ClCG02G000350 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G000350
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr02: 433735 .. 434187 (+)
RNA-Seq Expression	ClCG02G000350
Synteny	ClCG02G000350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTGGTGAATCCCTCAGCTGGACGTGCATTCATATGGATCGTCACTTGCTTTCTCTTCTTTTCCATTGTCAGCGGCGGTGGTTGTCTTTTGATGTACATGATCCTCCCTGAGACCGAAACTACCGCTTGGCTACCCGTCGCCGGTTTGTCCTTGGTCTGCCTCCCTTGGTTCTTCTGGCTCTTAACTTTCTTCTATAGAGTCATCTCACGTGCATGTGGTTTTAGAGTCTCCCTTGGTATTGGTGTGGAGGTAGGTGCAAATAACGCAAATGCCAATAATAATAATAATAACAATAATGCATCTGCTGAATCCCCTCAATGCGATGTGGGAGATCGAGCTAATGAGGAGGACGACAATGGTGATCAAAGGCGAAGCAATTCGTCATCCAACAACTCAGTAGCATCTCGTGAGAGTGAAATGCCATTAGCCATAACAATGGGGTCGTAA

mRNA sequence

ATGTCTTTGGTGAATCCCTCAGCTGGACGTGCATTCATATGGATCGTCACTTGCTTTCTCTTCTTTTCCATTGTCAGCGGCGGTGGTTGTCTTTTGATGTACATGATCCTCCCTGAGACCGAAACTACCGCTTGGCTACCCGTCGCCGGTTTGTCCTTGGTCTGCCTCCCTTGGTTCTTCTGGCTCTTAACTTTCTTCTATAGAGTCATCTCACGTGCATGTGGTTTTAGAGTCTCCCTTGGTATTGGTGTGGAGGTAGGTGCAAATAACGCAAATGCCAATAATAATAATAATAACAATAATGCATCTGCTGAATCCCCTCAATGCGATGTGGGAGATCGAGCTAATGAGGAGGACGACAATGGTGATCAAAGGCGAAGCAATTCGTCATCCAACAACTCAGTAGCATCTCGTGAGAGTGAAATGCCATTAGCCATAACAATGGGGTCGTAA

Coding sequence (CDS)

ATGTCTTTGGTGAATCCCTCAGCTGGACGTGCATTCATATGGATCGTCACTTGCTTTCTCTTCTTTTCCATTGTCAGCGGCGGTGGTTGTCTTTTGATGTACATGATCCTCCCTGAGACCGAAACTACCGCTTGGCTACCCGTCGCCGGTTTGTCCTTGGTCTGCCTCCCTTGGTTCTTCTGGCTCTTAACTTTCTTCTATAGAGTCATCTCACGTGCATGTGGTTTTAGAGTCTCCCTTGGTATTGGTGTGGAGGTAGGTGCAAATAACGCAAATGCCAATAATAATAATAATAACAATAATGCATCTGCTGAATCCCCTCAATGCGATGTGGGAGATCGAGCTAATGAGGAGGACGACAATGGTGATCAAAGGCGAAGCAATTCGTCATCCAACAACTCAGTAGCATCTCGTGAGAGTGAAATGCCATTAGCCATAACAATGGGGTCGTAA

Protein sequence

MSLVNPSAGRAFIWIVTCFLFFSIVSGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFFWLLTFFYRVISRACGFRVSLGIGVEVGANNANANNNNNNNNASAESPQCDVGDRANEEDDNGDQRRSNSSSNNSVASRESEMPLAITMGS

Homology

[Close]

BLAST of ClCG02G000350 vs. NCBI nr
Match: XP_038900833.1 (uncharacterized protein LOC120087896 [Benincasa hispida])

HSP 1 Score: 266.9 bits (681), Expect = 1.0e-67
Identity = 140/151 (92.72%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSIVSGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60
           MSLVNPSAGRAFIWIVTCFLFFSI+SGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSIISGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60

Query: 61  WLLTFFYRVISRACGFRVSLGIGVEVGANNANANNNNNNNNASAESPQCDVGDRANEE-D 120
           WLLTFFYRVISRACGFRVS+GIGV+VGA+NANANNNNNNNNASAESP+ D GDR +EE D
Sbjct: 61  WLLTFFYRVISRACGFRVSIGIGVDVGADNANANNNNNNNNASAESPRHDGGDRVDEEDD 120

Query: 121 DNGDQRRSNSSSNNSVASRESEMPLAITMGS 151
           DNGDQRRSNSSSNNS+ASRESEMPLAITMGS
Sbjct: 121 DNGDQRRSNSSSNNSIASRESEMPLAITMGS 151

[Close]

BLAST of ClCG02G000350 vs. NCBI nr
Match: XP_011649431.1 (putative uncharacterized protein DDB_G0284715 [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 2.2e-62
Identity = 128/150 (85.33%), Postives = 139/150 (92.67%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSIVSGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60
           MSLVNPSAGRAFIWIVTCFLFFSI+SGGGCLLMYMILPETETTAWLP+ GLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF 60

Query: 61  WLLTFFYRVISRACGFRVSLGIGVEVGANNANANNNNNNNNASAESPQCDVGDRANEEDD 120
           WLLTFFYRV+SRACGFRVSLGIG +V +NNANANNNNNNN +SAES Q DVG+R NE+++
Sbjct: 61  WLLTFFYRVLSRACGFRVSLGIGADVSSNNANANNNNNNNASSAESAQQDVGERDNEDNN 120

Query: 121 NGDQRRSNSSSNNSVASRESEMPLAITMGS 151
           N DQR SNSSSNNS+ SRESEMPLAITM S
Sbjct: 121 NADQRHSNSSSNNSIVSRESEMPLAITMAS 150

[Close]

BLAST of ClCG02G000350 vs. NCBI nr
Match: KAA0040748.1 (hypothetical protein E6C27_scaffold703G00110 [Cucumis melo var. makuwa] >TYK02064.1 hypothetical protein E5676_scaffold680G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 242.3 bits (617), Expect = 2.7e-60
Identity = 125/151 (82.78%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSIVSGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60
           MSLVNPSAGRAFIWIVTCFLFFSI+SGGGCLLMYMILPE+E+T WLP+ GLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSIISGGGCLLMYMILPESESTEWLPITGLSLVCLPWFF 60

Query: 61  WLLTFFYRVISRACGFRVSLGIGVEVGANNANANNNNNNNNA-SAESPQCDVGDRANEED 120
           WLLTFFYRVISRACG+RVSLG G +VG NN N NNNNNNNNA SAESP+ DVG+R NE++
Sbjct: 61  WLLTFFYRVISRACGYRVSLGTGADVGTNNVNDNNNNNNNNASSAESPRQDVGERGNEDN 120

Query: 121 DNGDQRRSNSSSNNSVASRESEMPLAITMGS 151
           +N DQR+SNSSSNNS+ SRESEMPLAITM S
Sbjct: 121 NNVDQRKSNSSSNNSIVSRESEMPLAITMAS 151

[Close]

BLAST of ClCG02G000350 vs. NCBI nr
Match: XP_008460874.1 (PREDICTED: putative uncharacterized protein DDB_G0283431 [Cucumis melo])

HSP 1 Score: 241.5 bits (615), Expect = 4.6e-60
Identity = 125/151 (82.78%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSIVSGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60
           MSLVNPSAGRAFIWIVTCFLFFSI+SGGGCLLMYMILPE+E+T WLP+ GLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSIISGGGCLLMYMILPESESTEWLPITGLSLVCLPWFF 60

Query: 61  WLLTFFYRVISRACGFRVSLGIGVEVGANNANANNNNNNNNA-SAESPQCDVGDRANEED 120
           WLLTFFYRVISRACG+RVSLG G +VG NN N NNNNNNNNA SAESP+ DVG+R NE++
Sbjct: 61  WLLTFFYRVISRACGYRVSLGTGEDVGTNNVNDNNNNNNNNASSAESPRQDVGERGNEDN 120

Query: 121 DNGDQRRSNSSSNNSVASRESEMPLAITMGS 151
           +N DQR+SNSSSNNS+ SRESEMPLAITM S
Sbjct: 121 NNVDQRKSNSSSNNSIVSRESEMPLAITMAS 151

[Close]

BLAST of ClCG02G000350 vs. NCBI nr
Match: KAE8651991.1 (hypothetical protein Csa_016945 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 2.6e-50
Identity = 110/150 (73.33%), Postives = 119/150 (79.33%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSIVSGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60
           MSLVNPSAGRAFIWIVTCFLFFSI+SGGGCLLMYMILPETETTAWLP+ GLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF 60

Query: 61  WLLTFFYRVISRACGFRVSLGIGVEVGANNANANNNNNNNNASAESPQCDVGDRANEEDD 120
           WLLTFFYRV+SRACGFRVSLGIG +                        DVG+R NE+++
Sbjct: 61  WLLTFFYRVLSRACGFRVSLGIGAD------------------------DVGERDNEDNN 120

Query: 121 NGDQRRSNSSSNNSVASRESEMPLAITMGS 151
           N DQR SNSSSNNS+ SRESEMPLAITM S
Sbjct: 121 NADQRHSNSSSNNSIVSRESEMPLAITMAS 126

[Close]

BLAST of ClCG02G000350 vs. ExPASy TrEMBL
Match: A0A0A0LJX6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G336080 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.1e-62
Identity = 128/150 (85.33%), Postives = 139/150 (92.67%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSIVSGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60
           MSLVNPSAGRAFIWIVTCFLFFSI+SGGGCLLMYMILPETETTAWLP+ GLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF 60

Query: 61  WLLTFFYRVISRACGFRVSLGIGVEVGANNANANNNNNNNNASAESPQCDVGDRANEEDD 120
           WLLTFFYRV+SRACGFRVSLGIG +V +NNANANNNNNNN +SAES Q DVG+R NE+++
Sbjct: 61  WLLTFFYRVLSRACGFRVSLGIGADVSSNNANANNNNNNNASSAESAQQDVGERDNEDNN 120

Query: 121 NGDQRRSNSSSNNSVASRESEMPLAITMGS 151
           N DQR SNSSSNNS+ SRESEMPLAITM S
Sbjct: 121 NADQRHSNSSSNNSIVSRESEMPLAITMAS 150

[Close]

BLAST of ClCG02G000350 vs. ExPASy TrEMBL
Match: A0A5A7TCV0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00470 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 125/151 (82.78%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSIVSGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60
           MSLVNPSAGRAFIWIVTCFLFFSI+SGGGCLLMYMILPE+E+T WLP+ GLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSIISGGGCLLMYMILPESESTEWLPITGLSLVCLPWFF 60

Query: 61  WLLTFFYRVISRACGFRVSLGIGVEVGANNANANNNNNNNNA-SAESPQCDVGDRANEED 120
           WLLTFFYRVISRACG+RVSLG G +VG NN N NNNNNNNNA SAESP+ DVG+R NE++
Sbjct: 61  WLLTFFYRVISRACGYRVSLGTGADVGTNNVNDNNNNNNNNASSAESPRQDVGERGNEDN 120

Query: 121 DNGDQRRSNSSSNNSVASRESEMPLAITMGS 151
           +N DQR+SNSSSNNS+ SRESEMPLAITM S
Sbjct: 121 NNVDQRKSNSSSNNSIVSRESEMPLAITMAS 151

[Close]

BLAST of ClCG02G000350 vs. ExPASy TrEMBL
Match: A0A1S3CDW9 (Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103499619 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.2e-60
Identity = 125/151 (82.78%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSIVSGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60
           MSLVNPSAGRAFIWIVTCFLFFSI+SGGGCLLMYMILPE+E+T WLP+ GLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSIISGGGCLLMYMILPESESTEWLPITGLSLVCLPWFF 60

Query: 61  WLLTFFYRVISRACGFRVSLGIGVEVGANNANANNNNNNNNA-SAESPQCDVGDRANEED 120
           WLLTFFYRVISRACG+RVSLG G +VG NN N NNNNNNNNA SAESP+ DVG+R NE++
Sbjct: 61  WLLTFFYRVISRACGYRVSLGTGEDVGTNNVNDNNNNNNNNASSAESPRQDVGERGNEDN 120

Query: 121 DNGDQRRSNSSSNNSVASRESEMPLAITMGS 151
           +N DQR+SNSSSNNS+ SRESEMPLAITM S
Sbjct: 121 NNVDQRKSNSSSNNSIVSRESEMPLAITMAS 151

[Close]

BLAST of ClCG02G000350 vs. ExPASy TrEMBL
Match: A0A6J1EV39 (uncharacterized protein LOC111438319 OS=Cucurbita moschata OX=3662 GN=LOC111438319 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 7.5e-48
Identity = 106/150 (70.67%), Postives = 125/150 (83.33%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSIVSGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60
           MSLV+PSAGRAF+W V   LF  I+SGG CLL+Y+ILPETE+TAWLPVAGLSLVCLPWFF
Sbjct: 1   MSLVDPSAGRAFVWFVFFSLFLCILSGGACLLVYIILPETESTAWLPVAGLSLVCLPWFF 60

Query: 61  WLLTFFYRVISRACGFRVSLGIGVEVGANNANANNNNNNNNASAESPQCDVGDRANEEDD 120
           W+LTFFYRVISRACGFRVSL +     AN+ N ++NNNNNN+S ESP+CD   +A E+ +
Sbjct: 61  WILTFFYRVISRACGFRVSLAMA--TSANDTNDDDNNNNNNSSGESPRCDARAQAEEDGN 120

Query: 121 NGDQRRSNSSSNNSVASRESEMPLAITMGS 151
           N DQRRSN SSNNS+ SRESE+P AI+MGS
Sbjct: 121 NDDQRRSNLSSNNSIMSRESEIPFAISMGS 148

[Close]

BLAST of ClCG02G000350 vs. ExPASy TrEMBL
Match: A0A6J1G7P7 (uncharacterized protein LOC111451588 OS=Cucurbita moschata OX=3662 GN=LOC111451588 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.2e-45
Identity = 108/150 (72.00%), Postives = 120/150 (80.00%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSIVSGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60
           MSLV+PS GR  IWIVT  LF S++SGGGCLLMY+ LPETE TAWLPVAGLSLVCLPWFF
Sbjct: 1   MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60

Query: 61  WLLTFFYRVISRACGFRVSLGIGVEVGANNANANNNNNNNNASAESPQCDVGDRANEEDD 120
           W LTF YR+ISRACGFRVSLG+ V   A  A  NN N +NN   ESPQ D G +AN+ED 
Sbjct: 61  WFLTFLYRIISRACGFRVSLGLVVNEDA--AATNNENADNNTHNESPQSDAGCQANKED- 120

Query: 121 NGDQRRSNSSSNNSVASRESEMPLAITMGS 151
            G+QR+SNSSSN+S ASRESE PLAITMGS
Sbjct: 121 -GNQRQSNSSSNSSGASRESEKPLAITMGS 146

[Close]

BLAST of ClCG02G000350 vs. TAIR 10
Match: AT4G30770.1 (Putative membrane lipoprotein )

HSP 1 Score: 106.7 bits (265), Expect = 1.7e-23
Identity = 73/163 (44.79%), Postives = 95/163 (58.28%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSIVSGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60
           M + +P AG+AFI ++T FLF SI  GGGCL+ Y ILP      WL   G+  VCLPWFF
Sbjct: 1   MPVPDPRAGQAFICLITLFLFLSIAVGGGCLIAYTILP--YPPVWLSYLGIVFVCLPWFF 60

Query: 61  WLLTFFYRVISRACGFRVSLGIGVEVGANNANANNNNNNNN-----ASAESPQCD----- 120
           W+LTF YR++SR  GFR+ +G     G NN NAN      +      S ESP  D     
Sbjct: 61  WILTFAYRIVSRTFGFRMVVG----SGGNNNNANGETMTRDLDPPEQSLESPDDDDPEPI 120

Query: 121 ---VGDRANEEDDNGDQRRSNSSSNNSVASRESEMPLAITMGS 151
               G      + N  ++R ++SSN+++AS ESEMPLAI+M S
Sbjct: 121 AHPQGQVLVSIEGNQSKKRMSTSSNSTIASHESEMPLAISMAS 157

The following BLAST results are available for this feature:

BLAST of ClCG02G000350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900833.1	1.0e-67	92.72	uncharacterized protein LOC120087896 [Benincasa hispida]	[more]
XP_011649431.1	2.2e-62	85.33	putative uncharacterized protein DDB_G0284715 [Cucumis sativus]	[more]
KAA0040748.1	2.7e-60	82.78	hypothetical protein E6C27_scaffold703G00110 [Cucumis melo var. makuwa] >TYK0206...	[more]
XP_008460874.1	4.6e-60	82.78	PREDICTED: putative uncharacterized protein DDB_G0283431 [Cucumis melo]	[more]
KAE8651991.1	2.6e-50	73.33	hypothetical protein Csa_016945 [Cucumis sativus]	[more]

BLAST of ClCG02G000350 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG02G000350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJX6	1.1e-62	85.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G336080 PE=4 SV=1	[more]
A0A5A7TCV0	1.3e-60	82.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CDW9	2.2e-60	82.78	Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103499619 PE=4 SV=1	[more]
A0A6J1EV39	7.5e-48	70.67	uncharacterized protein LOC111438319 OS=Cucurbita moschata OX=3662 GN=LOC1114383...	[more]
A0A6J1G7P7	1.2e-45	72.00	uncharacterized protein LOC111451588 OS=Cucurbita moschata OX=3662 GN=LOC1114515...	[more]

BLAST of ClCG02G000350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30770.1	1.7e-23	44.79	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..107
None	No IPR available	PANTHER	PTHR34964:SF3	MEMBRANE LIPOPROTEIN-RELATED	coord: 5..148
None	No IPR available	PANTHER	PTHR34964	MEMBRANE LIPOPROTEIN-RELATED	coord: 5..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G000350.1	ClCG02G000350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane