ClCG01G024430 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG01G024430
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr01: 37512149 .. 37513217 (+)
RNA-Seq ExpressionClCG01G024430
SyntenyClCG01G024430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAAATAGGTGTAGCTGAGGCCGTAGCCGAACGGATAGACGACGGGGCCATCGTAGAATTTGTAGGTTCTTCCTGGATATCCGAGGCTTTCCACCGGCCGAAGCGGCATTGATGTCATTGGAAGCTTGTTCACGTAGTCGGCTTCATACCATGTCACTGGTAACCTTCCTCCTGGAATGAGACAACAAAATCTTAGCCCTAATTTCATCTTAGCCCTAATTTCAATTGTCACCCTGCATTAATAAGTTAGGGCATATTTGATCTTTTTGACCTGGGTTAAATTTTCCGAATAGGATATCGGCGATGGCACGGCCACCTTCTTCGCCGGGATATCCAGCCCAGATAATGGCTTTGATGTTGGTATTATTCTTAGCGAAAGAGATGTCGATGCCCCCAGCGGACAAGATGACAAGAACAACTGGGCCCTTAGAGACGGTTGCAACTTGTTGGATGAGTTGAGTTTGGTAACCAGGAAGAAGAAGATCAAGTCTGTCCAAGCTCTCTGCTTCAATGGACAAATCAATTCCAGCAAATATCACAGTTGCATCAGAGTTCCTGGCTGCATCCATGGCTCCAAATATGAAGGTATCGTTTTTGCAAGCAATAGTATCACAACCCATTTGGTAGTTCACATTTGCATATTCTGATAGCCCATCAATTGGAGATTTCATTCTGCATGGCACTCCTGCAATAGAACAAAAACAGAACATTTAGACTATTACTAAATTCAAATGTTTTAAGTTAATGGGGTTGGGATGAATTTCATATTTGATTGAAGAAGATTGAGTTAGGGAAAAAAAGTGAGTTTTGGGCTTATAATTTGACCTGCATAGTTGCCAAGCATGACAGAAGTGGCATTGGCATGGGGTCCAACAACAGCTAGGGTTTTGATAGTAGAAGGATCAAGAGGCAAAGTGTCATTATCGTTCTTGAGTAAAACAATTCCTTGTCTAGCAGCTTCAGTGGCCAATTCAATGTGTTCATTAGAGCAAATATCTTGTTTTCCAAGCGATTTGAAACCAGGGCTTCCATCGAAGAATCCAAGTCTCATTAGAACAACGTAG

mRNA sequence

ATGGATGAAATAGGTGTAGCTGAGGCCGTAGCCGAACGGATAGACGACGGGGCCATCGTAGAATTTGTAGGCTTTCCACCGGCCGAAGCGGCATTGATGTCATTGGAAGCTTGTTCACGTAGTCGGCTTCATACCATGTCACTGGATATCGGCGATGGCACGGCCACCTTCTTCGCCGGGATATCCAGCCCAGATAATGGCTTTGATGTTGGTATTATTCTTAGCGAAAGAGATGTCGATGCCCCCAGCGGACAAGATGACAAGAACAACTGGGCCCTTAGAGACGGTTGCAACTTGTTGGATGAGTTGAGTTTGGTAACCAGGAAGAAGAAGATCAAGTCTGTCCAAGCTCTCTGCTTCAATGGACAAATCAATTCCAGCAAATATCACAGTTGCATCAGAGTTCCTGGCTGCATCCATGGCTCCAAATATGAAGGTATCTTGCCAAGCATGACAGAAGTGGCATTGGCATGGGGTCCAACAACAGCTAGGGTTTTGATAGTAGAAGGATCAAGAGGCAAAGTGTCATTATCGTTCTTGAGTAAAACAATTCCTTGTCTAGCAGCTTCAGTGGCCAATTCAATGTGTTCATTAGAGCAAATATCTTGTTTTCCAAGCGATTTGAAACCAGGGCTTCCATCGAAGAATCCAAGTCTCATTAGAACAACGTAG

Coding sequence (CDS)

ATGGATGAAATAGGTGTAGCTGAGGCCGTAGCCGAACGGATAGACGACGGGGCCATCGTAGAATTTGTAGGCTTTCCACCGGCCGAAGCGGCATTGATGTCATTGGAAGCTTGTTCACGTAGTCGGCTTCATACCATGTCACTGGATATCGGCGATGGCACGGCCACCTTCTTCGCCGGGATATCCAGCCCAGATAATGGCTTTGATGTTGGTATTATTCTTAGCGAAAGAGATGTCGATGCCCCCAGCGGACAAGATGACAAGAACAACTGGGCCCTTAGAGACGGTTGCAACTTGTTGGATGAGTTGAGTTTGGTAACCAGGAAGAAGAAGATCAAGTCTGTCCAAGCTCTCTGCTTCAATGGACAAATCAATTCCAGCAAATATCACAGTTGCATCAGAGTTCCTGGCTGCATCCATGGCTCCAAATATGAAGGTATCTTGCCAAGCATGACAGAAGTGGCATTGGCATGGGGTCCAACAACAGCTAGGGTTTTGATAGTAGAAGGATCAAGAGGCAAAGTGTCATTATCGTTCTTGAGTAAAACAATTCCTTGTCTAGCAGCTTCAGTGGCCAATTCAATGTGTTCATTAGAGCAAATATCTTGTTTTCCAAGCGATTTGAAACCAGGGCTTCCATCGAAGAATCCAAGTCTCATTAGAACAACGTAG

Protein sequence

MDEIGVAEAVAERIDDGAIVEFVGFPPAEAALMSLEACSRSRLHTMSLDIGDGTATFFAGISSPDNGFDVGIILSERDVDAPSGQDDKNNWALRDGCNLLDELSLVTRKKKIKSVQALCFNGQINSSKYHSCIRVPGCIHGSKYEGILPSMTEVALAWGPTTARVLIVEGSRGKVSLSFLSKTIPCLAASVANSMCSLEQISCFPSDLKPGLPSKNPSLIRTT
Homology
[Close]
BLAST of ClCG01G024430 vs. NCBI nr
Match: BAS71689.1 (Os01g0296450, partial [Oryza sativa Japonica Group])

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-09
Identity = 53/148 (35.81%), Postives = 76/148 (51.35%), Query Frame = 0 

Query: 3   EIGVAEAVAERIDD-GAIVEFVGFPPAEAALMSLEACSRSR----LHTMSL--------- 62
           E+GVAEAVAER++  GA VE VG  PA  A++ +      R     H + L         
Sbjct: 135 EVGVAEAVAERVEHVGAAVELVG--PAGVAVLGVRPQRHGRHRDLAHVLVLVPRQRQSSS 194

Query: 63  -------DIGDGTATFFAGISSPDNGFDVGIILSERDVDAPSG---QDDKNNWALRDGCN 122
                   +GDG A F AG++ PD+G D+G++L E DVDA  G   QDD+    L DG  
Sbjct: 195 WIVFSEEHVGDGRAAFLAGVAGPDDGADLGVVLGEGDVDAAGGHDHQDDRRRRGLGDG-- 254

Query: 123 LLDELSLVTRKKKIKSVQALCFNGQINS 127
            +D   L  R++++  V AL  +  + +
Sbjct: 255 -VDPAGLAPRQEEVFPVVALPLHAHVQA 277

[Close]
BLAST of ClCG01G024430 vs. NCBI nr
Match: KAB8114973.1 (hypothetical protein EE612_054844 [Oryza sativa] >BAT13634.1 Os11g0291475 [Oryza sativa Japonica Group])

HSP 1 Score: 55.8 bits (133), Expect = 5.4e-04
Identity = 38/131 (29.01%), Postives = 63/131 (48.09%), Query Frame = 0 

Query: 3   EIGVAEAVAERIDDGAIVEFVG-----------------FPPAEAALMSLEACSRSRLHT 62
           E GVAEAVAE +D  A+VE V                    P E   +       + +  
Sbjct: 129 EFGVAEAVAELVDGVALVEAVAPAGVAGGRVGAHPHVGHGDPGELLRVPCHRQPSAGVVV 188

Query: 63  MSLDIGDGTATFFAGISSPDNGFDVGIILSERDVDAPSGQDDKNNWALRDGCNLLDELSL 117
               +GDG     AG+  P +G D+G++L ERDV+ P+G++D+++   R   +  DE  L
Sbjct: 189 AEEHLGDGEPAGLAGVPRPQDGADLGVVLGERDVNRPAGEEDEDHRPPRRARHGGDEALL 248

[Close]
BLAST of ClCG01G024430 vs. ExPASy TrEMBL
Match: A0A0N7KCT2 (Os01g0296450 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0296450 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 9.2e-10
Identity = 53/148 (35.81%), Postives = 76/148 (51.35%), Query Frame = 0 

Query: 3   EIGVAEAVAERIDD-GAIVEFVGFPPAEAALMSLEACSRSR----LHTMSL--------- 62
           E+GVAEAVAER++  GA VE VG  PA  A++ +      R     H + L         
Sbjct: 135 EVGVAEAVAERVEHVGAAVELVG--PAGVAVLGVRPQRHGRHRDLAHVLVLVPRQRQSSS 194

Query: 63  -------DIGDGTATFFAGISSPDNGFDVGIILSERDVDAPSG---QDDKNNWALRDGCN 122
                   +GDG A F AG++ PD+G D+G++L E DVDA  G   QDD+    L DG  
Sbjct: 195 WIVFSEEHVGDGRAAFLAGVAGPDDGADLGVVLGEGDVDAAGGHDHQDDRRRRGLGDG-- 254

Query: 123 LLDELSLVTRKKKIKSVQALCFNGQINS 127
            +D   L  R++++  V AL  +  + +
Sbjct: 255 -VDPAGLAPRQEEVFPVVALPLHAHVQA 277

[Close]
BLAST of ClCG01G024430 vs. ExPASy TrEMBL
Match: A0A0N7KSS5 (Os11g0291475 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0291475 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.6e-04
Identity = 38/131 (29.01%), Postives = 63/131 (48.09%), Query Frame = 0 

Query: 3   EIGVAEAVAERIDDGAIVEFVG-----------------FPPAEAALMSLEACSRSRLHT 62
           E GVAEAVAE +D  A+VE V                    P E   +       + +  
Sbjct: 129 EFGVAEAVAELVDGVALVEAVAPAGVAGGRVGAHPHVGHGDPGELLRVPCHRQPSAGVVV 188

Query: 63  MSLDIGDGTATFFAGISSPDNGFDVGIILSERDVDAPSGQDDKNNWALRDGCNLLDELSL 117
               +GDG     AG+  P +G D+G++L ERDV+ P+G++D+++   R   +  DE  L
Sbjct: 189 AEEHLGDGEPAGLAGVPRPQDGADLGVVLGERDVNRPAGEEDEDHRPPRRARHGGDEALL 248

The following BLAST results are available for this feature:
BLAST of ClCG01G024430 vs. NCBI nr
Match NameE-valueIdentityDescription
BAS71689.11.9e-0935.81Os01g0296450, partial [Oryza sativa Japonica Group][more]
KAB8114973.15.4e-0429.01hypothetical protein EE612_054844 [Oryza sativa] >BAT13634.1 Os11g0291475 [Oryza... [more]
BLAST of ClCG01G024430 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG01G024430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0N7KCT29.2e-1035.81Os01g0296450 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os01... [more]
A0A0N7KSS52.6e-0429.01Os11g0291475 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0291475 PE... [more]
BLAST of ClCG01G024430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G024430.1ClCG01G024430.1mRNA