGL 298

BLAST of ClCG02G001370 vs. ExPASy TrEMBL
Match: A0A6J1HVN0 (protein THYLAKOID FORMATION1, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468259 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 7.6e-28
Identity = 67/70 (95.71%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 34  LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKC 93
           LCAALN+DKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDER+GSQTA+EAITKC
Sbjct: 231 LCAALNVDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKC 290

Query: 94  LGEYSMQTGL 104
           LGEYSMQTGL
Sbjct: 291 LGEYSMQTGL 300

BLAST of ClCG02G001370 vs. ExPASy TrEMBL
Match: A0A6J1I1V8 (protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468259 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 7.6e-28
Identity = 67/70 (95.71%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 34  LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKC 93
           LCAALN+DKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDER+GSQTA+EAITKC
Sbjct: 229 LCAALNVDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKC 288

Query: 94  LGEYSMQTGL 104
           LGEYSMQTGL
Sbjct: 289 LGEYSMQTGL 298

BLAST of ClCG02G001370 vs. TAIR 10
Match: AT2G20890.1 (photosystem II reaction center PSB29 protein )

HSP 1 Score: 100.9 bits (250), Expect = 8.0e-22
Identity = 51/63 (80.95%), Postives = 58/63 (92.06%), Query Frame = 0

Query: 34  LCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKC 93
           LCA+LNI+KK VDRDLDVYRNLLSKLVQAKELLKEYV+REKKK+ ER+ SQ ANE I+KC
Sbjct: 225 LCASLNINKKSVDRDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKC 284

Query: 94  LGE 97
           LG+
Sbjct: 285 LGD 287

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004136805.13.2e-2898.57protein THYLAKOID FORMATION1, chloroplastic [Cucumis sativus][more]
XP_008455361.14.1e-2897.14PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis melo] >KAA003160... [more]
XP_038888611.17.0e-2897.14protein THYLAKOID FORMATION1, chloroplastic [Benincasa hispida][more]
KAE8645760.19.2e-2898.55hypothetical protein Csa_020345 [Cucumis sativus][more]
XP_022969189.11.6e-2795.71protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q7XAB86.6e-2181.25Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum OX=4113 GN=THF1... [more]
Q9SKT01.1e-2080.95Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=... [more]
Q84PB71.4e-1879.66Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica OX=3... [more]
Match NameE-valueIdentityDescription
A0A0A0K3P01.5e-2898.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046130 PE=3 SV=1[more]
A0A5D3C7D32.0e-2897.14Protein THYLAKOID FORMATION1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A1S3C0V52.0e-2897.14protein THYLAKOID FORMATION1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495... [more]
A0A6J1HVN07.6e-2895.71protein THYLAKOID FORMATION1, chloroplastic-like isoform X1 OS=Cucurbita maxima ... [more]
A0A6J1I1V87.6e-2895.71protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 OS=Cucurbita maxima ... [more]
Match NameE-valueIdentityDescription
AT2G20890.18.0e-2280.95photosystem II reaction center PSB29 protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 52..79
NoneNo IPR availablePANTHERPTHR34793:SF7PHOTOSYSTEM II BIOGENESIS PROTEINcoord: 34..91
IPR017499Protein Thf1PFAMPF11264ThylakoidFormatcoord: 29..80
e-value: 1.4E-11
score: 44.5
IPR017499Protein Thf1PANTHERPTHR34793PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTICcoord: 34..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G001370.1ClCG02G001370.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010207 photosystem II assembly
biological_process GO:0045037 protein import into chloroplast stroma
biological_process GO:0045038 protein import into chloroplast thylakoid membrane
biological_process GO:0050794 regulation of cellular process
biological_process GO:0050896 response to stimulus
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0015979 photosynthesis
cellular_component GO:0042170 plastid membrane