ClCG01G024990 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G024990
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	F-box domain-containing protein
Location	CG_Chr01: 38032694 .. 38036594 (+)
RNA-Seq Expression	ClCG01G024990
Synteny	ClCG01G024990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATGTGAAGTTCTCTTTCCATTACAGTAACTCTAACTAATGTTTTGTTTTCTGAGTATCTTCTATTTGTCATTTTGACATCATGTAAAGCAACTCTAGGTTGTATTGAATTTTTGGGTATTGAAGTAATGGATGTAACTAAGCAACTCCTGATTTTATTGAATTTTTGGGTAGAAGTAATGGATGGTAAACTAAGCAACTCTAGGGCTGTATTGAAACTTTTTGTACTTAAACTAATGGATGGTATGTCATATCAAAAAGATGATTGGGACTAAAAATAGTTATTTTAGTTTTTTATTTGAAATTTTTATCTCTTAGTTTAAAACTTTAAAATATGTTGTCTTTATTAGAAGTAAAAATCTATTTCTAATATATCCATAACTATTACTCAACTTCTTGAAAAAGATTATTCAACCTAAACCGAACAATAACGAAAAAGGTAGTGTCTAGTCTACTATTAGGCCATGAAAAAAGTTGTAACAAAAGAAAGAAATATGTCTCCATCGAGGTTGACTAAAGAAAAAAAAAAAGTTATATCTCTTTCTTTTTTTGTAAATCACATTCATCTTGAAGATTCTTCAAAAGCTTAGAAAATATATTTAAAAAGAGCATAGAATACATATGGTCAAATCATTCATATCCATATCTTCAATTCTAGGTTTCAAAAATTGTATGATGCTATTTGTTTTATGATTCTCAATTGAAATGTAAATTCAACGTGTATAAACATATCTTCCTTTTCCTTTTCACATTCTCAATCTATATATAACCTATATCTTTATAAATATACAAATGTTTAAGTATCTCGTGAGATGAAAATTTTAGAATATAAAAAGTTATCTCTTTATCTTTGAAATTTAATTATAAAACATTATGAATTTAATGGTAAAACTTCAAATGGTTCAAACTTTTAAAGTTGGAGTAATTATTCTTTTGAATCACAAATAAGTTTATCAAAATGTACATCTAGTCTCTATCACTCATAAATAGCAATTATATTTATAAATACCTGTTTTATTTAATTTAAATCGAATATATATATATTCTATTTAAGTTATAAATAAAAATCAAATTTAAACAAATAGAGGAGTCCGAAAACGAGCGAAGCCTTGAGTCGATCGGAAAAAGGGCCGAACTGGCTTGAACTGCCTGCAGTCGTAATGTGTATGATTCTGCAGAGGCTAGGCGCCATTGAAATCCTCCACAGCGCTCAAGATGTCTGCTCTTCGTGGCGGCGTCTCATCGATATGCGCAATTTGGGAGAAATGTATGCTTTGTATTGCGATTTGGAGGCTACCTGCGCCTACGCTGTTGATCTTAGTTGCGGCCAATTGATCGACATCAACATTGAATTCTTTGGCACAGATAAATTGCTCCAATACATCGCTCGGAGGTATCAATTTTATCTTTATGTTCTTCTGTTCTAGCTATACAGAACTTGACCTAAAACCTTGTGTAGTTCTACTTTCTCTGGTTGTTAGAAGAATTCTTGATTTCCTTCCATGTTCTGGCCATTTTATCTTCAGCTTCTGGTTTCAATTAGTTATTTACTCATTCTTAGTTAAAAAAACACTTTTGTTCCTCAACTTAATAATTTAGTTGTTTACTTTGCAAATATGGTCCCTAAATTTTAAAAATGGTAATAATTTAATACTTAACTTCAAAATTCCGTCAATCTCTAACCCTTCCGTTAACCTATCTTCCCTTCTCTTCCGGACAAAAATCACTAAAAGCTTGAACTGATGTGTCCAAATGAAATCACATTGGTTAATTTTGCAATTCTGAACTTACTGCTCTTTTAATATATATATTTTTTTTTGTTCCCTTACGTTCTCGAGGAAATGAATTTATAAGCATAGGCCAATCTCTTGGTTTTTTCAAAGTAACAAAAATGAATCTTTATAATCAAATGAATTGGAAAGAAGGGAAGAGAAGTTAATGGAAGGGTTAGAGATGACGGAATTTTAAAGGCAAGGATTAGATTGTTACCATTTTCAAAATAGAAGGACCAAATAGTTAATTTTGAAAATTTAAGGACTAAATTGTTACTTTTATCAAAATTTAGAAATTAATAGTAATTTTAAACAAATAAAAAAAATTACTTTTGATGTTTTGTTAGGTTTTTGTATTGCATGGGATTAGAATCTGATCACACATTTCACTTAACATGAGTATTCTGTGGGATGGCATTAAACATTTCTGTTTAATGTAATTTTGACTAAATAGAACATTGAAAGAGAGGAAGCCTAAATGCTAAACATTGCTGCAATTTTTTTTTGAAAATACTATTTCATCCTTTTCCCATAAGATCTTTCCAATATTTCATTATTACTATTTTTGACAATATGTGCTAGTGGATTGAATATTGGTCTACACACCTATACAAGTTAAGTCATGCTCATGTAGATTCCAAACACCTTTATTAGAAATGTGAATGTCCATTTGTACATCACTTATCTAGCTATGGTATGGTCATGAGAAATTTTAACCCGTCACAATTCATCGCGTGATTTTCAAAATTAATAATGAAATTGCAAATGATCAAATTTGGGACTAATTAAAAGCTGACATGTCCCAAATTAAAAGCTGACATGTGTCTCAACTTGAAATCGAAGACAAAAGTTAACTAATTCAAATGACGTGTTTTTGTGTTTTTGTCATGACAGTTGGATTAAATAAACTAATTTTGTTTAATTTGGCATTGATATTTGGATCAAAGGTTTAGGTTGACCCAAACGTCAATCAAACCCAAAAATTCAATTAGTTGGCCTAACGGCCAAATCCAACGACAAACATAGCCTAAGACCATATAAGAATTTTATAAATAGAGGAGATCTTCATTTGAGAAGTTCAGAAATTTAAGACTCTAGAGATAATTTAAATATAATTCTCCAACCATAAAAAAAAAAACTCCTTAAACTTTTGAAACACTTGAAGACTAAAGTTTTTCTTGAAGATACAAACATTTTTCCAAGATTTATCTTCAAGAACATTCACTAGTTATACTCTCCAAGTGAAGTGAACACATCCAAAAGATCAATAAGCCATAGGTAGATTCAACATACAAGATCAATAAATTAAGTTTTAATGTATAAGATCAACAACCAACTTTACTTAGGAACAAGCACCTATTTTTTGGGTCAATGGATAAATATTAGAAATTGTATCACATCCACACAAAAATCAGTAAAAATACATGTTAGTTATATGTATTTACTTTTTTTAAAATCTCATATGAACAGGTACAGTTGAACAGAATAAGCAAGTGAGTGAGCAACAAAATTACAAGAGCGAGAATAATTAACATAAGAAAAAACCCGAACATAACGCAAGCTCAATCGTAGCTTCAACAACGTTTTTTGTTTTCGAAAGATTAGTTGACGGCTCATTGAGTGCATAGATTATCTCGATCGCATCAGATTCAACAATAGGGGCTGCTTTAGAAACTTTGACATTTGAATAAAGCATAACAACCCGGTTCTAATGGCCTCACTTTCAAGCACTTTGATTGGCTAGCTATAATCAACGTGCTTAAACCCACCACAGATAAGAGATCCTCGAGAGTCATGAATCACCTACCCTAAACACCAAAAAATTTCACTGCACCATGAGGCATCAACATTAAGCTTCCAACAACCTTCAAGAGGGGACCATCGAACCTGACTCACCTAGCTCGAATCTAATGGATGCAGGGAACACAATCCTGCTATCAAAACTAGAAAGGAGAGAATTATCGATCATGTTTAGCACTGGAAGAACATCAAACTTTTTACAATGAGAATCAGCGGTGAAGAGGTGATTCTATCGACTCCACATCACAGTAACAACCTTTGGAAGATGATCACCCCCGAGATTGCTCACCAGCCACTTCAAGGCCACTCATCGCTGCAATCATAA

mRNA sequence

ATGATAACTCTAACTAATGTTTTGTTTTCTGAGTATCTTCTATTTGTCATTTTGACATCATGTAAAGCAACTCTAGGTTGTATTGAATTTTTGGGTATTGAAGTAATGGATGTAACTAAGCAACTCCTGATTTTATTGAATTTTTGGGTAGAAGTAATGGATGGTAAACTAAGCAACTCTAGGGCTAGGAGTCCGAAAACGAGCGAAGCCTTGAGTCGATCGGAAAAAGGGCCGAACTGGCTTGAACTGCCTGCAGTCGTAATGTGTATGATTCTGCAGAGGCTAGGCGCCATTGAAATCCTCCACAGCGCTCAAGATGTCTGCTCTTCGTGGCGGCGTCTCATCGATATGCGCAATTTGGGAGAAATGTATGCTTTGTATTGCGATTTGGAGGCTACCTGCGCCTACGCTGTTGATCTTAGTTGCGGCCAATTGATCGACATCAACATTGAATTCTTTGGCACAGATAAATTGCTCCAATACATCGCTCGGAGCGGTGAAGAGGTGATTCTATCGACTCCACATCACAGTAACAACCTTTGGAAGATGATCACCCCCGAGATTGCTCACCAGCCACTTCAAGGCCACTCATCGCTGCAATCATAA

Coding sequence (CDS)

ATGATAACTCTAACTAATGTTTTGTTTTCTGAGTATCTTCTATTTGTCATTTTGACATCATGTAAAGCAACTCTAGGTTGTATTGAATTTTTGGGTATTGAAGTAATGGATGTAACTAAGCAACTCCTGATTTTATTGAATTTTTGGGTAGAAGTAATGGATGGTAAACTAAGCAACTCTAGGGCTAGGAGTCCGAAAACGAGCGAAGCCTTGAGTCGATCGGAAAAAGGGCCGAACTGGCTTGAACTGCCTGCAGTCGTAATGTGTATGATTCTGCAGAGGCTAGGCGCCATTGAAATCCTCCACAGCGCTCAAGATGTCTGCTCTTCGTGGCGGCGTCTCATCGATATGCGCAATTTGGGAGAAATGTATGCTTTGTATTGCGATTTGGAGGCTACCTGCGCCTACGCTGTTGATCTTAGTTGCGGCCAATTGATCGACATCAACATTGAATTCTTTGGCACAGATAAATTGCTCCAATACATCGCTCGGAGCGGTGAAGAGGTGATTCTATCGACTCCACATCACAGTAACAACCTTTGGAAGATGATCACCCCCGAGATTGCTCACCAGCCACTTCAAGGCCACTCATCGCTGCAATCATAA

Protein sequence

MITLTNVLFSEYLLFVILTSCKATLGCIEFLGIEVMDVTKQLLILLNFWVEVMDGKLSNSRARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRLIDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYIARSGEEVILSTPHHSNNLWKMITPEIAHQPLQGHSSLQS

Homology

[Close]

BLAST of ClCG01G024990 vs. NCBI nr
Match: XP_038883506.1 (F-box protein SKIP19-like [Benincasa hispida])

HSP 1 Score: 125.2 bits (313), Expect = 6.5e-25
Identity = 63/113 (55.75%), Postives = 80/113 (70.80%), Query Frame = 0


Query: 66  KTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWR---------RLID 125
           +++  +    +  NWL+LPA VM MIL +LGAIEIL SAQ+VCSSWR         R+ID
Sbjct: 2   ESNSVIQSEAEARNWLDLPAEVMSMILLKLGAIEILTSAQNVCSSWRKICKDPLMWRVID 61

Query: 126 MRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYIARSGEEV 170
           MRN G +Y +  DLE  C +AVD SCGQLIDINIE+FGTD+LLQYI +S  ++
Sbjct: 62  MRNSGNLYDMDHDLEIMCRHAVDRSCGQLIDINIEYFGTDELLQYITQSSNQL 114

[Close]

BLAST of ClCG01G024990 vs. NCBI nr
Match: XP_015878944.1 (F-box protein SKIP19 [Ziziphus jujuba])

HSP 1 Score: 118.2 bits (295), Expect = 8.0e-23
Identity = 60/99 (60.61%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 73  RSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWR---------RLIDMRNLGEM 132
           + E+  NWLELP  V   IL RLGAIEIL SAQ+VCSSWR         R IDMRN G+ 
Sbjct: 9   QQEEERNWLELPRDVTSTILSRLGAIEILTSAQNVCSSWRNICKDPLMWRTIDMRNPGDT 68

Query: 133 YALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYI 163
           Y +  DLE  C +A+DLSCGQL+DINIEFFGTD+LL+Y+
Sbjct: 69  YGMDYDLETMCRHAIDLSCGQLVDINIEFFGTDELLKYL 107

[Close]

BLAST of ClCG01G024990 vs. NCBI nr
Match: XP_023892935.1 (putative F-box/LRR-repeat protein 23 isoform X1 [Quercus suber])

HSP 1 Score: 116.7 bits (291), Expect = 2.3e-22
Identity = 61/119 (51.26%), Postives = 79/119 (66.39%), Query Frame = 0


Query: 61  RARSP-KTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL----- 120
           + +SP  +S + S SEK  NWL+LP  V   ILQRLG IEIL +AQ VC+ WR +     
Sbjct: 9   KMKSPSSSSSSSSSSEKCRNWLDLPRDVTVSILQRLGTIEILETAQKVCTLWRNISKDPS 68

Query: 121 ----IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYIARSGEEV 170
               IDMRNLG+++ +  DLE  C +A+D SCG L DINIE+FGTDKLL YI +S  ++
Sbjct: 69  MWNSIDMRNLGDLHDMEYDLEKMCIHAIDRSCGHLQDINIEYFGTDKLLAYITQSSSQL 127

[Close]

BLAST of ClCG01G024990 vs. NCBI nr
Match: XP_030968251.1 (putative F-box/LRR-repeat protein 23 [Quercus lobata])

HSP 1 Score: 116.3 bits (290), Expect = 3.0e-22
Identity = 62/118 (52.54%), Postives = 78/118 (66.10%), Query Frame = 0


Query: 61  RARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL------ 120
           + +SP +S A S SE+  NWLELP  V   ILQRLG IEIL +AQ VC  WR +      
Sbjct: 9   KMKSP-SSSASSSSEECRNWLELPRDVTVSILQRLGTIEILETAQKVCMLWRNISKDPSM 68

Query: 121 ---IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYIARSGEEV 170
              IDMRNLG+++ +  DLE  C +A+D SCG L DINIE+FGTDKLL YI +S  ++
Sbjct: 69  WNSIDMRNLGDLHDMDYDLEKMCIHAIDRSCGHLQDINIEYFGTDKLLAYITQSSSQL 125

[Close]

BLAST of ClCG01G024990 vs. NCBI nr
Match: XP_017232301.1 (PREDICTED: F-box protein SKIP19-like [Daucus carota subsp. sativus])

HSP 1 Score: 115.5 bits (288), Expect = 5.2e-22
Identity = 57/115 (49.57%), Postives = 76/115 (66.09%), Query Frame = 0


Query: 61  RARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL------ 120
           R R P   + + +  K  NWL+LPA +   IL RLGAIEIL SAQ VC++WRR+      
Sbjct: 3   RRRKPSRPKTIKKWVKKTNWLDLPADITANILHRLGAIEILESAQKVCTAWRRICKDPAM 62

Query: 121 ---IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYIARSG 167
              IDM N G++ A+  DLE  C +A+D S GQL+DINIE+FGTD+L++Y+A  G
Sbjct: 63  WRVIDMENPGDLVAMPFDLEKMCQHAIDRSQGQLVDINIEYFGTDELMEYLAHGG 117

[Close]

BLAST of ClCG01G024990 vs. ExPASy Swiss-Prot
Match: Q9M0U9 (F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.0e-17
Identity = 53/111 (47.75%), Postives = 64/111 (57.66%), Query Frame = 0


Query: 79  NWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCD 138
           NW ELP  +   IL RLGAIEIL +AQ VC SWRR+         IDM NLG++  +  +
Sbjct: 18  NWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDMDYN 77

Query: 139 LEATCAYAVDLSCGQLIDINIEFFGTDKLLQYIARSGEEVILSTPHHSNNL 181
           LE  C +AVD S G L+DI I +FGT  LL YIA           H S+NL
Sbjct: 78  LEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIA-----------HRSSNL 117

[Close]

BLAST of ClCG01G024990 vs. ExPASy Swiss-Prot
Match: Q9S9V9 (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.4e-16
Identity = 49/117 (41.88%), Postives = 69/117 (58.97%), Query Frame = 0


Query: 56  KLSNSRARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL- 115
           K+++S + S     +L + +K  NW ELP+ +   IL RLGAIEIL +AQ VC  W R+ 
Sbjct: 157 KIASSSSLSSTPLPSLMKDKKLRNWAELPSKLTSSILLRLGAIEILQNAQKVCKPWHRVC 216

Query: 116 --------IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYIA 164
                   ID+ N  +  A   DLE+ C +AVD S G LI+I I ++GT+ L+ YIA
Sbjct: 217 KDPSMWRKIDIDNRNDRAAFKYDLESMCRHAVDRSHGGLIEIEIWYYGTNDLIMYIA 273

[Close]

BLAST of ClCG01G024990 vs. ExPASy Swiss-Prot
Match: Q9M0U6 (Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana OX=3702 GN=FBL22 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.1e-14
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 0


Query: 75  EKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYA 134
           EK  NW ELP  ++  IL RL  +EIL +A+ VC SWRR+         IDMRNL  +Y 
Sbjct: 22  EKPSNWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMRNLRRLYC 81

Query: 135 LYCDLEATCAYAVDLSCGQLIDINIE--FFGTDKLLQYIA 164
           +Y  +EA C + VDLS G L++ NI+   F T  LL Y+A
Sbjct: 82  IYA-MEACCRHVVDLSQGGLLEFNIDQWRFQTTSLLNYMA 120

[Close]

BLAST of ClCG01G024990 vs. ExPASy Swiss-Prot
Match: Q9S9V8 (Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana OX=3702 GN=FBL9 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.7e-13
Identity = 45/97 (46.39%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 79  NWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMR---NLGEMYAL 138
           NW ELP  +   IL RLGAIEIL +AQ VC SWRR+         ID+R   NL     L
Sbjct: 20  NWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNSVEL 79

Query: 139 YCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYIA 164
           +  +E  C  AVDLS G L++INI++      L YIA
Sbjct: 80  FYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIA 116

[Close]

BLAST of ClCG01G024990 vs. ExPASy Swiss-Prot
Match: Q9M0U7 (Putative F-box protein At4g05475 OS=Arabidopsis thaliana OX=3702 GN=At4g05475 PE=4 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10
Identity = 39/109 (35.78%), Postives = 58/109 (53.21%), Query Frame = 0


Query: 60  SRARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRLID--- 119
           ++ R+  T       E+  NW++LP  +   IL RL   +IL +A+ +C +WRR+     
Sbjct: 20  NKRRTTSTMFLKKDDEERINWVDLPPELTTSILLRLSVTDILDNARKLCRAWRRICKDPS 79

Query: 120 ---MRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYI 163
                NL +      D E+ C + VDLS G L++INIE F +D LL YI
Sbjct: 80  MWRKINLRDCLMYEFDFESMCRHIVDLSQGGLLEINIEHFVSDSLLSYI 128

[Close]

BLAST of ClCG01G024990 vs. ExPASy TrEMBL
Match: A0A6P3ZH66 (F-box protein SKIP19 OS=Ziziphus jujuba OX=326968 GN=LOC107415145 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 3.8e-23
Identity = 60/99 (60.61%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 73  RSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWR---------RLIDMRNLGEM 132
           + E+  NWLELP  V   IL RLGAIEIL SAQ+VCSSWR         R IDMRN G+ 
Sbjct: 9   QQEEERNWLELPRDVTSTILSRLGAIEILTSAQNVCSSWRNICKDPLMWRTIDMRNPGDT 68

Query: 133 YALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYI 163
           Y +  DLE  C +A+DLSCGQL+DINIEFFGTD+LL+Y+
Sbjct: 69  YGMDYDLETMCRHAIDLSCGQLVDINIEFFGTDELLKYL 107

[Close]

BLAST of ClCG01G024990 vs. ExPASy TrEMBL
Match: A0A7N2LPI5 (F-box domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22
Identity = 62/118 (52.54%), Postives = 78/118 (66.10%), Query Frame = 0


Query: 61  RARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL------ 120
           + +SP +S A S SE+  NWLELP  V   ILQRLG IEIL +AQ VC  WR +      
Sbjct: 9   KMKSP-SSSASSSSEECRNWLELPRDVTVSILQRLGTIEILETAQKVCMLWRNISKDPSM 68

Query: 121 ---IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYIARSGEEV 170
              IDMRNLG+++ +  DLE  C +A+D SCG L DINIE+FGTDKLL YI +S  ++
Sbjct: 69  WNSIDMRNLGDLHDMDYDLEKMCIHAIDRSCGHLQDINIEYFGTDKLLAYITQSSSQL 125

[Close]

BLAST of ClCG01G024990 vs. ExPASy TrEMBL
Match: A0A7N2LRH5 (F-box domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.6e-21
Identity = 61/119 (51.26%), Postives = 78/119 (65.55%), Query Frame = 0


Query: 63  RSPKTSEALSRSEKGP---NWLELPAVVMCMILQRLGAIEILHSAQDVCSSWR------- 122
           R+P T+ A  R+ K     NWL+LP  V   ILQRLGAI+IL SAQ VC  WR       
Sbjct: 12  RNPNTTMARKRARKTKEYRNWLDLPKDVTVSILQRLGAIDILESAQKVCMLWRNICKDPS 71

Query: 123 --RLIDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYIARSGEEV 170
             R IDM+NLG+++ +  DLE  C +A+D SCGQL DINIE+FGTD+LL YI +S  ++
Sbjct: 72  MWRAIDMQNLGDLHDMPYDLEKMCIHAIDRSCGQLRDINIEYFGTDELLIYITQSTSQL 130

[Close]

BLAST of ClCG01G024990 vs. ExPASy TrEMBL
Match: A0A6A3AZC5 (Putative F-box/LRR-repeat protein 23 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110356pilonHSYRG00184 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.6e-21
Identity = 56/102 (54.90%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 71  LSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLG 130
           +S + +  NWLELP  V   IL RLGAIEIL+SAQ+VCS WR++         IDMRNLG
Sbjct: 1   MSAAAETRNWLELPQDVTASILSRLGAIEILNSAQNVCSLWRKISKDPSMWKSIDMRNLG 60

Query: 131 EMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYIA 164
           +++ +  DLE  C +AV+ SCG L+DINIE+FGTD+LL YI+
Sbjct: 61  DLFDMEYDLEKMCVHAVNRSCGHLLDINIEYFGTDELLFYIS 102

[Close]

BLAST of ClCG01G024990 vs. ExPASy TrEMBL
Match: A0A6J1AFD6 (LOW QUALITY PROTEIN: putative F-box/LRR-repeat protein 23 OS=Herrania umbratica OX=108875 GN=LOC110417516 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.0e-20
Identity = 61/112 (54.46%), Postives = 74/112 (66.07%), Query Frame = 0


Query: 61  RARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL------ 120
           R ++  T+EA +R     NWLELP  V   IL RLGAIEIL  AQ+VCS WR++      
Sbjct: 315 RKQAMTTAEAETR-----NWLELPLDVTASILSRLGAIEILKGAQNVCSQWRKICKDPLM 374

Query: 121 ---IDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYIA 164
              IDM NLG++  + C LE  CA+AVD SCG L+DINIE FGTDKLL +IA
Sbjct: 375 WRSIDMHNLGDIAEMDCILEIMCAHAVDRSCGHLLDINIECFGTDKLLLHIA 421

[Close]

BLAST of ClCG01G024990 vs. TAIR 10
Match: AT4G05460.1 (RNI-like superfamily protein )

HSP 1 Score: 89.7 bits (221), Expect = 2.8e-18
Identity = 53/111 (47.75%), Postives = 64/111 (57.66%), Query Frame = 0


Query: 79  NWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCD 138
           NW ELP  +   IL RLGAIEIL +AQ VC SWRR+         IDM NLG++  +  +
Sbjct: 18  NWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDMDYN 77

Query: 139 LEATCAYAVDLSCGQLIDINIEFFGTDKLLQYIARSGEEVILSTPHHSNNL 181
           LE  C +AVD S G L+DI I +FGT  LL YIA           H S+NL
Sbjct: 78  LEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIA-----------HRSSNL 117

[Close]

BLAST of ClCG01G024990 vs. TAIR 10
Match: AT4G05490.1 (RNI-like superfamily protein )

HSP 1 Score: 80.1 bits (196), Expect = 2.2e-15
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 0


Query: 75  EKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYA 134
           EK  NW ELP  ++  IL RL  +EIL +A+ VC SWRR+         IDMRNL  +Y 
Sbjct: 22  EKPSNWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMRNLRRLYC 81

Query: 135 LYCDLEATCAYAVDLSCGQLIDINIE--FFGTDKLLQYIA 164
           +Y  +EA C + VDLS G L++ NI+   F T  LL Y+A
Sbjct: 82  IYA-MEACCRHVVDLSQGGLLEFNIDQWRFQTTSLLNYMA 120

[Close]

BLAST of ClCG01G024990 vs. TAIR 10
Match: AT4G05497.1 (RNI-like superfamily protein )

HSP 1 Score: 75.5 bits (184), Expect = 5.5e-14
Identity = 45/97 (46.39%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 79  NWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRL---------IDMR---NLGEMYAL 138
           NW ELP  +   IL RLGAIEIL +AQ VC SWRR+         ID+R   NL     L
Sbjct: 20  NWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNSVEL 79

Query: 139 YCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYIA 164
           +  +E  C  AVDLS G L++INI++      L YIA
Sbjct: 80  FYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIA 116

[Close]

BLAST of ClCG01G024990 vs. TAIR 10
Match: AT4G05475.1 (RNI-like superfamily protein )

HSP 1 Score: 68.2 bits (165), Expect = 8.8e-12
Identity = 39/109 (35.78%), Postives = 58/109 (53.21%), Query Frame = 0


Query: 60  SRARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGAIEILHSAQDVCSSWRRLID--- 119
           ++ R+  T       E+  NW++LP  +   IL RL   +IL +A+ +C +WRR+     
Sbjct: 20  NKRRTTSTMFLKKDDEERINWVDLPPELTTSILLRLSVTDILDNARKLCRAWRRICKDPS 79

Query: 120 ---MRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYI 163
                NL +      D E+ C + VDLS G L++INIE F +D LL YI
Sbjct: 80  MWRKINLRDCLMYEFDFESMCRHIVDLSQGGLLEINIEHFVSDSLLSYI 128

[Close]

BLAST of ClCG01G024990 vs. TAIR 10
Match: AT4G05470.1 (RNI-like superfamily protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-10
Identity = 45/132 (34.09%), Postives = 66/132 (50.00%), Query Frame = 0


Query: 38  VTKQLLILLNFWVEVMDGKLSNSRARSPKTSEALSRSEKGPNWLELPAVVMCMILQRLGA 97
           +T    +L  F  E  +G+  N +  +  T E+L   E+  NW++LP  +   IL RL  
Sbjct: 7   MTSSTTLLSLFMKEDEEGR--NKKTTTSTTLESLLMKER-RNWVDLPPELTTSILLRLSL 66

Query: 98  IEILHSAQDVCSSWRRLID------MRNLGEMYALYCDLEATCAYAVDLSCGQLIDINI- 157
            +IL +AQ VC  WRR+          N  +      D  + C + VDLS G L++IN+ 
Sbjct: 67  TDILDNAQKVCKEWRRICKDPSMWRKINTRDCLMYNFDFVSMCRHIVDLSQGGLLEINVD 126

Query: 158 EFFGTDKLLQYI 163
           E F +D LL YI
Sbjct: 127 EHFLSDSLLSYI 135

The following BLAST results are available for this feature:

BLAST of ClCG01G024990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883506.1	6.5e-25	55.75	F-box protein SKIP19-like [Benincasa hispida]	[more]
XP_015878944.1	8.0e-23	60.61	F-box protein SKIP19 [Ziziphus jujuba]	[more]
XP_023892935.1	2.3e-22	51.26	putative F-box/LRR-repeat protein 23 isoform X1 [Quercus suber]	[more]
XP_030968251.1	3.0e-22	52.54	putative F-box/LRR-repeat protein 23 [Quercus lobata]	[more]
XP_017232301.1	5.2e-22	49.57	PREDICTED: F-box protein SKIP19-like [Daucus carota subsp. sativus]	[more]

BLAST of ClCG01G024990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0U9	4.0e-17	47.75	F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1	[more]
Q9S9V9	4.4e-16	41.88	Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE...	[more]
Q9M0U6	3.1e-14	46.00	Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana OX=3702 GN=FBL22 PE...	[more]
Q9S9V8	7.7e-13	46.39	Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana OX=3702 GN=FBL9 PE=4...	[more]
Q9M0U7	1.2e-10	35.78	Putative F-box protein At4g05475 OS=Arabidopsis thaliana OX=3702 GN=At4g05475 PE...	[more]

BLAST of ClCG01G024990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P3ZH66	3.8e-23	60.61	F-box protein SKIP19 OS=Ziziphus jujuba OX=326968 GN=LOC107415145 PE=4 SV=1	[more]
A0A7N2LPI5	1.5e-22	52.54	F-box domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A7N2LRH5	1.6e-21	51.26	F-box domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A6A3AZC5	3.6e-21	54.90	Putative F-box/LRR-repeat protein 23 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig...	[more]
A0A6J1AFD6	1.0e-20	54.46	LOW QUALITY PROTEIN: putative F-box/LRR-repeat protein 23 OS=Herrania umbratica ...	[more]

BLAST of ClCG01G024990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G05460.1	2.8e-18	47.75	RNI-like superfamily protein	[more]
AT4G05490.1	2.2e-15	46.00	RNI-like superfamily protein	[more]
AT4G05497.1	5.5e-14	46.39	RNI-like superfamily protein	[more]
AT4G05475.1	8.8e-12	35.78	RNI-like superfamily protein	[more]
AT4G05470.1	1.7e-10	34.09	RNI-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 78..120 e-value: 1.5E-7 score: 31.1
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 77..127 score: 8.570165
None	No IPR available	GENE3D	1.20.1280.50		coord: 73..123 e-value: 3.2E-6 score: 28.9
None	No IPR available	PANTHER	PTHR38926	F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSED	coord: 73..165
None	No IPR available	PANTHER	PTHR38926:SF2	F-BOX/LRR-REPEAT PROTEIN 21-RELATED	coord: 73..165
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 67..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G024990.2	ClCG01G024990.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding