ClCG02G001020 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGGAAGTTAACGATGATGATTCCGATCTCTTGTTCTTGTTGCCTTTTCTTGAGTAGGAACATTAAGAAAAGCTTAGAGAATGTTCGGAATTGAGTTCATTAACAGCCCAAACTTAGATTCCACAGTTCACTCCTCTTGTTTTATTCACACGTTGAAAATTCTGTAAATATTTTATCATTTTGATGCACTTTCTCGGCAACCAAACTGAAGTTACAGAGTGTTTTTTTTTTTGCTTTTGTACTGTATGAAAACATCGGTTTGCGTAGAACGATTGAAACTTTCCGAGGTTTATTATGTGTTCTCTGTTTTAGCTTCGAAAATTTGAAATTCGACCTTCAATGTTATCTTTTCCCGAATTCTTTGTTGAAGTTCTGCGGTTCCTTCCTTCTGTTGCTTCCGGTCTCTCTTCTTTCAAGTTTCAATTAGTTTCCTCTTCTTCGAAATCAGTTCCTTTCATGTTTCAAATCTTTCGTTATAAATTTTCCCCTTCCATTTCTCGATTATCTGTTGATTTGTTTCTGATGTTACTCCGCTGTCTACATCGAAATTGACGAATTCTAGAGTCCAATCTAGGACTTGAATTGTTAGATATCAGATAAAATCTCAGTATATTTAATGGATGTTGAGGAATTTTGAAGCCTAATGCCGGTAAAATCTTTGTAGCAGATAAGATGGAAAATTGGGGGAATTTTTAAGCAATGCTTCTGTTCTTTCAGATAATTAGGTTATTTCATTCCTACTCACTTTCTCCAGCTAGTTCATCTCAATCGTCAAATCAAACTCCTAGTCCTACTAACAAGTTGGTTCATTATTGATAATGGGCCTGTACCTAAACGCGTAAACATATTAGAAATTACTTGCCTCCATACTTAGCTATTGAGTCAGAATCCATTCTTCAAATTTTAGTTTTATTAAATTGAACCATGAAACCGAGTAAACTAGTAGTATGAATATTTTCCGAGGGAAATCTGTGGTGTATTATTGGACAAGGATGTCTGCTTTTGCTGGTGTATTGAGTAGTTTAGATTTGAATTTGACATTGTGTTTGTAGCCAATTATGATAGTATTGTAATGGGCGCATCTTGAGAGCATAATCTTTTTGCAGTTTACCCAGCCACATCGCAGGAGAAACTTGAAAGATTTTGTTAAAAAAAGAAAAAAGAGTTTGTTATATTTTCAACTATGATTAAACATATAAGAGGTTACGTATGATTAAATATATAGTAAGTTACGGAAAGATGAGTGTAATCCAAGATGTATTCAAATATTTTTGTTTATCTTTATGATTTGATTTTGAATATTGTATTAGAAATAATTTGGAGTAGTAGTTTAAATTATGAAATAGAGAATGGAACTTTTGATGCAGAAAGTGGCTCCATGGATGAGTGTTCCACAATTTGGGGATTGGGAGCAGAAGGGAGAGGTGCCTGATTATTCAGTTGATTTCTCAAAAATAAGGGAAAATAGGAAACAACACAAAAGAGATTTGTCAAGGGCAAGCATTGGGAATGAAGAGGAGCTAATGGCCTCATCAGCCACTCCCACTACAAACACACCTCATTCTCATGCTGATGAAAATCATCAACTGAATCCCACCAACAGCAACTCCCCAACGGTCAGATTCCTTTCCCTCATTACCTTTCTTTTTTCCTTTTTAATTTTCCAGCTTTTACTTTAAGCATCTCTCCTTTTTCCTCGCGTGTGGGCATGCATGTGATAAAACTGACCCTGCCTCTCAATAATTTATTCAATATGCTATTGTGGGAAAAAATAACATAAAGATCTATCCGTAATGCCACTGGATCTAAAAGTTTTATTCAAGTTAAAATCCTTCTACTTTATACTTTTGAGTTTTGACTAGGAAAGAGAAAACAAAAGAAACGAACAAAGAAAAGAATGAAAAAAAAAAAAAAAAAACTTAGACATTCAAGTCAATATTGAGTTTGTGGGTAACATGACAATAGATAATAATACTATAGTGTTTTCAAAATACTTTGACGAATGACCTACGTCATTTATATATATAGATCTTTAGTCTTACGTAACTAATGCCTTCTTTGTTGTCGAGTTATTACTTGGATGTTTGCACTACCATGGGTCCTACCGAAGTCCTTCATGGGTTGTAGAGTCTTTCATAGGTCCTAAAGAGGTCTTTCATAGATCTTCCAAGGTTCTTAAGGGGATTGTACAGTCTTCCATGATTTTGGTCAATTCTCTTGGATCGGCCTCCTAATGCCGTGACTGACTATGGGTAGGACATAGGTCTTATCAACTTTGGATTAGCCATTTCAGATCTCTATCTCTATTTTTCGATCTCCTATCTTTTCAATTCTTGGTCTTGTCTCATCTCTGCACATCAACCCCCCATAACATATCTCACATTACCGGAGAATTGAAACCTATGACCAATGAAACAAGTCCGAATATCTAACCGGTTAACAATCTAACTTATGTTTCATTTGTTTTATCTTCAGCATGGCCAGACTTAAATGATACATTCCCGACTTCCTAAATTTAGATGAACATTTCCCAAACATATTTTAATCTATTTTATCTTAATGGCTCAAGAGGAATTGACTGTTCAGGATATGAAGAATATTGGGTAG ATGGTGGAAGTTAACGATGATGATTCCGATCTCTTGTTCTTGTTGCCTTTTCTTGACTTCGAAAATTTGAAATTCGACCTTCAATGTTATCTTTTCCCGAATTCTTTGTTGAAGTTCTGCGGTTCCTTCCTTCTGTTGCTTCCGAAAGTGGCTCCATGGATGAGTGTTCCACAATTTGGGGATTGGGAGCAGAAGGGAGAGGTGCCTGATTATTCAGTTGATTTCTCAAAAATAAGGGAAAATAGGAAACAACACAAAAGAGATTTGTCAAGGGCAAGCATTGGGAATGAAGAGGAGCTAATGGCCTCATCAGCCACTCCCACTACAAACACACCTCATTCTCATGCTGATGAAAATCATCAACTGAATCCCACCAACAGCAACTCCCCAACGGATATGAAGAATATTGGGTAG ATGGTGGAAGTTAACGATGATGATTCCGATCTCTTGTTCTTGTTGCCTTTTCTTGACTTCGAAAATTTGAAATTCGACCTTCAATGTTATCTTTTCCCGAATTCTTTGTTGAAGTTCTGCGGTTCCTTCCTTCTGTTGCTTCCGAAAGTGGCTCCATGGATGAGTGTTCCACAATTTGGGGATTGGGAGCAGAAGGGAGAGGTGCCTGATTATTCAGTTGATTTCTCAAAAATAAGGGAAAATAGGAAACAACACAAAAGAGATTTGTCAAGGGCAAGCATTGGGAATGAAGAGGAGCTAATGGCCTCATCAGCCACTCCCACTACAAACACACCTCATTCTCATGCTGATGAAAATCATCAACTGAATCCCACCAACAGCAACTCCCCAACGGATATGAAGAATATTGGGTAG MVEVNDDDSDLLFLLPFLDFENLKFDLQCYLFPNSLLKFCGSFLLLLPKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMASSATPTTNTPHSHADENHQLNPTNSNSPTDMKNIG Homology
BLAST of ClCG02G001020 vs. NCBI nr
Match: XP_038900911.1 (uncharacterized protein LOC120087959 [Benincasa hispida]) HSP 1 Score: 171.0 bits (432), Expect = 7.0e-39 Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0
BLAST of ClCG02G001020 vs. NCBI nr
Match: XP_004148448.1 (uncharacterized protein LOC101211284 [Cucumis sativus] >KGN62090.1 hypothetical protein Csa_006726 [Cucumis sativus]) HSP 1 Score: 168.3 bits (425), Expect = 4.6e-38 Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0
BLAST of ClCG02G001020 vs. NCBI nr
Match: XP_008457901.1 (PREDICTED: uncharacterized protein LOC103497474 [Cucumis melo]) HSP 1 Score: 162.2 bits (409), Expect = 3.3e-36 Identity = 81/88 (92.05%), Postives = 82/88 (93.18%), Query Frame = 0
BLAST of ClCG02G001020 vs. NCBI nr
Match: XP_023006844.1 (uncharacterized protein LOC111499515 [Cucurbita maxima]) HSP 1 Score: 143.7 bits (361), Expect = 1.2e-30 Identity = 75/93 (80.65%), Postives = 80/93 (86.02%), Query Frame = 0
BLAST of ClCG02G001020 vs. NCBI nr
Match: XP_023533301.1 (uncharacterized protein LOC111795235 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 141.4 bits (355), Expect = 6.0e-30 Identity = 74/93 (79.57%), Postives = 79/93 (84.95%), Query Frame = 0
BLAST of ClCG02G001020 vs. ExPASy TrEMBL
Match: A0A0A0LJN9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297140 PE=4 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 2.2e-38 Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0
BLAST of ClCG02G001020 vs. ExPASy TrEMBL
Match: A0A1S3C6Q7 (uncharacterized protein LOC103497474 OS=Cucumis melo OX=3656 GN=LOC103497474 PE=4 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 1.6e-36 Identity = 81/88 (92.05%), Postives = 82/88 (93.18%), Query Frame = 0
BLAST of ClCG02G001020 vs. ExPASy TrEMBL
Match: A0A6J1L3A7 (uncharacterized protein LOC111499515 OS=Cucurbita maxima OX=3661 GN=LOC111499515 PE=4 SV=1) HSP 1 Score: 143.7 bits (361), Expect = 5.8e-31 Identity = 75/93 (80.65%), Postives = 80/93 (86.02%), Query Frame = 0
BLAST of ClCG02G001020 vs. ExPASy TrEMBL
Match: A0A6J1G5D0 (uncharacterized protein LOC111451041 OS=Cucurbita moschata OX=3662 GN=LOC111451041 PE=4 SV=1) HSP 1 Score: 141.0 bits (354), Expect = 3.8e-30 Identity = 74/94 (78.72%), Postives = 79/94 (84.04%), Query Frame = 0
BLAST of ClCG02G001020 vs. ExPASy TrEMBL
Match: A0A6J1DU25 (uncharacterized protein LOC111024373 OS=Momordica charantia OX=3673 GN=LOC111024373 PE=4 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 8.2e-25 Identity = 68/89 (76.40%), Postives = 73/89 (82.02%), Query Frame = 0
BLAST of ClCG02G001020 vs. TAIR 10
Match: AT5G09960.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 85.9 bits (211), Expect = 2.8e-17 Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = 0
BLAST of ClCG02G001020 vs. TAIR 10
Match: AT5G64850.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 80.1 bits (196), Expect = 1.5e-15 Identity = 47/97 (48.45%), Postives = 63/97 (64.95%), Query Frame = 0
BLAST of ClCG02G001020 vs. TAIR 10
Match: AT5G19473.1 (RPM1-interacting protein 4 (RIN4) family protein ) HSP 1 Score: 59.7 bits (143), Expect = 2.1e-09 Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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