ClCG01G023280 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG01G023280
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr01: 36658878 .. 36660582 (+)
RNA-Seq ExpressionClCG01G023280
SyntenyClCG01G023280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAATCACACAAAGTATCTCCAACTGGCAGCAGAGGAGAATTCCGGCGAATCACATAGCAACTCCGCCGCTAATTAGCAGAGATTGGGAAGCCAATTCCATGGCGTCTGGTCGGAAAAATAACAAACAACATGCTGCAAAACACCCCAATCCCAATCGGCAAAGACGACAAAATCTCCTCAGCCTGATCCGACGGCGCCGGGTAAAAGCAGCTCACCACATTCTCATCAAACAGAGCAATGGCCGCAAAAACCAGAATCGACATGAAAGCGTGCAAGAAATCAATAAATCTCAGCCGATACTTAGCCGCGACGGCCGGCGGCAGGTCCACGGAGCCGTCGATGACCCACAAGCCTCTGAAAGTGGCGAACCCGTAGGAAACATTCCCCTGGCCGTCACTGAAACTGTCAGTGAAACTCTGAAGAAAACAGGAGAATCCACACAAAGCAACGAGGCCGGCGGTGAGGTAGCGGGAAATTGAATCACAATTCCCCTGATTGGTGAAAATTGGGGAAAGAAGTTGAAATGCAAGCACTGTTCCAGTAGGTAGAAGATTAGCCAAATTAGCAGTGCTTCGAAAGGTCTGGGAAATGGCTTTTTGGATGAGGGTTTTTTCATCTCTTGATGGGATGGCTGTCGTTTCGCGCAAAAGGGGTCGTTTGTGATCGTTTCGAGACTGGGTTTCTTCGTCGGCAGCTTTGATCTCCATGGCAGAGACTTTCAAATTGGAATGCAATCAGTTGGGAGTTGAGTAAGTTGATGGAAATTGGAGAGTTTGAAGTGTATTAATAATATGAAGGAAGTAGTGGGGGAAAAGGAAGGTTAGTGATGGCTTCAAAGCAATTGAGACGCGATATTAGAAAATTGGGGTTGTAGGCAGAAACAAAGAAAGAAAAGAAAGAAGGGAGATTTTGAAAACAGAAAGAAAGAAAAGAAAGATGGAGTAAGATTGGGGTAAAGGAGTTTTGTTGCTTCACTCGTGTGTTCATCTTGACATTTTATTTCAGTAGTGGAGTTGTATGGTTTTGTTAAAACTTGTAAGGAATATTGAGAATTGGGTTTATTAGGTAGGTAACAAACTCTTCTTACTTTTTTTTATTTTTTATTTTTTAAAAAATTGTTGTTCTATAAAACATGTTATCATGTACCAATCGACTTAAACACGATCTCCTGCAGGAAAGAAGAAAATGCCTTTTAATCTTTATAAAATAGTTAATTTTTTTTTTTTCTAATTCTTGCATTAACTATAATTATTTAATATCTGGATGTTTGAAAATTATGAAGACAAATTTTTATAAGACAGTAAAAACTAAAGCCGCTATTTCAATCTAGTCTCTTAATTTATTTTCTGTTTTAAGTTAAAAATATATTTTAGTTTTCATACTTCAATTTCTATGAATGTCTAGTCAAAGGTCAATGTCCTTTTTTTTCCTAAACAATTTAATCCCCACATTTCAGAAACGGTATATGAATCTAGTTGTAATTCAAATGAATAAATTGTAAAATAATTTAACTATCTTTGACTGTTGTTTCTATGTTTTTTGTTATTATTATTATTTATTATTATTTTATTTTTACAGAATAAAAAACGTCAATTTAGCATTGAAAAATGGAGTAAGTTGGGAGTTTTGGGAAAAGGAAGTTCAAAAGTAACAGAAGTTTACCTTGTAAAGACTACATTTGAAACTGAAAGTCTGAAATGA

mRNA sequence

ATGAGAATCACACAAAGTATCTCCAACTGGCAGCAGAGGAGAATTCCGGCGAATCACATAGCAACTCCGCCGCTAATTAGCAGAGATTGGGAAGCCAATTCCATGGCGTCTGGTCGGAAAAATAACAAACAACATGCTGCAAAACACCCCAATCCCAATCGGCAAAGACGACAAAATCTCCTCAGCCTGATCCGACGGCGCCGGGTAAAAGCAGCTCACCACATTCTCATCAAACAGAGCAATGGCCGCAAAAACCAGAATCGACATGAAAGCGTGCAAGAAATCAATAAATCTCAGCCGATACTTAGCCGCGACGGCCGGCGGCAGGTCCACGGAGCCGTCGATGACCCACAAGCCTCTGAAAGTGGCGAACCCGTAGGAAACATTCCCCTGGCCGTCACTGAAACTGTCAGTGAAACTCTGAAGAAAACAGGAGAATCCACACAAAGCAACGAGGCCGGCGGTGAGAATAAAAAACGTCAATTTAGCATTGAAAAATGGAGTAAGTTGGGAGTTTTGGGAAAAGGAAGTTCAAAAGTAACAGAAGTTTACCTTGTAAAGACTACATTTGAAACTGAAAGTCTGAAATGA

Coding sequence (CDS)

ATGAGAATCACACAAAGTATCTCCAACTGGCAGCAGAGGAGAATTCCGGCGAATCACATAGCAACTCCGCCGCTAATTAGCAGAGATTGGGAAGCCAATTCCATGGCGTCTGGTCGGAAAAATAACAAACAACATGCTGCAAAACACCCCAATCCCAATCGGCAAAGACGACAAAATCTCCTCAGCCTGATCCGACGGCGCCGGGTAAAAGCAGCTCACCACATTCTCATCAAACAGAGCAATGGCCGCAAAAACCAGAATCGACATGAAAGCGTGCAAGAAATCAATAAATCTCAGCCGATACTTAGCCGCGACGGCCGGCGGCAGGTCCACGGAGCCGTCGATGACCCACAAGCCTCTGAAAGTGGCGAACCCGTAGGAAACATTCCCCTGGCCGTCACTGAAACTGTCAGTGAAACTCTGAAGAAAACAGGAGAATCCACACAAAGCAACGAGGCCGGCGGTGAGAATAAAAAACGTCAATTTAGCATTGAAAAATGGAGTAAGTTGGGAGTTTTGGGAAAAGGAAGTTCAAAAGTAACAGAAGTTTACCTTGTAAAGACTACATTTGAAACTGAAAGTCTGAAATGA

Protein sequence

MRITQSISNWQQRRIPANHIATPPLISRDWEANSMASGRKNNKQHAAKHPNPNRQRRQNLLSLIRRRRVKAAHHILIKQSNGRKNQNRHESVQEINKSQPILSRDGRRQVHGAVDDPQASESGEPVGNIPLAVTETVSETLKKTGESTQSNEAGGENKKRQFSIEKWSKLGVLGKGSSKVTEVYLVKTTFETESLK
Homology
BLAST of ClCG01G023280 vs. NCBI nr
Match: PON60637.1 (hypothetical protein TorRG33x02_284420 [Trema orientale])

HSP 1 Score: 121.7 bits (304), Expect = 7.0e-24
Identity = 71/130 (54.62%), Postives = 91/130 (70.00%), Query Frame = 0

Query: 26  ISRDWEANSMASGRKNNKQHAAKHPNPNRQRRQNLLSLIRRRRVKAAHHILIKQSNGRKN 85
           I R+ EAN++A G KN+KQH     NPNRQRR+NLLSLIRRR +KA HHILIKQSNGRK+
Sbjct: 20  IDREREANTVALGGKNDKQHTTNDTNPNRQRRKNLLSLIRRRWIKATHHILIKQSNGRKH 79

Query: 86  QNRHESVQEINKSQPILSRDGRRQVHGAVDDPQASESGEPVGNIPLAVTETVSETLKKTG 145
           +  H+S+ EI+K   IL    RR+  GAVD PQ S  GE + +I + V +T+ E  +K G
Sbjct: 80  EYGHQSMHEIDKLHTILRSLLRRERGGAVDHPQPSPRGETIAHISVLVPKTIREAEQKRG 139

Query: 146 ESTQSNEAGG 156
            S QS++A G
Sbjct: 140 RSAQSHKARG 149

BLAST of ClCG01G023280 vs. NCBI nr
Match: CAG1854294.1 (unnamed protein product [Musa acuminata subsp. malaccensis])

HSP 1 Score: 82.8 bits (203), Expect = 3.6e-12
Identity = 56/158 (35.44%), Postives = 87/158 (55.06%), Query Frame = 0

Query: 4   TQSISNWQQRRIPANHIATPPLISRDWEANSMASGRKNNKQHAAKHPNPNRQRRQNLLSL 63
           T +I+   + R  A +I    L   +W+ NSMA G ++++Q AA++ NP+RQR ++L   
Sbjct: 34  TNNITETTEERANATNIGINLLRMSNWKPNSMADGGESDEQSAAENSNPDRQRCEDLKLD 93

Query: 64  IRRRRVKAAHHILIKQSNGRKNQNRHESVQEINKSQPILSRDGRRQVHGAVDDPQASESG 123
           +   RV A  H+L++Q + R++  R E ++E+ + Q +     RR    AVDDPQA E G
Sbjct: 94  VGGHRVVARDHVLVEQRHRREHHQRREGMEEVQRPQSVAHGQLRRYRLQAVDDPQAPERG 153

Query: 124 EPVGNIP-LAVTETVSETLKKTGESTQSNEAGGENKKR 161
             V + P   V E V E  ++ GE  +  EAGG    R
Sbjct: 154 HAVAHPPGCFVVEAVGEAEEEAGEGAEGQEAGGHEPAR 191

BLAST of ClCG01G023280 vs. NCBI nr
Match: KCW74522.1 (hypothetical protein EUGRSUZ_E03237 [Eucalyptus grandis])

HSP 1 Score: 74.7 bits (182), Expect = 9.8e-10
Identity = 40/90 (44.44%), Postives = 66/90 (73.33%), Query Frame = 0

Query: 30  WEANSMASGRKNNKQHAAKHPNPNRQRRQNLLSLIRRRRVKAAHHILIKQSNGRKNQNRH 89
           WE + +  GR++++QH+A   +P+RQRRQ+L SL+R RRV+AAHH+L+++ +  K+Q RH
Sbjct: 10  WETDPVPLGREHDEQHSADGSDPHRQRRQHLPSLVRWRRVEAAHHVLVEKRDRPKHQYRH 69

Query: 90  ESVQEINKSQPILSRDGRRQVHGAVDDPQA 120
           + V+++ + QP+L  + RR+    VD PQA
Sbjct: 70  DRVRKVYEPQPVLILELRRERVQPVDHPQA 99

BLAST of ClCG01G023280 vs. NCBI nr
Match: KAG6581329.1 (Receptor-like protein kinase HSL1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-09
Identity = 63/149 (42.28%), Postives = 79/149 (53.02%), Query Frame = 0

Query: 15  IPANHIATPPLISRDWEANSMASGRKNNKQ--HAAKHPNPNRQRRQNLLSLIRRRRVKAA 74
           +PAN+ ATPPL  RD EANSMASGRK NKQ  +  +   P ++ R          +  ++
Sbjct: 1   MPANNGATPPLSGRDGEANSMASGRKKNKQTCYKTRQSQPAKKSRSPAPDQTAPGK-NSS 60

Query: 75  HHILIKQSNGRKNQNRHESVQEINKSQPILSRDGRRQVHGAVDDP--------QASESGE 134
                 ++   KNQNRHESVQEINKSQPIL     RQ+ GAVD+P        Q++E G 
Sbjct: 61  PTFSSNRAMAEKNQNRHESVQEINKSQPILGSVRCRQLLGAVDNPHAFERESTQSNEGGG 120

Query: 135 PVGNIPLAVTETVSETLKK-TGESTQSNE 153
            V    +AV   V    KK  GE     E
Sbjct: 121 EVAGNGVAVALIVENWGKKLKGEDCTGGE 148

BLAST of ClCG01G023280 vs. NCBI nr
Match: PON97835.1 (hypothetical protein TorRG33x02_064250 [Trema orientale])

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-06
Identity = 45/122 (36.89%), Postives = 66/122 (54.10%), Query Frame = 0

Query: 35  MASGRKNNKQHAAKHPNPNRQRRQNLLSLIRRRRVKAAHHILIKQSNGRKNQNRHESVQE 94
           MA   + NK+ AA     +R R + LL L+ RRR +A  HILI++ + R+N+ R + V E
Sbjct: 1   MAPTWERNKEQAAHDAYCDRHRHEKLLCLLGRRRTEALDHILIERHHRRENEQRRQRVDE 60

Query: 95  INKSQPILS---RDGRRQVHGAVDDPQASESGEPVGNIPLAVTETVSETLKKTGESTQSN 154
           I+  +P+L        R    AVDDPQASE G+P+ ++   V   V E  ++ G      
Sbjct: 61  IHSPKPVLGGLLGRNDRVSRRAVDDPQASERGDPIADLAAVVPTAVGEAEEEAGGGATGE 120

BLAST of ClCG01G023280 vs. ExPASy TrEMBL
Match: A0A0A0KK92 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518140 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.5e-43
Identity = 97/122 (79.51%), Postives = 108/122 (88.52%), Query Frame = 0

Query: 35  MASGRKNNKQHAAKHPNPNRQRRQNLLSLIRRRRVKAAHHILIKQSNGRKNQNRHESVQE 94
           MASGRK+NKQH  KHPN NRQRRQNLL LIR RRVK  HHILIKQSN R+NQNRHES+QE
Sbjct: 1   MASGRKSNKQHTTKHPNCNRQRRQNLLRLIRWRRVKTVHHILIKQSNSRENQNRHESMQE 60

Query: 95  INKSQPILSRDGRRQVHGAVDDPQASESGEPVGNIPLAVTETVSETLKKTGESTQSNEAG 154
           INK QPI SRDGRR+ HGAVDDPQASESGE +GNIPL V+ET+SETLK+T +ST+SN+AG
Sbjct: 61  INKPQPITSRDGRRKFHGAVDDPQASESGESIGNIPLTVSETISETLKETRQSTESNKAG 120

Query: 155 GE 157
           GE
Sbjct: 121 GE 122

BLAST of ClCG01G023280 vs. ExPASy TrEMBL
Match: A0A2P5CHX1 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_284420 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.4e-24
Identity = 71/130 (54.62%), Postives = 91/130 (70.00%), Query Frame = 0

Query: 26  ISRDWEANSMASGRKNNKQHAAKHPNPNRQRRQNLLSLIRRRRVKAAHHILIKQSNGRKN 85
           I R+ EAN++A G KN+KQH     NPNRQRR+NLLSLIRRR +KA HHILIKQSNGRK+
Sbjct: 20  IDREREANTVALGGKNDKQHTTNDTNPNRQRRKNLLSLIRRRWIKATHHILIKQSNGRKH 79

Query: 86  QNRHESVQEINKSQPILSRDGRRQVHGAVDDPQASESGEPVGNIPLAVTETVSETLKKTG 145
           +  H+S+ EI+K   IL    RR+  GAVD PQ S  GE + +I + V +T+ E  +K G
Sbjct: 80  EYGHQSMHEIDKLHTILRSLLRRERGGAVDHPQPSPRGETIAHISVLVPKTIREAEQKRG 139

Query: 146 ESTQSNEAGG 156
            S QS++A G
Sbjct: 140 RSAQSHKARG 149

BLAST of ClCG01G023280 vs. ExPASy TrEMBL
Match: A0A059C851 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E03237 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.8e-10
Identity = 40/90 (44.44%), Postives = 66/90 (73.33%), Query Frame = 0

Query: 30  WEANSMASGRKNNKQHAAKHPNPNRQRRQNLLSLIRRRRVKAAHHILIKQSNGRKNQNRH 89
           WE + +  GR++++QH+A   +P+RQRRQ+L SL+R RRV+AAHH+L+++ +  K+Q RH
Sbjct: 10  WETDPVPLGREHDEQHSADGSDPHRQRRQHLPSLVRWRRVEAAHHVLVEKRDRPKHQYRH 69

Query: 90  ESVQEINKSQPILSRDGRRQVHGAVDDPQA 120
           + V+++ + QP+L  + RR+    VD PQA
Sbjct: 70  DRVRKVYEPQPVLILELRRERVQPVDHPQA 99

BLAST of ClCG01G023280 vs. ExPASy TrEMBL
Match: A0A2P5FJ60 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_064250 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.9e-07
Identity = 45/122 (36.89%), Postives = 66/122 (54.10%), Query Frame = 0

Query: 35  MASGRKNNKQHAAKHPNPNRQRRQNLLSLIRRRRVKAAHHILIKQSNGRKNQNRHESVQE 94
           MA   + NK+ AA     +R R + LL L+ RRR +A  HILI++ + R+N+ R + V E
Sbjct: 1   MAPTWERNKEQAAHDAYCDRHRHEKLLCLLGRRRTEALDHILIERHHRRENEQRRQRVDE 60

Query: 95  INKSQPILS---RDGRRQVHGAVDDPQASESGEPVGNIPLAVTETVSETLKKTGESTQSN 154
           I+  +P+L        R    AVDDPQASE G+P+ ++   V   V E  ++ G      
Sbjct: 61  IHSPKPVLGGLLGRNDRVSRRAVDDPQASERGDPIADLAAVVPTAVGEAEEEAGGGATGE 120

BLAST of ClCG01G023280 vs. ExPASy TrEMBL
Match: A0A2P5B6P1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_266830 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-05
Identity = 45/123 (36.59%), Postives = 68/123 (55.28%), Query Frame = 0

Query: 35  MASGRKNNKQHAAKHPNPNRQRRQNLLSLIRRRRVKAAHHILIKQSNGRKNQNRHESVQE 94
           MA   + NK+ AA     +R R + LL L+  +R +A  HILI++ + R+N+ R + V E
Sbjct: 1   MAPTWERNKEQAAHDAYCDRHRHKKLLRLLGWQRTEALDHILIERRHRRENEQRRQRVDE 60

Query: 95  INKSQPI----LSRDGRRQVHGAVDDPQASESGEPVGNIPLAVTETVSETLKKTGESTQS 154
           I+  +PI    L R+ R +   AVDDPQASE G+P+ ++   V   V E  ++ G     
Sbjct: 61  IHSPKPILGGLLGRNDRVR-RRAVDDPQASERGDPIADLATVVPTAVGEAEEEAGGGATG 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON60637.17.0e-2454.62hypothetical protein TorRG33x02_284420 [Trema orientale][more]
CAG1854294.13.6e-1235.44unnamed protein product [Musa acuminata subsp. malaccensis][more]
KCW74522.19.8e-1044.44hypothetical protein EUGRSUZ_E03237 [Eucalyptus grandis][more]
KAG6581329.11.3e-0942.28Receptor-like protein kinase HSL1, partial [Cucurbita argyrosperma subsp. sorori... [more]
PON97835.11.0e-0636.89hypothetical protein TorRG33x02_064250 [Trema orientale][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KK921.5e-4379.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518140 PE=4 SV=1[more]
A0A2P5CHX13.4e-2454.62Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_284420 PE=4 SV... [more]
A0A059C8514.8e-1044.44Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E03237 PE=4 SV... [more]
A0A2P5FJ604.9e-0736.89Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_064250 PE=4 SV... [more]
A0A2P5B6P11.2e-0536.59Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_266830 PE... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..128
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..161
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..157

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G023280.1ClCG01G023280.1mRNA