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ClCG02G001370 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCAAAGATAAAGTGCATCCCATTTTTAACTTTTTGGTCCAAAGGTCATGGTGTCTTTAACTAATTACTCTAATATTTAGGTTAAAATACTATTTTGGTGTATGTAATTTATGAGTTTCCTTCCCTTTTATATAATCCATATAGGTTTAATTATCAAATCTGAGTGAAGTACTTTCCATAATTGTTAAATTTAGTCATTCAAGCAATATTCGTCAAAATTGTTTAAATATTTATAGTAATTTTAATGCAAAAAGTTAAATTTTTGCTAACTTTTGAAATTATAAAAACTAAAAACGGAAACTATGCCCTACATTCAATATAGTTTATAATATAAGGAGAACACGAACAATAATTCTATATTTTGATAATAATATTATAGATAATGTTTGTGTTAGATAACACTTTTAGGAATAATAATCAAGTATATAGCAACATTTTTAAAAATGTATAAATATAGCAAAATCTATAAGTGATAAACTCTATCACTGATAGACTCTTACTATTGATTTGGTCTATCTTGATAGACTTCAAAAGTATGATTTAAATTTTGCTATATCTATAAATTTTTTTGCATTGTGTTGTATTTGCAAACANTTATCTTTTTACCCGTTAGAGAAATTGAATCTTCATGATATATTGCCTAACCTTATTCTGTTCGAGACTTGAGAGAATTAGGTTCAAAGGCTTCTTTCCTGCATAAGGCTGCATCTTATTTTCTAGCTAACTATTTTTTTTTGGAACATTTGCCCCTCCCCTTCCACCCTTGCCCCTGACCCAACACACACACACAGACTTACAGAGCTTTTGTGCGATTTCCCTTCGCCCTTGTGAAGACTGACTCTATTTACTGTGTCTATCACTGAAGATATAATACTTTTGATCTTTTAAAACAGCTAAAGCTATATAGTCGAACAGTTTCTAAATCAGCTGAAGTCATGGATGGAGATTTGACCCCTCAGTATTGGCATCTAACTTATTGCTACTTCTGAACAGCTCTGTGCTGCTTTAAACATTGACAAAAAAGGTGTAGACCGAGACCTTGATGTATACCGCAACCTGCTTTCAAAGTTGGTTCAAGCGAAGGAGCTCCTAAAGGAATACGTCGATAGGTAAGAGACTGTTAAGTTCATGGTTCTAGGCATGATAAAGTAGGTCTAACTACTCTTCCAAACCATCATTTTTTCACAGATGTTATGCATCTATTTGAAAACTGTCAATCTTGCATGTGTCAAATTGTCTGCAAGTCACTGTCATAGCATTTATATTCATTGGATATCCACCACATGTTCCTCATCCTTGATTGTGATTCTACATTTTAAGGACAAAAGTTTGTATGATTAACCAGTGGTTTTCAATTGTATAGAGAGAAGAAGAAAAGAGATGAGAGGAGTGGATCACAGACAGCTAATGAGGCCATAACTAAATGCTTGGGAGAATACAGCATGCAGACTGGTTTGTAAAGAAAAGATGATTGGAGCACTTCCTAATTTGAGATAGACTTGAGAGTTTATAGCAATATTCTAAATTACCCTATAGATATGCATCTGTAATGAATTGTTGGGTCTCATGCATTTGGTAAATTTTGTATTCAGCCAGGCACTACCTTTATTTCTCATTTGATATAACCACCACTCAAGCTATTTTTTAATCATTTGTATTACATATTTTAGAGCGCAATTGTTAATACAAATGCTATCGCACTCTGTGCAGTAATCACTCTCCAAGTGATATTTGACCATCTGGCTTTTGTATTGTGCAATCATTTCTGGATTATTATGATCTTTCACCCTTTGCTTTTGTAGGGTCTAAATTCATTCAGTTACAAACATTTAGGATTGTTTTTAAATACAAATTGGCTAGGGGATTTGAACTACGAACCTCTTGATTGCACCTATGTTAGTTGAGTTGAGCTTNGGTCTAAATTCATTCAGTTACAAACATTTAGGATTGTTTTTAAATACAAATTGGCTAGGGGATTTGAACTACGAACCTCTTGGTTGCACCTATGTTAGTTGAGTTGAGCTTTTTTTGGCACATTTAGGATTTTTATTGATGTTTTAAGTGATACGACCTCCAAAGTTTAGATGTATACATTTAATTTTTTTCCCCTTTTTAACCCATTGTTGAAGACATGAGCTTTCTTGAACACATGATTTGTTTTATGGGTGTTATTTAGATTGTGTAGAGTTGTGAAGCTCAATGACAAAATTTAATTAAATTAGTTAACTAATAACTTGTTATTGTCTTGAAAATGAGGAAAAATAGTTTATAACTGATAAAATATGAGCAAATTATTTATTTACAGCCGGGGTAAATATGAAACTAATATATGTTCATATCAATTTGGTTAACTGAGACTCCATATTTGAGAGGAAAGCCCAATATGATAAGGCTGCGACTGAGGCCCAATATGATGAGGCTATGGGTGAAGATCCAATTGGGCCTATTATGATAGGGCTATAG ATGGGCAAAGATAAAGTGCATCCCATTTTTAACTTTTTGGTCCAAAGAGCTTTTGTGCGATTTCCCTTCGCCCTTGTGAAGACTGACTCTATTTACTGTCTCTGTGCTGCTTTAAACATTGACAAAAAAGGTGTAGACCGAGACCTTGATGTATACCGCAACCTGCTTTCAAAGTTGGTTCAAGCGAAGGAGCTCCTAAAGGAATACGTCGATAGAGAGAAGAAGAAAAGAGATGAGAGGAGTGGATCACAGACAGCTAATGAGGCCATAACTAAATGCTTGGGAGAATACAGCATGCAGACTGGTTTGAAAGCCCAATATGATAAGGCTGCGACTGAGGCCCAATATGATGAGGCTATGGGTGAAGATCCAATTGGGCCTATTATGATAGGGCTATAG ATGGGCAAAGATAAAGTGCATCCCATTTTTAACTTTTTGGTCCAAAGAGCTTTTGTGCGATTTCCCTTCGCCCTTGTGAAGACTGACTCTATTTACTGTCTCTGTGCTGCTTTAAACATTGACAAAAAAGGTGTAGACCGAGACCTTGATGTATACCGCAACCTGCTTTCAAAGTTGGTTCAAGCGAAGGAGCTCCTAAAGGAATACGTCGATAGAGAGAAGAAGAAAAGAGATGAGAGGAGTGGATCACAGACAGCTAATGAGGCCATAACTAAATGCTTGGGAGAATACAGCATGCAGACTGGTTTGAAAGCCCAATATGATAAGGCTGCGACTGAGGCCCAATATGATGAGGCTATGGGTGAAGATCCAATTGGGCCTATTATGATAGGGCTATAG MGKDKVHPIFNFLVQRAFVRFPFALVKTDSIYCLCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGEYSMQTGLKAQYDKAATEAQYDEAMGEDPIGPIMIGL Homology
BLAST of ClCG02G001370 vs. NCBI nr
Match: XP_004136805.1 (protein THYLAKOID FORMATION1, chloroplastic [Cucumis sativus]) HSP 1 Score: 135.6 bits (340), Expect = 3.2e-28 Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of ClCG02G001370 vs. NCBI nr
Match: XP_008455361.1 (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis melo] >KAA0031606.1 protein THYLAKOID FORMATION1 [Cucumis melo var. makuwa] >TYK07058.1 protein THYLAKOID FORMATION1 [Cucumis melo var. makuwa]) HSP 1 Score: 135.2 bits (339), Expect = 4.1e-28 Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of ClCG02G001370 vs. NCBI nr
Match: XP_038888611.1 (protein THYLAKOID FORMATION1, chloroplastic [Benincasa hispida]) HSP 1 Score: 134.4 bits (337), Expect = 7.0e-28 Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of ClCG02G001370 vs. NCBI nr
Match: KAE8645760.1 (hypothetical protein Csa_020345 [Cucumis sativus]) HSP 1 Score: 134.0 bits (336), Expect = 9.2e-28 Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0
BLAST of ClCG02G001370 vs. NCBI nr
Match: XP_022969189.1 (protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 133.3 bits (334), Expect = 1.6e-27 Identity = 67/70 (95.71%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of ClCG02G001370 vs. ExPASy Swiss-Prot
Match: Q7XAB8 (Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum OX=4113 GN=THF1 PE=2 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 6.6e-21 Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 0
BLAST of ClCG02G001370 vs. ExPASy Swiss-Prot
Match: Q9SKT0 (Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THF1 PE=1 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 1.1e-20 Identity = 51/63 (80.95%), Postives = 58/63 (92.06%), Query Frame = 0
BLAST of ClCG02G001370 vs. ExPASy Swiss-Prot
Match: Q84PB7 (Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=THF1 PE=2 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 1.4e-18 Identity = 47/59 (79.66%), Postives = 55/59 (93.22%), Query Frame = 0
BLAST of ClCG02G001370 vs. ExPASy TrEMBL
Match: A0A0A0K3P0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046130 PE=3 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 1.5e-28 Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of ClCG02G001370 vs. ExPASy TrEMBL
Match: A0A5D3C7D3 (Protein THYLAKOID FORMATION1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003760 PE=3 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 2.0e-28 Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of ClCG02G001370 vs. ExPASy TrEMBL
Match: A0A1S3C0V5 (protein THYLAKOID FORMATION1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495547 PE=3 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 2.0e-28 Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of ClCG02G001370 vs. ExPASy TrEMBL
Match: A0A6J1HVN0 (protein THYLAKOID FORMATION1, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468259 PE=3 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 7.6e-28 Identity = 67/70 (95.71%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of ClCG02G001370 vs. ExPASy TrEMBL
Match: A0A6J1I1V8 (protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468259 PE=3 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 7.6e-28 Identity = 67/70 (95.71%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of ClCG02G001370 vs. TAIR 10
Match: AT2G20890.1 (photosystem II reaction center PSB29 protein ) HSP 1 Score: 100.9 bits (250), Expect = 8.0e-22 Identity = 51/63 (80.95%), Postives = 58/63 (92.06%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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