ClCG01G024560 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G024560
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	la-related protein 6A
Location	CG_Chr01: 37590271 .. 37596059 (-)
RNA-Seq Expression	ClCG01G024560
Synteny	ClCG01G024560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGCGATGAGCCTACGACTACGTCCTCCACCGCCGCCGTCTCTTCCTCCGTCGCCGAGTCCATCCTCTCGCCTCCACCGCAAGATCCCGTCGGATCACCCAGTCGCGATGTGACGGAGATTCAATCATTGATATCCGAAGGCGATCATGACCAGGGACCCAGGGAGAACCACGATCACGGTCACGAACACGCAGTTAGAGCCGCTGTTCTCCCGGAGGATCTGAAACACAGGATCGTTAAGCAGGTAACTCTACCGCCTCTGCCCATCCCCTCTTCGAATTGGACCTTGAATGCTTCGCTAGGTTTTGCCTGGTATGCGATTTTTGTATTTTCTATGCATTAATTTTAAACCACTCGCTTGAATGGGAGTTGGGAAGTTTAATTTTTCAGGATTGAGAATCTGTATGTAAATCCGTTTTCCCTCTTGCACGCGTATTTGAATTCCTATGTGTGACTTTTTGCATATATAGTTGCATCACTTAGTGCAAATATTAGAACGTTAGGAAGCGTATGGCTAGTCTATCAACTGCAAGGGGAGTTATGATATCAATTGATCATTTCGCACCCGTGATATCATATAATTTGTGGTTTGTTATGATGTAAGACCTGAAGAGAGCATTTAGATTATGATAATTTGAATTTCAATTCATTCAGCCTTTCTATAATTCCGAAGAGTGTTTTAGAGTATGGCATCGTTGTCTTTATGATTGGTCTAAATATCTTCGCAGGTAGAGTACTACTTCAGCGATGAAAACTTGCCCACCGATAAACACTTGTTGGGATTAATCAAAAAGAACAAGGAGGGTTTTGGTATGTTACTTGGCTAATCTTCACTTTTATGGAATTTTGTTATCTTTCAATGGAAGTGAAAACTCCCAGTGGTATTGACCTCCTTTAAAGGGTTGAAGATGCATAATAAGTCACGTGAGAATTTGGTTTTTTTGATACTTAGTCAAATTTTGAACTATGAACAAGTAATCAATAAGTAATGAGTTACAGAATGCTTTGGAAGAATTTCCTCTCGAGCCAGACACAAAACAGTTCAACTGAGGAAGATTTGTGTACTTTTAATTATCTTTTCTACTGTATGACCTATGGAAACCAGTAAGCTTTGATTGCTCTCATTTCATGGATGTGGATTGCCTTAGAAATTGCAATATAGCTTTTCTAGACATTTTTAATTAGCGGTCTAATTTGACAGCATTTTGCTTCGAGCATAGGAGTTGCAAAGAGTATAATAGGAAAAAGAATCCATTTTATGGAAATGCTTCAGGAGGTTATGTTTGAGTATCCCAGCTTGCTAAATAGGGTGCCTACTCTGCATAGATTAGGCATCTAGGCCTTCCAACTTATTTTAGTGGAAGGACGTGCTATGTGTATAAATCCATTAGTTTGTAAGTTTCTTTTAATTTTTTTTGTTCTTAATATTTTTTAGGTCTGTTGCACTGTGACTTCAGTTCTTGTCCTTAATTTCTAACCAATGAGCAAGGGGCGACTTTCAGATTTCGATTTCTGATCAATATATTTTAGCATCAAACTTGAAATTACCTTTATATTAACACAAAAGGGATGAATCTAAGGGATGGCTCACTTGTGACTTTGTGAGTTCTTGGGTGTTCAATCGTCTAAAACAACCTGAGATTACTTGACATATCATATTGATATAGAATTGCTCTGGAGGTGGTTTTTTCTTGTTTTATTCATATTTGTTTTCCGTATTTTCCCCCATAACTTTGGTATTGATGTAAAATTTATAGAATGGTTATATTTTACATGATAACTTGGCAAGAGAGGAGATGGGATGATGAGCCATGTAGGCACTTCACAAGTTGCATTTCTTAGACATTTTCTGGTGCAGCCAGATTTGTCTGTGATGAATTTCATGGACTGTGACTGTTCTGAATTAAGTATGGTTGATTACTGATCGTTTGCTTCTCTATTCATGACATTATGGCCTTTGACGTGTGCTGAACTTGTTTCATGTAAAGGACTAGAACCAACCAACGGCAATTTATCTACCAATGGTTATAGCCTTTTCTGATTTTTTACATCACCTGCACAGCCTCTTTCCTTAGAAATGTAGTTCAATATGATAAATCTAGATATCTTGAATTAAAGATGAAGTATGTAACATTTTCACATTCTAGGCCAACCGAGGTGTAAGTAGTTATTGTATGGCACCAGATTCTCCTATTTGTTTTCTCATTTTCTCATACCCATATCTTTATATATATTTATATTTGATGAATGAAAACAAGACTGTTCATCTCCTATTTTTCCAATTTTATCCTCTTTGTTTTTGTTCTTCTTTTTCTCTCTATAATTTTTACTGTCCGTGGATTCTGATTTTCATAATATCTTGTAGCAATCAATCGTCCTGTTATGAATCCATAAATATGTTGAAATTCATTCTCTCTTTATTTGTCTAGTTCCAATAGCTATTATTGCTGCCTTCAAGAGAATGAAAAAACTTACTCAAGATCATTCATTTATTACTGCTGCCCTGAGGGAATCCTCTGTTCTTGTAAGATACTTCATGCATCCTTTTAAAATGTATCAACCAAAGCCTCTTTTTGCGTAATGCCGTGAGCACATGTTAATTTGCCTGCCACAACTGCAGGTCGTAAGTTCTAATGGGAAGAAAGTCAAGCGACTTCATCCTATTCCATTGCCTGAGACTAGGGATCCTAAGGTACTTGCTTGTATACTTAAGAAATCAACAATTGATGTGTAACTTATGGTAACTGTATGACCTTTCTATGTGGAATATAGTTATTTACTATTTTGGTAGAAAATCTACCTGAGGATCATTCAGAGGAGAATATCAAACGAATTTTTGGAGCAGCTGGACGGTATGCTATTTCTGTTTCCAGAACTATGTTTTCACAAAAATATTTCTCCCTTCACACTTCGCTGCATGAAAAACTGTTTTTGTATTTTTAGCATAAGAAGTGTCACCATTTGTGACCCACATGTGGTAGAGAAGTTGGGGAAAAGCAGCAAGGGTGATGTGCTGATCAGTAATAAGGTAAATTGTGGAACTAGCTGGTAGACATAAAAATTTTCTGTTTTAGATTAGAGGGGACATTGTGGTGATGTATTTGGTTATTACTCATACTTCCCATTTGAGCTCTAGTAATGATTCTAATGAAAGTGGACATTGTGCTTTCTGTGCTTCTTTATATTCTCACATTAACCATGAAACTAGTGTTCTCTCAATTTGTTTTTCTCTTGTCAAAATCATCATATGTACAACATTTGAGAAAAGGTAGTTAAGAAATAAAAATAAAATGAAGAGGGGTTTTCTTTCACCAGACTGAAATTTTGTTGAAAGTAGCATGTTGGGACATGAAGATAAGGAGGGAGGATTAGTCCAACGCCAGTTTGATAATGCAGGTGCAGAGAAAATTATGTGTGCACTGTTCAATACCATATGTTGTTTGATCTTCTGAGTGTCCTATTCTGTTCCTTATTACAAAAGCCAAAAGAAGAAAGTAACAATCTCCACTGATACATACATGTAGATATATATATTTATATATATTTGATATTGTTTGCACCTTGACTATATATATATAGAAAATCTTTCCTCATGCCATGTTTATGTTATATATAGTAGTTGCGTGACGTAGCCAATGTTTTAAAAAGCTATTGAGTTTAAGAATTGAGGCTCGCCTCAAGGCAAGGCTCTAATTATAAGCCTCGAGTCTTATGCCTTTGTTGAAGTATAAGAGACTTGCGCTTTCATGTGTTATCTTTACGCCTCGTCTAATGATGAATACTTTTACTAATGTGACTTAAAAAACATTGAGGACAAAAATTTATAGTATAATAATAATAGTAGTGATGTTAAAGATATCATTTTAGAATTTTTGTGAAAGTGAAAATTGTGAGGGTGTTTTTTTAATTCACTTTTATAATGATCATTATGTTTAGCAATACTTGGTCATATCAATTTAGGATATGCAAAATATTTTTAACTAAATTTGAGGTAACCTCAGACTTTCTCGCCACTTCAAGAGGAAGAACCTGGAGGCTGTCTTTACCCTATTAAAACATTCATGTAGCTATGCTTTGTGCCTTTGTCTCAGACTTCTTGATGTAAATTGAATTATATTAAAAGATCACATAAACTATGGTTACTCATTCAATCGGCCTTTGTTCTTGGTTACTATGTGTAGTTGCATGCTCTTGTGGAGTACGAGTCTCCGGAGGCTTCTGAGAGAGCTGTGAGTGACCAGATCTCTGCTCAATTTACTTTAACTTGATAATTTTACCGTGTTTGGTTTGATATCAATAGTCATTTTTCTGATGGTTCATTAGGTGGCTACTTTAAATGATGAACAAGATTGGAGAAATGGCATGCGGGTTAAGCCTCTCAAGCATCTGGTACTGTTTCTCATTTCACTTGTATATATCAAGTTGATTGTATTCACAATGTAGTTATCAACTTCAGAGTAAGCATGGCCAGAGGAAACAACACTGGCGAGCACCTGATCCCGACAAAAACAACACTGGGAGAATAACTGATCAGAATGGTCCCGACAAAAACATCCCAGGGCGAATAACTGATCAGAATGGCGATGAAGAAATTCAGAACTCTGTAAATGAGCATCATGACGATGAGCCTGATGAGGAGGTTAATGTTGCTCTTATACTTTCTTTTCCTGGATACATTCTATTGGCCACACATGTTAGTGCATGTTTATGAGTGATTTTGATATCATTAAAATTACTTTTGTCATGTTTAAAATCACTCTAAAATGCACCTTTACTTACTCAAAATCTATTCAATGTTTAATTTTACACTTTTAATTGCATTTTTTATACTATTGAAGTGGATTTTTAATGACTAAAAGCATGTTTCGAGTGATTTTGATAATGACAAAAAAGACCTTAATCATTTTAGAATGACTCCCCAACATGTCATTAATTAAATTTCTTCGTGATTTTTCATTCCGAGTCCTAGTGATTCGATTGCATGTGATCATTAGAGAGACATTTTATTATTTTATTTGTGAGTTTCCTCCTTCCACACAAACCCAAAACGTGAAAATTTCTATGAGATGAGATTGCAAGAAAATGCTTGTTATGATAACAATATATCAATTTTTCCAATTTTAGGAGGGAGATCATCAACCCAAAGACAAACATGGACATAGAGGTCGAAATCAAGGACGAACTAGAAGACAAAAGTACAAGGGCGTCAATGGAATGGGTACTGACTGATCTGATAACGATTGTAGATTTCATGTTCAGAATTTTAGCTTGATAATCTTTTGCTCTCTTTCTAGGTCATGGAACTACAACTTCTGCCCATCACATTGAACTTTCGAAACCACCCCCTGGCCCGAAAATGCCTGATGGAACTCGGGGGTTCACAATGGGGCGTGGGCGACCTCCAACCTCCAACCAAAGCACATAGTGAGAATTTCATCATGTGGGTCTGTAGAAATTTCACTTTCTATGTTTTTTACTTTGATTGATGGGCATGCTAGAACGCGTCCTGGCATATGTCTGAGTAGGTTGGCCAAAATGTATCTTCTAAATCTAACCTCAAAGCTTTGTGTCTCAAGAAAATGTTATCTTGTATAATGTTCACCTGTATGGTATGTTTAAATTTGGTGGTTTTGATTGTCAACTAAGTCTCTAACTAAAAATTCAATGCATTTATTGAAAATATGAAAAACCTTTATTTAAGTTCAATAGGGTGGGGAATCTGAATCTGTAATATCTTTGTGGTAGGATAAACGTTTTATTGTAGTTGAAGTATGTTATGTTATG

mRNA sequence

ATGGCCGGCGATGAGCCTACGACTACGTCCTCCACCGCCGCCGTCTCTTCCTCCGTCGCCGAGTCCATCCTCTCGCCTCCACCGCAAGATCCCGTCGGATCACCCAGTCGCGATGTGACGGAGATTCAATCATTGATATCCGAAGGCGATCATGACCAGGGACCCAGGGAGAACCACGATCACGGTCACGAACACGCAGTTAGAGCCGCTGTTCTCCCGGAGGATCTGAAACACAGGATCGTTAAGCAGGTAACTCTACCGCCTCTGCCCATCCCCTCTTCGAATTGGACCTTGAATGCTTCGCTAGGTTTTGCCTGCCTTTCTATAATTCCGAAGAGTGTTTTAGAGTATGGCATCGTTGTCTTTATGATTGGTCTAAATATCTTCGCAGTTCCAATAGCTATTATTGCTGCCTTCAAGAGAATGAAAAAACTTACTCAAGATCATTCATTTATTACTGCTGCCCTGAGGGAATCCTCTGTTCTTGTCGTAAGTTCTAATGGGAAGAAAGTCAAGCGACTTCATCCTATTCCATTGCCTGAGACTAGGGATCCTAAGTTATTTACTATTTTGGTAGAAAATCTACCTGAGGATCATTCAGAGGAGAATATCAAACGAATTTTTGGAGCAGCTGGACGCATAAGAAGTGTCACCATTTGTGACCCACATGTGGTAGAGAAGTTGGGGAAAAGCAGCAAGGGTGATGTGCTGATCAGTAATAAGTTGCATGCTCTTGTGGAGTACGAGTCTCCGGAGGCTTCTGAGAGAGCTGTGGCTACTTTAAATGATGAACAAGATTGGAGAAATGGCATGCGGGTTAAGCCTCTCAAGCATCTGAGTAAGCATGGCCAGAGGAAACAACACTGGCGAGCACCTGATCCCGACAAAAACAACACTGGGAGAATAACTGATCAGAATGGTCCCGACAAAAACATCCCAGGGCGAATAACTGATCAGAATGGCGATGAAGAAATTCAGAACTCTGTAAATGAGCATCATGACGATGAGCCTGATGAGGAGGAGGGAGATCATCAACCCAAAGACAAACATGGACATAGAGGTCGAAATCAAGGACGAACTAGAAGACAAAAGTACAAGGGCGTCAATGGAATGGGTCATGGAACTACAACTTCTGCCCATCACATTGAACTTTCGAAACCACCCCCTGGCCCGAAAATGCCTGATGGAACTCGGGGGTTCACAATGGGGCGTGGGCGACCTCCAACCTCCAACCAAAGCACATAGTGAGAATTTCATCATGTGGGTCTGTAGAAATTTCACTTTCTATGTTTTTTACTTTGATTGATGGGCATGCTAGAACGCGTCCTGGCATATGTCTGAGTAGGTTGGCCAAAATGTATCTTCTAAATCTAACCTCAAAGCTTTGTGTCTCAAGAAAATGTTATCTTGTATAATGTTCACCTGTATGGTATGTTTAAATTTGGTGGTTTTGATTGTCAACTAAGTCTCTAACTAAAAATTCAATGCATTTATTGAAAATATGAAAAACCTTTATTTAAGTTCAATAGGGTGGGGAATCTGAATCTGTAATATCTTTGTGGTAGGATAAACGTTTTATTGTAGTTGAAGTATGTTATGTTATG

Coding sequence (CDS)

ATGGCCGGCGATGAGCCTACGACTACGTCCTCCACCGCCGCCGTCTCTTCCTCCGTCGCCGAGTCCATCCTCTCGCCTCCACCGCAAGATCCCGTCGGATCACCCAGTCGCGATGTGACGGAGATTCAATCATTGATATCCGAAGGCGATCATGACCAGGGACCCAGGGAGAACCACGATCACGGTCACGAACACGCAGTTAGAGCCGCTGTTCTCCCGGAGGATCTGAAACACAGGATCGTTAAGCAGGTAACTCTACCGCCTCTGCCCATCCCCTCTTCGAATTGGACCTTGAATGCTTCGCTAGGTTTTGCCTGCCTTTCTATAATTCCGAAGAGTGTTTTAGAGTATGGCATCGTTGTCTTTATGATTGGTCTAAATATCTTCGCAGTTCCAATAGCTATTATTGCTGCCTTCAAGAGAATGAAAAAACTTACTCAAGATCATTCATTTATTACTGCTGCCCTGAGGGAATCCTCTGTTCTTGTCGTAAGTTCTAATGGGAAGAAAGTCAAGCGACTTCATCCTATTCCATTGCCTGAGACTAGGGATCCTAAGTTATTTACTATTTTGGTAGAAAATCTACCTGAGGATCATTCAGAGGAGAATATCAAACGAATTTTTGGAGCAGCTGGACGCATAAGAAGTGTCACCATTTGTGACCCACATGTGGTAGAGAAGTTGGGGAAAAGCAGCAAGGGTGATGTGCTGATCAGTAATAAGTTGCATGCTCTTGTGGAGTACGAGTCTCCGGAGGCTTCTGAGAGAGCTGTGGCTACTTTAAATGATGAACAAGATTGGAGAAATGGCATGCGGGTTAAGCCTCTCAAGCATCTGAGTAAGCATGGCCAGAGGAAACAACACTGGCGAGCACCTGATCCCGACAAAAACAACACTGGGAGAATAACTGATCAGAATGGTCCCGACAAAAACATCCCAGGGCGAATAACTGATCAGAATGGCGATGAAGAAATTCAGAACTCTGTAAATGAGCATCATGACGATGAGCCTGATGAGGAGGAGGGAGATCATCAACCCAAAGACAAACATGGACATAGAGGTCGAAATCAAGGACGAACTAGAAGACAAAAGTACAAGGGCGTCAATGGAATGGGTCATGGAACTACAACTTCTGCCCATCACATTGAACTTTCGAAACCACCCCCTGGCCCGAAAATGCCTGATGGAACTCGGGGGTTCACAATGGGGCGTGGGCGACCTCCAACCTCCAACCAAAGCACATAG

Protein sequence

MAGDEPTTTSSTAAVSSSVAESILSPPPQDPVGSPSRDVTEIQSLISEGDHDQGPRENHDHGHEHAVRAAVLPEDLKHRIVKQVTLPPLPIPSSNWTLNASLGFACLSIIPKSVLEYGIVVFMIGLNIFAVPIAIIAAFKRMKKLTQDHSFITAALRESSVLVVSSNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENIKRIFGAAGRIRSVTICDPHVVEKLGKSSKGDVLISNKLHALVEYESPEASERAVATLNDEQDWRNGMRVKPLKHLSKHGQRKQHWRAPDPDKNNTGRITDQNGPDKNIPGRITDQNGDEEIQNSVNEHHDDEPDEEEGDHQPKDKHGHRGRNQGRTRRQKYKGVNGMGHGTTTSAHHIELSKPPPGPKMPDGTRGFTMGRGRPPTSNQST

Homology

[Close]

BLAST of ClCG01G024560 vs. NCBI nr
Match: XP_038882123.1 (la-related protein 6A [Benincasa hispida])

HSP 1 Score: 650.6 bits (1677), Expect = 9.2e-183
Identity = 348/414 (84.06%), Postives = 361/414 (87.20%), Query Frame = 0


Query: 1   MAGDEPTTTSSTAAVSSSVAESILSPPPQDPVGSPSRDVTEIQSLISEGDHDQGPRENHD 60
           MAGDEP TTSS AAVSSSVAESILSPPP+DPVGSPSRDV E QSLISE DHDQGPRE+HD
Sbjct: 1   MAGDEPPTTSSNAAVSSSVAESILSPPPRDPVGSPSRDVPETQSLISEDDHDQGPRESHD 60

Query: 61  HGHEHAVRAAVLPEDLKHRIVKQVTLPPLPIPSSNWTLNASLGFACLSIIPKSVLEYGIV 120
           HGHE AV+ AVLPEDLK RIVKQV          N   +  L    L +I K+   +   
Sbjct: 61  HGHEPAVKPAVLPEDLKQRIVKQV---EYYFSDENLPTDKHL----LGLIKKNKEGF--- 120

Query: 121 VFMIGLNIFAVPIAIIAAFKRMKKLTQDHSFITAALRESSVLVVSSNGKKVKRLHPIPLP 180
                     VPIAIIAAFKRMKKLTQDHSFITAALRESSVLV+SSNGKKVKRLHPIPLP
Sbjct: 121 ----------VPIAIIAAFKRMKKLTQDHSFITAALRESSVLVISSNGKKVKRLHPIPLP 180

Query: 181 ETRDPKLFTILVENLPEDHSEENIKRIFGAAGRIRSVTICDPHVVEKLGKSSKGDVLISN 240
           ETRDPKLFTILVENLPEDHSEENIKRIFGAAGRIRS+TICDPHVVEKLGKSSKGDVLISN
Sbjct: 181 ETRDPKLFTILVENLPEDHSEENIKRIFGAAGRIRSITICDPHVVEKLGKSSKGDVLISN 240

Query: 241 KLHALVEYESPEASERAVATLNDEQDWRNGMRVKPLKHLSKHGQRKQHWRAPDPDKNNTG 300
           KLHALVEYE+ EASE+AVATLNDEQDWRNGMRVKPLKHLSKHGQRKQHWR PDPDKN+TG
Sbjct: 241 KLHALVEYETLEASEKAVATLNDEQDWRNGMRVKPLKHLSKHGQRKQHWRGPDPDKNSTG 300

Query: 301 RITDQNGPDKNIPGRITDQNGDEEIQNSVNEHHDDEPDEEEGDHQPKDKHGHRGRNQGRT 360
           RITDQ+GPDKNIPGR TDQNGDEEI N VNEHHDD PDEEEGDHQ KDKHGHRGRNQGRT
Sbjct: 301 RITDQSGPDKNIPGRTTDQNGDEEIHN-VNEHHDDVPDEEEGDHQHKDKHGHRGRNQGRT 360

Query: 361 RRQKYKGVNGMGHGTTTSAHHIELSKPPPGPKMPDGTRGFTMGRGRPPTSNQST 415
           RRQKYKGVNGMGHGTTTSAHHIELSKPPPGPKMPDGTRGFTMGRGRPPTSNQ T
Sbjct: 361 RRQKYKGVNGMGHGTTTSAHHIELSKPPPGPKMPDGTRGFTMGRGRPPTSNQGT 393

[Close]

BLAST of ClCG01G024560 vs. NCBI nr
Match: XP_008439642.1 (PREDICTED: la-related protein 6A [Cucumis melo])

HSP 1 Score: 621.7 bits (1602), Expect = 4.6e-174
Identity = 333/415 (80.24%), Postives = 352/415 (84.82%), Query Frame = 0


Query: 1   MAGDEPTTTSSTAAVSSSVAESILSPPPQDPVGSPSRDVTEIQSLISEGDHDQGPRENHD 60
           MAGDEP TTSSTAAVSS VA+SILSPPPQDPVGSPSRDV EIQSLISE DHDQG REN D
Sbjct: 1   MAGDEPPTTSSTAAVSSPVADSILSPPPQDPVGSPSRDVPEIQSLISEDDHDQGSRENRD 60

Query: 61  HGHEHAVRAAVLPEDLKHRIVKQVT--LPPLPIPSSNWTLNASLGFACLSIIPKSVLEYG 120
            GHE AV+AAVLPEDLK RIVKQV        +PS  +          L +I K+   Y 
Sbjct: 61  QGHEPAVKAAVLPEDLKQRIVKQVEYYFSDENLPSDKY---------LLGLIKKNKEGY- 120

Query: 121 IVVFMIGLNIFAVPIAIIAAFKRMKKLTQDHSFITAALRESSVLVVSSNGKKVKRLHPIP 180
                       VPIAIIA+FKRMKKLT D SFITAALRESSVLVVSSNGKKVKRLHPI 
Sbjct: 121 ------------VPIAIIASFKRMKKLTHDRSFITAALRESSVLVVSSNGKKVKRLHPIS 180

Query: 181 LPETRDPKLFTILVENLPEDHSEENIKRIFGAAGRIRSVTICDPHVVEKLGKSSKGDVLI 240
           LPETRD KLFTILVENLPEDHSEENIKRIFG AGRIRS+TICDPHVV+KLGKS+K DVLI
Sbjct: 181 LPETRDSKLFTILVENLPEDHSEENIKRIFGVAGRIRSITICDPHVVDKLGKSNKSDVLI 240

Query: 241 SNKLHALVEYESPEASERAVATLNDEQDWRNGMRVKPLKHLSKHGQRKQHWRAPDPDKNN 300
           SNKLHALVEYE+ EASE+AVATLNDEQDWRNGMRVKPLKH+SKHGQRKQHWR P+PDKN+
Sbjct: 241 SNKLHALVEYETLEASEKAVATLNDEQDWRNGMRVKPLKHMSKHGQRKQHWRGPEPDKNS 300

Query: 301 TGRITDQNGPDKNIPGRITDQNGDEEIQNSVNEHHDDEPDEEEGDHQPKDKHGHRGRNQG 360
           +GRI DQNGP+KNIP R+TDQNGDEEI N VNEHHD  PDEEEGDHQ KDKHGHRG+NQG
Sbjct: 301 SGRIADQNGPNKNIPVRVTDQNGDEEIPNVVNEHHDGVPDEEEGDHQHKDKHGHRGQNQG 360

Query: 361 RTRRQKYKGVNGMGHGTTTSAHHIELSKPPPGPKMPDGTRGFTMGRGRPPTSNQS 414
           RTRRQKYKGVNGMGHGTTTS HHIELSKPPPGPKMPDGTRGFTMGRGRPPTSNQS
Sbjct: 361 RTRRQKYKGVNGMGHGTTTSTHHIELSKPPPGPKMPDGTRGFTMGRGRPPTSNQS 393

[Close]

BLAST of ClCG01G024560 vs. NCBI nr
Match: TYK13277.1 (la-related protein 6A [Cucumis melo var. makuwa])

HSP 1 Score: 617.5 bits (1591), Expect = 8.6e-173
Identity = 330/413 (79.90%), Postives = 350/413 (84.75%), Query Frame = 0


Query: 1   MAGDEPTTTSSTAAVSSSVAESILSPPPQDPVGSPSRDVTEIQSLISEGDHDQGPRENHD 60
           MAGDEP TTSSTAAVSS VA+SILSPPPQDPVGSPSRDV EIQSLIS+ DHDQG REN D
Sbjct: 1   MAGDEPPTTSSTAAVSSPVADSILSPPPQDPVGSPSRDVPEIQSLISKDDHDQGSRENRD 60

Query: 61  HGHEHAVRAAVLPEDLKHRIVKQVTLPPLPIPSSNWTLNASLGFACLSIIPKSVLEYGIV 120
            GHE A +AAVLPEDLK RIV +       +PS  +          L +I K+   Y   
Sbjct: 61  QGHEPAAKAAVLPEDLKQRIV-EYYFSDENLPSDKY---------LLGLIKKNKEGY--- 120

Query: 121 VFMIGLNIFAVPIAIIAAFKRMKKLTQDHSFITAALRESSVLVVSSNGKKVKRLHPIPLP 180
                     VPIAIIA+FKRMKKLT D SFITAALRESSVLVVSSNGKKVKRLHPI LP
Sbjct: 121 ----------VPIAIIASFKRMKKLTHDRSFITAALRESSVLVVSSNGKKVKRLHPISLP 180

Query: 181 ETRDPKLFTILVENLPEDHSEENIKRIFGAAGRIRSVTICDPHVVEKLGKSSKGDVLISN 240
           ETRD KLFTILVENLPEDHSEENIKRIFG AGRIRS+TICDPHVV+KLGKS+KGDVLISN
Sbjct: 181 ETRDSKLFTILVENLPEDHSEENIKRIFGVAGRIRSITICDPHVVDKLGKSNKGDVLISN 240

Query: 241 KLHALVEYESPEASERAVATLNDEQDWRNGMRVKPLKHLSKHGQRKQHWRAPDPDKNNTG 300
           KLHALVEYE+ EASE+AVATLNDEQDWRNGMRVKPLKH+SKHGQRKQHWR P+PDKN++G
Sbjct: 241 KLHALVEYETLEASEKAVATLNDEQDWRNGMRVKPLKHMSKHGQRKQHWRGPEPDKNSSG 300

Query: 301 RITDQNGPDKNIPGRITDQNGDEEIQNSVNEHHDDEPDEEEGDHQPKDKHGHRGRNQGRT 360
           RI DQNGPDKNIP R+TDQNGDEEI N VNEHHD  PDEEEGDHQ KDKHGHRG+NQGRT
Sbjct: 301 RIADQNGPDKNIPVRVTDQNGDEEIPNVVNEHHDGVPDEEEGDHQHKDKHGHRGQNQGRT 360

Query: 361 RRQKYKGVNGMGHGTTTSAHHIELSKPPPGPKMPDGTRGFTMGRGRPPTSNQS 414
           RRQKYKGVNGMGHGTTTS HHIELSKPPPGPKMPDGTRGFTMGRGRPPTSNQS
Sbjct: 361 RRQKYKGVNGMGHGTTTSTHHIELSKPPPGPKMPDGTRGFTMGRGRPPTSNQS 390

[Close]

BLAST of ClCG01G024560 vs. NCBI nr
Match: KAA0052548.1 (la-related protein 6A [Cucumis melo var. makuwa])

HSP 1 Score: 604.0 bits (1556), Expect = 9.8e-169
Identity = 330/437 (75.51%), Postives = 350/437 (80.09%), Query Frame = 0


Query: 1   MAGDEPTTTSSTAAVSSSVAESILSPPPQDPVGSPSRDVTEIQSLISEGDHDQGPRENHD 60
           MAGDEP TTSSTAAVSS VA+SILSPPPQDPVGSPSRDV EIQSLIS+ DHDQG REN D
Sbjct: 1   MAGDEPPTTSSTAAVSSPVADSILSPPPQDPVGSPSRDVPEIQSLISKDDHDQGSRENRD 60

Query: 61  HGHEHAVRAAVLPEDLKHRIVKQVTLPPLPIPSSNWTLNASLGFACLSIIPKSVLEYGIV 120
            GHE A +AAVLPEDLK RIV +       +PS  +          L +I K+   Y   
Sbjct: 61  QGHEPAAKAAVLPEDLKQRIV-EYYFSDENLPSDKY---------LLGLIKKNKEGY--- 120

Query: 121 VFMIGLNIFAVPIAIIAAFKRMKKLTQDHSFITAALRESSVLVVSSNGKKVKRLHPIPLP 180
                     VPIAIIA+FKRMKKLT D SFITAALRESSVLVVSSNGKKVKRLHPI LP
Sbjct: 121 ----------VPIAIIASFKRMKKLTHDRSFITAALRESSVLVVSSNGKKVKRLHPISLP 180

Query: 181 ETRDPKLFTILVENLPEDHSEENIKRIFGAAGRIRSVTICDPHVVEKLGKSSKGDVLISN 240
           ETRD KLFTILVENLPEDHSEENIKRIFG AGRIRS+TICDPHVV+KLGKS+KGDVLISN
Sbjct: 181 ETRDSKLFTILVENLPEDHSEENIKRIFGVAGRIRSITICDPHVVDKLGKSNKGDVLISN 240

Query: 241 KLHALVEYESPEASERAVATLNDEQDWRNGMRVKPLKHL--------------------- 300
           KLHALVEYE+ EASE+AVATLNDEQDWRNGMRVKPLKH+                     
Sbjct: 241 KLHALVEYETLEASEKAVATLNDEQDWRNGMRVKPLKHMVLYLISLAFFKLIVFYSQCSF 300

Query: 301 ---SKHGQRKQHWRAPDPDKNNTGRITDQNGPDKNIPGRITDQNGDEEIQNSVNEHHDDE 360
              SKHGQRKQHWR P+PDKN++GRI DQNGPDKNIP R+TDQNGDEEI N VNEHHD  
Sbjct: 301 QLQSKHGQRKQHWRGPEPDKNSSGRIADQNGPDKNIPVRVTDQNGDEEIPNVVNEHHDGV 360

Query: 361 PDEEEGDHQPKDKHGHRGRNQGRTRRQKYKGVNGMGHGTTTSAHHIELSKPPPGPKMPDG 414
           PDEEEGDHQ KDKHGHRG+NQGRTRRQKYKGVNGMGHGTTTS HHIELSKPPPGPKMPDG
Sbjct: 361 PDEEEGDHQHKDKHGHRGQNQGRTRRQKYKGVNGMGHGTTTSTHHIELSKPPPGPKMPDG 414

[Close]

BLAST of ClCG01G024560 vs. NCBI nr
Match: XP_004134576.1 (la-related protein 6A [Cucumis sativus] >KGN49390.1 hypothetical protein Csa_002950 [Cucumis sativus])

HSP 1 Score: 599.0 bits (1543), Expect = 3.2e-167
Identity = 323/416 (77.64%), Postives = 346/416 (83.17%), Query Frame = 0


Query: 1   MAGDEPTTTSSTAAVSSSVAESIL-SPPPQDPVGSPSRDVTEIQSLISEGDHDQGPRENH 60
           M+GDEP TT       SSVA+SIL SPPPQDPVGSPS DV +IQ LISE DHDQG RE+H
Sbjct: 1   MSGDEPPTT-------SSVADSILSSPPPQDPVGSPSLDVPDIQPLISEDDHDQGSRESH 60

Query: 61  DHGHEHAVRAAVLPEDLKHRIVKQVT--LPPLPIPSSNWTLNASLGFACLSIIPKSVLEY 120
           D GHE AVRAAVLPEDLK RIVKQV        +PS  +          L ++ K+   Y
Sbjct: 61  DQGHEPAVRAAVLPEDLKQRIVKQVEYYFSDENLPSDKY---------LLGLVKKNKEGY 120

Query: 121 GIVVFMIGLNIFAVPIAIIAAFKRMKKLTQDHSFITAALRESSVLVVSSNGKKVKRLHPI 180
                        VPIAIIA+FKRM+KLT D SFITAALRESSVLVVSSNGKKVKRLHPI
Sbjct: 121 -------------VPIAIIASFKRMRKLTHDRSFITAALRESSVLVVSSNGKKVKRLHPI 180

Query: 181 PLPETRDPKLFTILVENLPEDHSEENIKRIFGAAGRIRSVTICDPHVVEKLGKSSKGDVL 240
            LPETRDPKLFTILVENLPEDHSEEN+KRIFG AGRIRS+TICDPHVV+KLGKSSKGDVL
Sbjct: 181 SLPETRDPKLFTILVENLPEDHSEENMKRIFGVAGRIRSITICDPHVVDKLGKSSKGDVL 240

Query: 241 ISNKLHALVEYESPEASERAVATLNDEQDWRNGMRVKPLKHLSKHGQRKQHWRAPDPDKN 300
           ISNKLHALVEYE+ EASE+AVATLNDEQDWRNGMRVKPLK +SKHGQRKQHWR P+PDK 
Sbjct: 241 ISNKLHALVEYETLEASEKAVATLNDEQDWRNGMRVKPLKLMSKHGQRKQHWRGPEPDKT 300

Query: 301 NTGRITDQNGPDKNIPGRITDQNGDEEIQNSVNEHHDDEPDEEEGDHQPKDKHGHRGRNQ 360
           ++GRI DQNGPDKNIPGR+TDQNG+EEI N VNEHHDD PDEEEGDHQ KDKHGHRG+NQ
Sbjct: 301 SSGRIADQNGPDKNIPGRVTDQNGNEEIPNVVNEHHDDVPDEEEGDHQHKDKHGHRGQNQ 360

Query: 361 GRTRRQKYKGVNGMGHGTTTSAHHIELSKPPPGPKMPDGTRGFTMGRGRPPTSNQS 414
           GRTRRQKYKGVNGMGHGTTTS HHIELSKPPPGPKMPDGTRGFTMGRGRPPTS QS
Sbjct: 361 GRTRRQKYKGVNGMGHGTTTSTHHIELSKPPPGPKMPDGTRGFTMGRGRPPTSTQS 387

[Close]

BLAST of ClCG01G024560 vs. ExPASy Swiss-Prot
Match: Q94A38 (La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 9.5e-74
Identity = 194/435 (44.60%), Postives = 259/435 (59.54%), Query Frame = 0


Query: 6   PTTTSSTAAVSSSVAESILSPPPQDPVGSPSRD----VTEIQSLI---SEGDHDQGPREN 65
           P      A    S  +S L      PV   S D    V+EI +L     + DH++   E+
Sbjct: 22  PLHAPEDATADFSQPQSPLHEVDSFPVTESSDDVVVNVSEIPNLSPSDDDFDHERNSGED 81

Query: 66  HDHGH-EHAVR--AAVLP-EDLKHRIVKQVT--LPPLPIPSSNWTLNA----SLGFACLS 125
            D  H E+ V     V+P ++L  +I++QV        +P+  + LNA      GF    
Sbjct: 82  RDQDHGENPVETDGVVVPIDELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGF---- 141

Query: 126 IIPKSVLEYGIVVFMIGLNIFAVPIAIIAAFKRMKKLTQDHSFITAALRESSVLVVSSNG 185
                                 VPI+ IA F +MKKLT+DH+ I +AL+ESS LVVS++ 
Sbjct: 142 ----------------------VPISTIATFHKMKKLTRDHALIVSALKESSFLVVSADE 201

Query: 186 KKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENIKRIFGAAGRIRSVTICDPHVVEKL 245
           KKVKRL   PLPE RDPK+FT+LVENLPEDHS ENI+ IFG AG I+SV+ICDP+ VE+ 
Sbjct: 202 KKVKRLS--PLPEIRDPKIFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNAVEES 261

Query: 246 GKSSKGDVLISNKLHALVEYESPEASERAVATLNDEQDWRNGMRVKPLKHLS-KHGQRKQ 305
            K  K +  I  +LHA VEYE+ EA+E+A ATLN+EQDWRNG+RVK L+  + K  QR+ 
Sbjct: 262 EKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRVKLLEQAAGKFAQRRP 321

Query: 306 HWRAPDPDKNNTGRITDQNGPDKNIPGRITDQNGDEEIQNSVNEHHDDEPDEEEGDHQPK 365
             R  D +K+ TGR+ DQ G +KN   R        E QN    HH D P +++G +  K
Sbjct: 322 ARREVDKEKDTTGRVHDQTGGEKNKKTR--------EHQNH-RLHHSDNPADDDGGNHQK 381

Query: 366 DKHGHRGRNQGRTRRQKYKGVNGMGHGTTTSAHH-----IELSKPPPGPKMPDGTRGFTM 415
           DK+G++GR  G+ RRQ ++G NG+GHGT +S+ H     +E+SK PPGP+MPDGTRGFTM
Sbjct: 382 DKNGNKGRVVGQGRRQNHQGGNGIGHGTASSSSHPNYHPVEVSKRPPGPRMPDGTRGFTM 419

[Close]

BLAST of ClCG01G024560 vs. ExPASy Swiss-Prot
Match: Q9LHL3 (La-related protein 6C OS=Arabidopsis thaliana OX=3702 GN=LARP6C PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 9.6e-34
Identity = 106/293 (36.18%), Postives = 154/293 (52.56%), Query Frame = 0


Query: 131 VPIAIIAAFKRMKKLTQDHSFITAALRESSVLVVSSNGKKVKRLHPIPLPETRDPKLFTI 190
           VP++ IA+ K++K LT +H  ++ ALR SS LVVS +GKKVKR       +  + +  T+
Sbjct: 179 VPVSYIASTKKIKALTSNHHLVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTV 238

Query: 191 LVENLPEDHSEENIKRIFGAAGRIRSVTICDPHVVEKLGKSSKGDVLISNKLHALVEYES 250
           + ENLP+DHS +N+++IFG  G ++++ IC  H  E      KGD L+SNK+HAL+EY++
Sbjct: 239 VAENLPDDHSYQNLEKIFGVVGNVKAIRIC--HPPESNSSRPKGDFLMSNKIHALIEYDN 298

Query: 251 PEASERAVATLNDEQDWRNGMRVKPLKHLSKHGQRKQHWRAPDPDKNNTGRITDQNGPDK 310
              +++AV  LNDE++WR G+RV+ L   S     K         +N  G + D   P  
Sbjct: 299 TVIADKAVEKLNDERNWRKGLRVRLLLRCSPKSVLKNR-------RNFDGILIDDELPSY 358

Query: 311 NIPGRITDQNGDEEIQNSVNEHHDDEPDEEEGDHQPKDKHGHRGRNQGRTRRQKYKGVNG 370
                       E  ++S   H  +   + +GD         +GR +GR R  +   V G
Sbjct: 359 ------------ESGEDSPRLHLTESQLDNDGDDNNVGGLWGKGRGKGRGRSPRSYAVGG 418

Query: 371 MGH----------GTTTSAHHIELSKP---PPGPKMPDGTRGFTMGRGRPPTS 411
            G           G  +   H E S P     GP+MPDGTRGFTMGRG+P  S
Sbjct: 419 GGRSFGIGLGVSLGIPSLGSH-ESSSPKTATKGPRMPDGTRGFTMGRGKPSIS 449

[Close]

BLAST of ClCG01G024560 vs. ExPASy Swiss-Prot
Match: O80567 (La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2)

HSP 1 Score: 125.9 bits (315), Expect = 1.0e-27
Identity = 98/317 (30.91%), Postives = 160/317 (50.47%), Query Frame = 0


Query: 131 VPIAIIAAFKRMKKLTQDHSFITAALRESSVLVVSSNGKKVKRLHPIPLPETRDPKLFTI 190
           VPI ++A+FK++K +  ++S + A L+ S+ L VS +GKKV+R+ PI      + +   I
Sbjct: 228 VPIHVVASFKKIKAVINNNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRII 287

Query: 191 LVENLPEDHSEENIKRIFGAAGRIRSVTICDPH-----VVEKLGKSSKGD-VLISNKLHA 250
           + ENLPEDH  +N+ +IF   G ++++  C P             ++K D  L SNK+HA
Sbjct: 288 VAENLPEDHCYQNLMKIFSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHA 347

Query: 251 LVEYESPEASERAVATLNDEQDWRNGMRVK-PLKHLSKHGQRKQHWRAPDPDKNNTGRIT 310
            VEYE  E +ERAV  L++  +WR+G++V+  LKH +K  ++ Q       D +      
Sbjct: 348 FVEYEIVELAERAVTELSEAGNWRSGLKVRLMLKHQTKEPKQGQGRGRKGHDAD-----V 407

Query: 311 DQNGPDKNIPGRITDQNGDEEIQNSVNEHHDDEP-DEEEGDHQP--KDKHGHRGRNQGRT 370
           +    D     +   +   ++     + H  ++P  E++G+ +   + K  +RGR +GR 
Sbjct: 408 EHEEDDATTSEQQPIEKQSDDCSGEWDTHMQEQPIGEDQGNEKAAGQRKGRNRGRGKGRG 467

Query: 371 RRQKYKGV------------NGMGHGTTTSAHHIEL------------------SKPPPG 408
           R Q ++              N  G G     HH ++                   + PPG
Sbjct: 468 RGQPHQNQNQNNNHSHNQNHNHNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGKQQPPG 527

[Close]

BLAST of ClCG01G024560 vs. ExPASy Swiss-Prot
Match: Q05CL8 (La-related protein 7 OS=Mus musculus OX=10090 GN=Larp7 PE=1 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 9.7e-10
Identity = 44/133 (33.08%), Postives = 73/133 (54.89%), Query Frame = 0


Query: 131 VPIAIIAAFKRMKKLTQDHSFITAALRESSVLVVSSNGKKVKRLHPIPLPETRDPKLFTI 190
           V I+++ +F +MKKLT D   I  AL+ SSV+ +   G +++R  P+     +D +  T+
Sbjct: 63  VDISLLVSFNKMKKLTTDGKLIARALKSSSVVELDLEGTRIRRKKPLG-ERPKDEEERTV 122

Query: 191 LVENLPEDHSEENIKRIFGAAGRIRSVTICDPHVVEKLGKSSKGDVLISNKLHALVEYES 250
            VE LP++ +   I+R+FG  G +  ++I  PH        S GD     K  A VE+E+
Sbjct: 123 YVELLPKNVTHSWIERVFGKCGNVVYISI--PHY------KSTGD----PKGFAFVEFET 182

Query: 251 PEASERAVATLND 264
            E + +A+  LN+
Sbjct: 183 KEQAAKAIEFLNN 182

[Close]

BLAST of ClCG01G024560 vs. ExPASy Swiss-Prot
Match: Q5XI01 (La-related protein 7 OS=Rattus norvegicus OX=10116 GN=Larp7 PE=1 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 9.7e-10
Identity = 44/133 (33.08%), Postives = 73/133 (54.89%), Query Frame = 0


Query: 131 VPIAIIAAFKRMKKLTQDHSFITAALRESSVLVVSSNGKKVKRLHPIPLPETRDPKLFTI 190
           V I+++ +F +MKKLT D   I  AL+ SSV+ +   G +++R  P+     +D +  T+
Sbjct: 64  VDISLLVSFNKMKKLTTDGKLIARALKSSSVVELDLEGTRIRRKKPLG-ERPKDEEERTV 123

Query: 191 LVENLPEDHSEENIKRIFGAAGRIRSVTICDPHVVEKLGKSSKGDVLISNKLHALVEYES 250
            VE LP++ +   I+R+FG  G +  ++I  PH        S GD     K  A VE+E+
Sbjct: 124 YVELLPKNVTHSWIERVFGKCGNVVYISI--PHY------KSTGD----PKGFAFVEFET 183

Query: 251 PEASERAVATLND 264
            E + +A+  LN+
Sbjct: 184 KEQAAKAIEFLNN 183

[Close]

BLAST of ClCG01G024560 vs. ExPASy TrEMBL
Match: A0A1S3AYU2 (la-related protein 6A OS=Cucumis melo OX=3656 GN=LOC103484374 PE=4 SV=1)

HSP 1 Score: 621.7 bits (1602), Expect = 2.2e-174
Identity = 333/415 (80.24%), Postives = 352/415 (84.82%), Query Frame = 0


Query: 1   MAGDEPTTTSSTAAVSSSVAESILSPPPQDPVGSPSRDVTEIQSLISEGDHDQGPRENHD 60
           MAGDEP TTSSTAAVSS VA+SILSPPPQDPVGSPSRDV EIQSLISE DHDQG REN D
Sbjct: 1   MAGDEPPTTSSTAAVSSPVADSILSPPPQDPVGSPSRDVPEIQSLISEDDHDQGSRENRD 60

Query: 61  HGHEHAVRAAVLPEDLKHRIVKQVT--LPPLPIPSSNWTLNASLGFACLSIIPKSVLEYG 120
            GHE AV+AAVLPEDLK RIVKQV        +PS  +          L +I K+   Y 
Sbjct: 61  QGHEPAVKAAVLPEDLKQRIVKQVEYYFSDENLPSDKY---------LLGLIKKNKEGY- 120

Query: 121 IVVFMIGLNIFAVPIAIIAAFKRMKKLTQDHSFITAALRESSVLVVSSNGKKVKRLHPIP 180
                       VPIAIIA+FKRMKKLT D SFITAALRESSVLVVSSNGKKVKRLHPI 
Sbjct: 121 ------------VPIAIIASFKRMKKLTHDRSFITAALRESSVLVVSSNGKKVKRLHPIS 180

Query: 181 LPETRDPKLFTILVENLPEDHSEENIKRIFGAAGRIRSVTICDPHVVEKLGKSSKGDVLI 240
           LPETRD KLFTILVENLPEDHSEENIKRIFG AGRIRS+TICDPHVV+KLGKS+K DVLI
Sbjct: 181 LPETRDSKLFTILVENLPEDHSEENIKRIFGVAGRIRSITICDPHVVDKLGKSNKSDVLI 240

Query: 241 SNKLHALVEYESPEASERAVATLNDEQDWRNGMRVKPLKHLSKHGQRKQHWRAPDPDKNN 300
           SNKLHALVEYE+ EASE+AVATLNDEQDWRNGMRVKPLKH+SKHGQRKQHWR P+PDKN+
Sbjct: 241 SNKLHALVEYETLEASEKAVATLNDEQDWRNGMRVKPLKHMSKHGQRKQHWRGPEPDKNS 300

Query: 301 TGRITDQNGPDKNIPGRITDQNGDEEIQNSVNEHHDDEPDEEEGDHQPKDKHGHRGRNQG 360
           +GRI DQNGP+KNIP R+TDQNGDEEI N VNEHHD  PDEEEGDHQ KDKHGHRG+NQG
Sbjct: 301 SGRIADQNGPNKNIPVRVTDQNGDEEIPNVVNEHHDGVPDEEEGDHQHKDKHGHRGQNQG 360

Query: 361 RTRRQKYKGVNGMGHGTTTSAHHIELSKPPPGPKMPDGTRGFTMGRGRPPTSNQS 414
           RTRRQKYKGVNGMGHGTTTS HHIELSKPPPGPKMPDGTRGFTMGRGRPPTSNQS
Sbjct: 361 RTRRQKYKGVNGMGHGTTTSTHHIELSKPPPGPKMPDGTRGFTMGRGRPPTSNQS 393

[Close]

BLAST of ClCG01G024560 vs. ExPASy TrEMBL
Match: A0A5D3CMV4 (La-related protein 6A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008960 PE=4 SV=1)

HSP 1 Score: 617.5 bits (1591), Expect = 4.2e-173
Identity = 330/413 (79.90%), Postives = 350/413 (84.75%), Query Frame = 0


Query: 1   MAGDEPTTTSSTAAVSSSVAESILSPPPQDPVGSPSRDVTEIQSLISEGDHDQGPRENHD 60
           MAGDEP TTSSTAAVSS VA+SILSPPPQDPVGSPSRDV EIQSLIS+ DHDQG REN D
Sbjct: 1   MAGDEPPTTSSTAAVSSPVADSILSPPPQDPVGSPSRDVPEIQSLISKDDHDQGSRENRD 60

Query: 61  HGHEHAVRAAVLPEDLKHRIVKQVTLPPLPIPSSNWTLNASLGFACLSIIPKSVLEYGIV 120
            GHE A +AAVLPEDLK RIV +       +PS  +          L +I K+   Y   
Sbjct: 61  QGHEPAAKAAVLPEDLKQRIV-EYYFSDENLPSDKY---------LLGLIKKNKEGY--- 120

Query: 121 VFMIGLNIFAVPIAIIAAFKRMKKLTQDHSFITAALRESSVLVVSSNGKKVKRLHPIPLP 180
                     VPIAIIA+FKRMKKLT D SFITAALRESSVLVVSSNGKKVKRLHPI LP
Sbjct: 121 ----------VPIAIIASFKRMKKLTHDRSFITAALRESSVLVVSSNGKKVKRLHPISLP 180

Query: 181 ETRDPKLFTILVENLPEDHSEENIKRIFGAAGRIRSVTICDPHVVEKLGKSSKGDVLISN 240
           ETRD KLFTILVENLPEDHSEENIKRIFG AGRIRS+TICDPHVV+KLGKS+KGDVLISN
Sbjct: 181 ETRDSKLFTILVENLPEDHSEENIKRIFGVAGRIRSITICDPHVVDKLGKSNKGDVLISN 240

Query: 241 KLHALVEYESPEASERAVATLNDEQDWRNGMRVKPLKHLSKHGQRKQHWRAPDPDKNNTG 300
           KLHALVEYE+ EASE+AVATLNDEQDWRNGMRVKPLKH+SKHGQRKQHWR P+PDKN++G
Sbjct: 241 KLHALVEYETLEASEKAVATLNDEQDWRNGMRVKPLKHMSKHGQRKQHWRGPEPDKNSSG 300

Query: 301 RITDQNGPDKNIPGRITDQNGDEEIQNSVNEHHDDEPDEEEGDHQPKDKHGHRGRNQGRT 360
           RI DQNGPDKNIP R+TDQNGDEEI N VNEHHD  PDEEEGDHQ KDKHGHRG+NQGRT
Sbjct: 301 RIADQNGPDKNIPVRVTDQNGDEEIPNVVNEHHDGVPDEEEGDHQHKDKHGHRGQNQGRT 360

Query: 361 RRQKYKGVNGMGHGTTTSAHHIELSKPPPGPKMPDGTRGFTMGRGRPPTSNQS 414
           RRQKYKGVNGMGHGTTTS HHIELSKPPPGPKMPDGTRGFTMGRGRPPTSNQS
Sbjct: 361 RRQKYKGVNGMGHGTTTSTHHIELSKPPPGPKMPDGTRGFTMGRGRPPTSNQS 390

[Close]

BLAST of ClCG01G024560 vs. ExPASy TrEMBL
Match: A0A5A7UBI5 (La-related protein 6A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G001510 PE=4 SV=1)

HSP 1 Score: 604.0 bits (1556), Expect = 4.8e-169
Identity = 330/437 (75.51%), Postives = 350/437 (80.09%), Query Frame = 0


Query: 1   MAGDEPTTTSSTAAVSSSVAESILSPPPQDPVGSPSRDVTEIQSLISEGDHDQGPRENHD 60
           MAGDEP TTSSTAAVSS VA+SILSPPPQDPVGSPSRDV EIQSLIS+ DHDQG REN D
Sbjct: 1   MAGDEPPTTSSTAAVSSPVADSILSPPPQDPVGSPSRDVPEIQSLISKDDHDQGSRENRD 60

Query: 61  HGHEHAVRAAVLPEDLKHRIVKQVTLPPLPIPSSNWTLNASLGFACLSIIPKSVLEYGIV 120
            GHE A +AAVLPEDLK RIV +       +PS  +          L +I K+   Y   
Sbjct: 61  QGHEPAAKAAVLPEDLKQRIV-EYYFSDENLPSDKY---------LLGLIKKNKEGY--- 120

Query: 121 VFMIGLNIFAVPIAIIAAFKRMKKLTQDHSFITAALRESSVLVVSSNGKKVKRLHPIPLP 180
                     VPIAIIA+FKRMKKLT D SFITAALRESSVLVVSSNGKKVKRLHPI LP
Sbjct: 121 ----------VPIAIIASFKRMKKLTHDRSFITAALRESSVLVVSSNGKKVKRLHPISLP 180

Query: 181 ETRDPKLFTILVENLPEDHSEENIKRIFGAAGRIRSVTICDPHVVEKLGKSSKGDVLISN 240
           ETRD KLFTILVENLPEDHSEENIKRIFG AGRIRS+TICDPHVV+KLGKS+KGDVLISN
Sbjct: 181 ETRDSKLFTILVENLPEDHSEENIKRIFGVAGRIRSITICDPHVVDKLGKSNKGDVLISN 240

Query: 241 KLHALVEYESPEASERAVATLNDEQDWRNGMRVKPLKHL--------------------- 300
           KLHALVEYE+ EASE+AVATLNDEQDWRNGMRVKPLKH+                     
Sbjct: 241 KLHALVEYETLEASEKAVATLNDEQDWRNGMRVKPLKHMVLYLISLAFFKLIVFYSQCSF 300

Query: 301 ---SKHGQRKQHWRAPDPDKNNTGRITDQNGPDKNIPGRITDQNGDEEIQNSVNEHHDDE 360
              SKHGQRKQHWR P+PDKN++GRI DQNGPDKNIP R+TDQNGDEEI N VNEHHD  
Sbjct: 301 QLQSKHGQRKQHWRGPEPDKNSSGRIADQNGPDKNIPVRVTDQNGDEEIPNVVNEHHDGV 360

Query: 361 PDEEEGDHQPKDKHGHRGRNQGRTRRQKYKGVNGMGHGTTTSAHHIELSKPPPGPKMPDG 414
           PDEEEGDHQ KDKHGHRG+NQGRTRRQKYKGVNGMGHGTTTS HHIELSKPPPGPKMPDG
Sbjct: 361 PDEEEGDHQHKDKHGHRGQNQGRTRRQKYKGVNGMGHGTTTSTHHIELSKPPPGPKMPDG 414

[Close]

BLAST of ClCG01G024560 vs. ExPASy TrEMBL
Match: A0A0A0KI36 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G523320 PE=4 SV=1)

HSP 1 Score: 599.0 bits (1543), Expect = 1.5e-167
Identity = 323/416 (77.64%), Postives = 346/416 (83.17%), Query Frame = 0


Query: 1   MAGDEPTTTSSTAAVSSSVAESIL-SPPPQDPVGSPSRDVTEIQSLISEGDHDQGPRENH 60
           M+GDEP TT       SSVA+SIL SPPPQDPVGSPS DV +IQ LISE DHDQG RE+H
Sbjct: 1   MSGDEPPTT-------SSVADSILSSPPPQDPVGSPSLDVPDIQPLISEDDHDQGSRESH 60

Query: 61  DHGHEHAVRAAVLPEDLKHRIVKQVT--LPPLPIPSSNWTLNASLGFACLSIIPKSVLEY 120
           D GHE AVRAAVLPEDLK RIVKQV        +PS  +          L ++ K+   Y
Sbjct: 61  DQGHEPAVRAAVLPEDLKQRIVKQVEYYFSDENLPSDKY---------LLGLVKKNKEGY 120

Query: 121 GIVVFMIGLNIFAVPIAIIAAFKRMKKLTQDHSFITAALRESSVLVVSSNGKKVKRLHPI 180
                        VPIAIIA+FKRM+KLT D SFITAALRESSVLVVSSNGKKVKRLHPI
Sbjct: 121 -------------VPIAIIASFKRMRKLTHDRSFITAALRESSVLVVSSNGKKVKRLHPI 180

Query: 181 PLPETRDPKLFTILVENLPEDHSEENIKRIFGAAGRIRSVTICDPHVVEKLGKSSKGDVL 240
            LPETRDPKLFTILVENLPEDHSEEN+KRIFG AGRIRS+TICDPHVV+KLGKSSKGDVL
Sbjct: 181 SLPETRDPKLFTILVENLPEDHSEENMKRIFGVAGRIRSITICDPHVVDKLGKSSKGDVL 240

Query: 241 ISNKLHALVEYESPEASERAVATLNDEQDWRNGMRVKPLKHLSKHGQRKQHWRAPDPDKN 300
           ISNKLHALVEYE+ EASE+AVATLNDEQDWRNGMRVKPLK +SKHGQRKQHWR P+PDK 
Sbjct: 241 ISNKLHALVEYETLEASEKAVATLNDEQDWRNGMRVKPLKLMSKHGQRKQHWRGPEPDKT 300

Query: 301 NTGRITDQNGPDKNIPGRITDQNGDEEIQNSVNEHHDDEPDEEEGDHQPKDKHGHRGRNQ 360
           ++GRI DQNGPDKNIPGR+TDQNG+EEI N VNEHHDD PDEEEGDHQ KDKHGHRG+NQ
Sbjct: 301 SSGRIADQNGPDKNIPGRVTDQNGNEEIPNVVNEHHDDVPDEEEGDHQHKDKHGHRGQNQ 360

Query: 361 GRTRRQKYKGVNGMGHGTTTSAHHIELSKPPPGPKMPDGTRGFTMGRGRPPTSNQS 414
           GRTRRQKYKGVNGMGHGTTTS HHIELSKPPPGPKMPDGTRGFTMGRGRPPTS QS
Sbjct: 361 GRTRRQKYKGVNGMGHGTTTSTHHIELSKPPPGPKMPDGTRGFTMGRGRPPTSTQS 387

[Close]

BLAST of ClCG01G024560 vs. ExPASy TrEMBL
Match: A0A6J1IUP2 (la-related protein 6A-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111478735 PE=4 SV=1)

HSP 1 Score: 565.5 bits (1456), Expect = 1.9e-157
Identity = 312/411 (75.91%), Postives = 334/411 (81.27%), Query Frame = 0


Query: 1   MAGDEPTTTSSTAAVSSSVAESILSPPPQDPVGSPSRDVTEIQSLISEGDHDQGPRENHD 60
           MAGDEP  +S    +SSSV+ESI SPP QDPVGSPSRDV EIQSL SE DHDQG RE+HD
Sbjct: 1   MAGDEPPISSYPDVISSSVSESIPSPPRQDPVGSPSRDVPEIQSLASEDDHDQGLREHHD 60

Query: 61  HGHEHAVRAAVLPEDLKHRIVKQVTLPPLPIPSSNWTLNASLGFACLSIIPKSVLEYGIV 120
               HAV+AAVL EDLK RI+KQV          N   +  L    L +I K+   +   
Sbjct: 61  ----HAVKAAVLSEDLKRRIIKQV---EYYFSDENLPTDKHL----LGLIKKNKDGF--- 120

Query: 121 VFMIGLNIFAVPIAIIAAFKRMKKLTQDHSFITAALRESSVLVVSSNGKKVKRLHPIPLP 180
                     VPIAIIAAFKRMKKLTQDH+FITAALRESSVLVVSSNGKKVKRLHPIPLP
Sbjct: 121 ----------VPIAIIAAFKRMKKLTQDHTFITAALRESSVLVVSSNGKKVKRLHPIPLP 180

Query: 181 ETRDPKLFTILVENLPEDHSEENIKRIFGAAGRIRSVTICDPHVVEKLGKSSKGDVLISN 240
           ETRDPK+FTILVENLPEDHSEENIKRIFG AG IRS+T+ DPH+V+K+GKSSKGDVLISN
Sbjct: 181 ETRDPKVFTILVENLPEDHSEENIKRIFGVAGHIRSITVYDPHMVDKMGKSSKGDVLISN 240

Query: 241 KLHALVEYESPEASERAVATLNDEQDWRNGMRVKPLKHLSKHGQRKQHWRAPDPDKNNTG 300
           KLHALVEYES EA E+AVATLNDE DWRNGMRVKPLKHLSKHGQRKQHWR PDPDKN T 
Sbjct: 241 KLHALVEYESLEACEKAVATLNDEHDWRNGMRVKPLKHLSKHGQRKQHWRGPDPDKNFTW 300

Query: 301 RITDQNGPDKNIPGRITDQNGDEEIQNSVNEHHDDEPDEEEGDHQPKDKHGHRGRNQGRT 360
           R  DQNGPDKN  GRITDQNGDEEIQN + EHHDD PDEEE D+Q KDKHG+RGRNQGRT
Sbjct: 301 RTADQNGPDKNSSGRITDQNGDEEIQN-ITEHHDDVPDEEEVDYQHKDKHGNRGRNQGRT 360

Query: 361 RRQKYKGVNGMGHGTTTSAHHIELSKPPPGPKMPDGTRGFTMGRGRPPTSN 412
           RRQKYK VNG GHG TTSAHHIELSKPPPGPKMPDGTRGFTMGRGRP TS+
Sbjct: 361 RRQKYKSVNGTGHGITTSAHHIELSKPPPGPKMPDGTRGFTMGRGRPLTSS 386

[Close]

BLAST of ClCG01G024560 vs. TAIR 10
Match: AT5G46250.1 (RNA-binding protein )

HSP 1 Score: 278.9 bits (712), Expect = 6.8e-75
Identity = 194/435 (44.60%), Postives = 259/435 (59.54%), Query Frame = 0


Query: 6   PTTTSSTAAVSSSVAESILSPPPQDPVGSPSRD----VTEIQSLI---SEGDHDQGPREN 65
           P      A    S  +S L      PV   S D    V+EI +L     + DH++   E+
Sbjct: 22  PLHAPEDATADFSQPQSPLHEVDSFPVTESSDDVVVNVSEIPNLSPSDDDFDHERNSGED 81

Query: 66  HDHGH-EHAVR--AAVLP-EDLKHRIVKQVT--LPPLPIPSSNWTLNA----SLGFACLS 125
            D  H E+ V     V+P ++L  +I++QV        +P+  + LNA      GF    
Sbjct: 82  RDQDHGENPVETDGVVVPIDELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGF---- 141

Query: 126 IIPKSVLEYGIVVFMIGLNIFAVPIAIIAAFKRMKKLTQDHSFITAALRESSVLVVSSNG 185
                                 VPI+ IA F +MKKLT+DH+ I +AL+ESS LVVS++ 
Sbjct: 142 ----------------------VPISTIATFHKMKKLTRDHALIVSALKESSFLVVSADE 201

Query: 186 KKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENIKRIFGAAGRIRSVTICDPHVVEKL 245
           KKVKRL   PLPE RDPK+FT+LVENLPEDHS ENI+ IFG AG I+SV+ICDP+ VE+ 
Sbjct: 202 KKVKRLS--PLPEIRDPKIFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNAVEES 261

Query: 246 GKSSKGDVLISNKLHALVEYESPEASERAVATLNDEQDWRNGMRVKPLKHLS-KHGQRKQ 305
            K  K +  I  +LHA VEYE+ EA+E+A ATLN+EQDWRNG+RVK L+  + K  QR+ 
Sbjct: 262 EKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRVKLLEQAAGKFAQRRP 321

Query: 306 HWRAPDPDKNNTGRITDQNGPDKNIPGRITDQNGDEEIQNSVNEHHDDEPDEEEGDHQPK 365
             R  D +K+ TGR+ DQ G +KN   R        E QN    HH D P +++G +  K
Sbjct: 322 ARREVDKEKDTTGRVHDQTGGEKNKKTR--------EHQNH-RLHHSDNPADDDGGNHQK 381

Query: 366 DKHGHRGRNQGRTRRQKYKGVNGMGHGTTTSAHH-----IELSKPPPGPKMPDGTRGFTM 415
           DK+G++GR  G+ RRQ ++G NG+GHGT +S+ H     +E+SK PPGP+MPDGTRGFTM
Sbjct: 382 DKNGNKGRVVGQGRRQNHQGGNGIGHGTASSSSHPNYHPVEVSKRPPGPRMPDGTRGFTM 419

[Close]

BLAST of ClCG01G024560 vs. TAIR 10
Match: AT5G46250.2 (RNA-binding protein )

HSP 1 Score: 201.1 bits (510), Expect = 1.8e-51
Identity = 149/355 (41.97%), Postives = 198/355 (55.77%), Query Frame = 0


Query: 6   PTTTSSTAAVSSSVAESILSPPPQDPVGSPSRD----VTEIQSLI---SEGDHDQGPREN 65
           P      A    S  +S L      PV   S D    V+EI +L     + DH++   E+
Sbjct: 22  PLHAPEDATADFSQPQSPLHEVDSFPVTESSDDVVVNVSEIPNLSPSDDDFDHERNSGED 81

Query: 66  HDHGH-EHAVR--AAVLP-EDLKHRIVKQVT--LPPLPIPSSNWTLNA----SLGFACLS 125
            D  H E+ V     V+P ++L  +I++QV        +P+  + LNA      GF    
Sbjct: 82  RDQDHGENPVETDGVVVPIDELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGF---- 141

Query: 126 IIPKSVLEYGIVVFMIGLNIFAVPIAIIAAFKRMKKLTQDHSFITAALRESSVLVVSSNG 185
                                 VPI+ IA F +MKKLT+DH+ I +AL+ESS LVVS++ 
Sbjct: 142 ----------------------VPISTIATFHKMKKLTRDHALIVSALKESSFLVVSADE 201

Query: 186 KKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENIKRIFGAAGRIRSVTICDPHVVEKL 245
           KKVKRL   PLPE RDPK+FT+LVENLPEDHS ENI+ IFG AG I+SV+ICDP+ VE+ 
Sbjct: 202 KKVKRLS--PLPEIRDPKIFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNAVEES 261

Query: 246 GKSSKGDVLISNKLHALVEYESPEASERAVATLNDEQDWRNGMRVKPLKHLS-KHGQRKQ 305
            K  K +  I  +LHA VEYE+ EA+E+A ATLN+EQDWRNG+RVK L+  + K  QR+ 
Sbjct: 262 EKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRVKLLEQAAGKFAQRRP 321

Query: 306 HWRAPDPDKNNTGRITDQNGPDKNIPGRITDQNGDEEIQNSVNEHHDDEPDEEEG 343
             R  D +K+ TGR+ DQ G +KN   R        E QN    H D+  D+ +G
Sbjct: 322 ARREVDKEKDTTGRVHDQTGGEKNKKTR--------EHQNHRLHHSDNPADDVKG 340

[Close]

BLAST of ClCG01G024560 vs. TAIR 10
Match: AT5G46250.3 (RNA-binding protein )

HSP 1 Score: 201.1 bits (510), Expect = 1.8e-51
Identity = 149/355 (41.97%), Postives = 198/355 (55.77%), Query Frame = 0


Query: 6   PTTTSSTAAVSSSVAESILSPPPQDPVGSPSRD----VTEIQSLI---SEGDHDQGPREN 65
           P      A    S  +S L      PV   S D    V+EI +L     + DH++   E+
Sbjct: 22  PLHAPEDATADFSQPQSPLHEVDSFPVTESSDDVVVNVSEIPNLSPSDDDFDHERNSGED 81

Query: 66  HDHGH-EHAVR--AAVLP-EDLKHRIVKQVT--LPPLPIPSSNWTLNA----SLGFACLS 125
            D  H E+ V     V+P ++L  +I++QV        +P+  + LNA      GF    
Sbjct: 82  RDQDHGENPVETDGVVVPIDELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGF---- 141

Query: 126 IIPKSVLEYGIVVFMIGLNIFAVPIAIIAAFKRMKKLTQDHSFITAALRESSVLVVSSNG 185
                                 VPI+ IA F +MKKLT+DH+ I +AL+ESS LVVS++ 
Sbjct: 142 ----------------------VPISTIATFHKMKKLTRDHALIVSALKESSFLVVSADE 201

Query: 186 KKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENIKRIFGAAGRIRSVTICDPHVVEKL 245
           KKVKRL   PLPE RDPK+FT+LVENLPEDHS ENI+ IFG AG I+SV+ICDP+ VE+ 
Sbjct: 202 KKVKRLS--PLPEIRDPKIFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNAVEES 261

Query: 246 GKSSKGDVLISNKLHALVEYESPEASERAVATLNDEQDWRNGMRVKPLKHLS-KHGQRKQ 305
            K  K +  I  +LHA VEYE+ EA+E+AV TLN+EQDWRNG+RVK L+  + K  QR+ 
Sbjct: 262 EKGGKKENFIRTRLHAFVEYETVEAAEKAVTTLNNEQDWRNGLRVKLLEQAAGKFAQRRP 321

Query: 306 HWRAPDPDKNNTGRITDQNGPDKNIPGRITDQNGDEEIQNSVNEHHDDEPDEEEG 343
             R  D +K+ TGR+ DQ G +KN   R        E QN    H D+  D+ +G
Sbjct: 322 ARREVDKEKDTTGRVHDQTGGEKNKKTR--------EHQNHRLHHSDNPADDVKG 340

[Close]

BLAST of ClCG01G024560 vs. TAIR 10
Match: AT3G19090.1 (RNA-binding protein )

HSP 1 Score: 146.0 bits (367), Expect = 6.8e-35
Identity = 106/293 (36.18%), Postives = 154/293 (52.56%), Query Frame = 0


Query: 131 VPIAIIAAFKRMKKLTQDHSFITAALRESSVLVVSSNGKKVKRLHPIPLPETRDPKLFTI 190
           VP++ IA+ K++K LT +H  ++ ALR SS LVVS +GKKVKR       +  + +  T+
Sbjct: 179 VPVSYIASTKKIKALTSNHHLVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTV 238

Query: 191 LVENLPEDHSEENIKRIFGAAGRIRSVTICDPHVVEKLGKSSKGDVLISNKLHALVEYES 250
           + ENLP+DHS +N+++IFG  G ++++ IC  H  E      KGD L+SNK+HAL+EY++
Sbjct: 239 VAENLPDDHSYQNLEKIFGVVGNVKAIRIC--HPPESNSSRPKGDFLMSNKIHALIEYDN 298

Query: 251 PEASERAVATLNDEQDWRNGMRVKPLKHLSKHGQRKQHWRAPDPDKNNTGRITDQNGPDK 310
              +++AV  LNDE++WR G+RV+ L   S     K         +N  G + D   P  
Sbjct: 299 TVIADKAVEKLNDERNWRKGLRVRLLLRCSPKSVLKNR-------RNFDGILIDDELPSY 358

Query: 311 NIPGRITDQNGDEEIQNSVNEHHDDEPDEEEGDHQPKDKHGHRGRNQGRTRRQKYKGVNG 370
                       E  ++S   H  +   + +GD         +GR +GR R  +   V G
Sbjct: 359 ------------ESGEDSPRLHLTESQLDNDGDDNNVGGLWGKGRGKGRGRSPRSYAVGG 418

Query: 371 MGH----------GTTTSAHHIELSKP---PPGPKMPDGTRGFTMGRGRPPTS 411
            G           G  +   H E S P     GP+MPDGTRGFTMGRG+P  S
Sbjct: 419 GGRSFGIGLGVSLGIPSLGSH-ESSSPKTATKGPRMPDGTRGFTMGRGKPSIS 449

[Close]

BLAST of ClCG01G024560 vs. TAIR 10
Match: AT2G43970.1 (RNA-binding protein )

HSP 1 Score: 125.9 bits (315), Expect = 7.3e-29
Identity = 98/317 (30.91%), Postives = 160/317 (50.47%), Query Frame = 0


Query: 131 VPIAIIAAFKRMKKLTQDHSFITAALRESSVLVVSSNGKKVKRLHPIPLPETRDPKLFTI 190
           VPI ++A+FK++K +  ++S + A L+ S+ L VS +GKKV+R+ PI      + +   I
Sbjct: 228 VPIHVVASFKKIKAVINNNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRII 287

Query: 191 LVENLPEDHSEENIKRIFGAAGRIRSVTICDPH-----VVEKLGKSSKGD-VLISNKLHA 250
           + ENLPEDH  +N+ +IF   G ++++  C P             ++K D  L SNK+HA
Sbjct: 288 VAENLPEDHCYQNLMKIFSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHA 347

Query: 251 LVEYESPEASERAVATLNDEQDWRNGMRVK-PLKHLSKHGQRKQHWRAPDPDKNNTGRIT 310
            VEYE  E +ERAV  L++  +WR+G++V+  LKH +K  ++ Q       D +      
Sbjct: 348 FVEYEIVELAERAVTELSEAGNWRSGLKVRLMLKHQTKEPKQGQGRGRKGHDAD-----V 407

Query: 311 DQNGPDKNIPGRITDQNGDEEIQNSVNEHHDDEP-DEEEGDHQP--KDKHGHRGRNQGRT 370
           +    D     +   +   ++     + H  ++P  E++G+ +   + K  +RGR +GR 
Sbjct: 408 EHEEDDATTSEQQPIEKQSDDCSGEWDTHMQEQPIGEDQGNEKAAGQRKGRNRGRGKGRG 467

Query: 371 RRQKYKGV------------NGMGHGTTTSAHHIEL------------------SKPPPG 408
           R Q ++              N  G G     HH ++                   + PPG
Sbjct: 468 RGQPHQNQNQNNNHSHNQNHNHNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGKQQPPG 527

The following BLAST results are available for this feature:

BLAST of ClCG01G024560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882123.1	9.2e-183	84.06	la-related protein 6A [Benincasa hispida]	[more]
XP_008439642.1	4.6e-174	80.24	PREDICTED: la-related protein 6A [Cucumis melo]	[more]
TYK13277.1	8.6e-173	79.90	la-related protein 6A [Cucumis melo var. makuwa]	[more]
KAA0052548.1	9.8e-169	75.51	la-related protein 6A [Cucumis melo var. makuwa]	[more]
XP_004134576.1	3.2e-167	77.64	la-related protein 6A [Cucumis sativus] >KGN49390.1 hypothetical protein Csa_002...	[more]

BLAST of ClCG01G024560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94A38	9.5e-74	44.60	La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1	[more]
Q9LHL3	9.6e-34	36.18	La-related protein 6C OS=Arabidopsis thaliana OX=3702 GN=LARP6C PE=3 SV=1	[more]
O80567	1.0e-27	30.91	La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2	[more]
Q05CL8	9.7e-10	33.08	La-related protein 7 OS=Mus musculus OX=10090 GN=Larp7 PE=1 SV=2	[more]
Q5XI01	9.7e-10	33.08	La-related protein 7 OS=Rattus norvegicus OX=10116 GN=Larp7 PE=1 SV=2	[more]

BLAST of ClCG01G024560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AYU2	2.2e-174	80.24	la-related protein 6A OS=Cucumis melo OX=3656 GN=LOC103484374 PE=4 SV=1	[more]
A0A5D3CMV4	4.2e-173	79.90	La-related protein 6A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25...	[more]
A0A5A7UBI5	4.8e-169	75.51	La-related protein 6A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold12...	[more]
A0A0A0KI36	1.5e-167	77.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G523320 PE=4 SV=1	[more]
A0A6J1IUP2	1.9e-157	75.91	la-related protein 6A-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC11147873...	[more]

BLAST of ClCG01G024560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46250.1	6.8e-75	44.60	RNA-binding protein	[more]
AT5G46250.2	1.8e-51	41.97	RNA-binding protein	[more]
AT5G46250.3	1.8e-51	41.97	RNA-binding protein	[more]
AT3G19090.1	6.8e-35	36.18	RNA-binding protein	[more]
AT2G43970.1	7.3e-29	30.91	RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 189..274 e-value: 6.9E-4 score: 28.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 190..263 e-value: 2.4E-7 score: 30.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 188..274 score: 10.445465
IPR006630	La-type HTH domain	SMART	SM00715	la	coord: 113..174 e-value: 1.2E-4 score: 11.2
IPR006630	La-type HTH domain	PROSITE	PS50961	HTH_LA	coord: 86..181 score: 11.155298
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 180..286 e-value: 1.9E-11 score: 46.0
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 96..178 e-value: 5.5E-12 score: 47.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 275..414
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 298..313
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 325..350
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 131..409
None	No IPR available	PANTHER	PTHR22792:SF102	LA-RELATED PROTEIN 6A	coord: 131..409
IPR034878	Plant La-related protein, RNA recognition motif	CDD	cd12288	RRM_La_like_plant	coord: 188..276 e-value: 2.28333E-38 score: 131.871
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 130..183
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 175..292

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G024560.2	ClCG01G024560.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005844	polysome
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding