ClCG01G023240 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG01G023240
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionGlycogen phosphorylase 1-like
LocationCG_Chr01: 36627515 .. 36627979 (-)
RNA-Seq ExpressionClCG01G023240
SyntenyClCG01G023240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAGCACCATGGCCTCAAAAGCTTCAAGCCCTAACCCACATTCTACTCTGCCCCACCACCGCTCCGCCGCTCGCTTCTCAATACTTCATCGCCACCAAAATCCCCTGTTACCTCAATTGGGACTACCCCCCTCTCCTCTGCCCTAAATCTTCCATTTTCCCCTTTCTCTCTCTTCACCTCCAATGGGGTTTTTCTCTCTTCCTCAAAAGACTCTCCCGATTCGGCCTCCCCAAAACCTCCTGGCGATCCAAATGCCCTTATCAACTCCCTCCGCCTTTGATTCTCGCTAAAGGCGTCCCCGCTGCTCAATGGGACGACGAACAGAGGACAAACTACGTCAGAATGAGGCTCAAAAGAAAGCGTCTCGGCAGCGATGTTCATCCCTTAATCCCAATTATGATTCCCAATATGTTGCTGTTTTCTCTTCTCCTATGGAATCCATTTTCTTCCGACGATTGA

mRNA sequence

ATGGAAGAAGCACCATGGCCTCAAAAGCTTCAAGCCCTAACCCACATTCTACTCTGCCCCACCACCGCTCCGCCGCTCGCTTCTCAATACTTCATCGCCACCAAAATCCCCTGTTACCTCAATTGGGACTACCCCCCTCTCCTCTGCCCTAAATCTTCCATTTTCCCCTTTCTCTCTCTTCACCTCCAATGGGGTTTTTCTCTCTTCCTCAAAAGACTCTCCCGATTCGGCCTCCCCAAAACCTCCTGGCGATCCAAATGCCCTTATCAACTCCCTCCGCCTTTGATTCTCGCTAAAGGCGTCCCCGCTGCTCAATGGGACGACGAACAGAGGACAAACTACGTCAGAATGAGGCTCAAAAGAAAGCGTCTCGGCAGCGATGTTCATCCCTTAATCCCAATTATGATTCCCAATATGTTGCTGTTTTCTCTTCTCCTATGGAATCCATTTTCTTCCGACGATTGA

Coding sequence (CDS)

ATGGAAGAAGCACCATGGCCTCAAAAGCTTCAAGCCCTAACCCACATTCTACTCTGCCCCACCACCGCTCCGCCGCTCGCTTCTCAATACTTCATCGCCACCAAAATCCCCTGTTACCTCAATTGGGACTACCCCCCTCTCCTCTGCCCTAAATCTTCCATTTTCCCCTTTCTCTCTCTTCACCTCCAATGGGGTTTTTCTCTCTTCCTCAAAAGACTCTCCCGATTCGGCCTCCCCAAAACCTCCTGGCGATCCAAATGCCCTTATCAACTCCCTCCGCCTTTGATTCTCGCTAAAGGCGTCCCCGCTGCTCAATGGGACGACGAACAGAGGACAAACTACGTCAGAATGAGGCTCAAAAGAAAGCGTCTCGGCAGCGATGTTCATCCCTTAATCCCAATTATGATTCCCAATATGTTGCTGTTTTCTCTTCTCCTATGGAATCCATTTTCTTCCGACGATTGA

Protein sequence

MEEAPWPQKLQALTHILLCPTTAPPLASQYFIATKIPCYLNWDYPPLLCPKSSIFPFLSLHLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVPAAQWDDEQRTNYVRMRLKRKRLGSDVHPLIPIMIPNMLLFSLLLWNPFSSDD
Homology
BLAST of ClCG01G023240 vs. NCBI nr
Match: XP_004134687.2 (uncharacterized protein LOC101221431 [Cucumis sativus])

HSP 1 Score: 313.5 bits (802), Expect = 9.9e-82
Identity = 145/154 (94.16%), Postives = 149/154 (96.75%), Query Frame = 0

Query: 1   MEEAPWPQKLQALTHILLCPTTAPPLASQYFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60
           MEEAPWPQKLQALTHILLCPTTAPPLASQ+FIATKIPCYLNWDYPPLLCPKSSIFPFLSL
Sbjct: 12  MEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 71

Query: 61  HLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVPAAQWDDEQRTNYVRMRLK 120
           HLQWGFSLFLK+LSRFGLPKTSWRSKCPYQLPPPLILAKGV  AQWDDEQR NY RMRL+
Sbjct: 72  HLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYARMRLR 131

Query: 121 RKRLGSDVHPLIPIMIPNMLLFSLLLWNPFSSDD 155
           RKRLGSDVHPLIPIMIPNMLLF+LLLWNPFSS D
Sbjct: 132 RKRLGSDVHPLIPIMIPNMLLFTLLLWNPFSSTD 165

BLAST of ClCG01G023240 vs. NCBI nr
Match: XP_038883097.1 (uncharacterized protein LOC120074151 [Benincasa hispida])

HSP 1 Score: 310.1 bits (793), Expect = 1.1e-80
Identity = 145/154 (94.16%), Postives = 147/154 (95.45%), Query Frame = 0

Query: 1   MEEAPWPQKLQALTHILLCPTTAPPLASQYFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60
           MEE PWPQKLQALTHILLCPTTAPPLASQY IATKIPCYLNWDYPPLLCPKSSIFPFLSL
Sbjct: 11  MEETPWPQKLQALTHILLCPTTAPPLASQYLIATKIPCYLNWDYPPLLCPKSSIFPFLSL 70

Query: 61  HLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVPAAQWDDEQRTNYVRMRLK 120
           HLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGV +AQW DEQR NYVRMRL+
Sbjct: 71  HLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVHSAQWGDEQRKNYVRMRLR 130

Query: 121 RKRLGSDVHPLIPIMIPNMLLFSLLLWNPFSSDD 155
           RKRL SDVHPLIPIMIPNMLLFSLLLWNPFSS D
Sbjct: 131 RKRLVSDVHPLIPIMIPNMLLFSLLLWNPFSSSD 164

BLAST of ClCG01G023240 vs. NCBI nr
Match: KAA0052667.1 (uncharacterized protein E6C27_scaffold120G002770 [Cucumis melo var. makuwa] >TYK13158.1 uncharacterized protein E5676_scaffold255G007700 [Cucumis melo var. makuwa])

HSP 1 Score: 306.6 bits (784), Expect = 1.2e-79
Identity = 142/154 (92.21%), Postives = 146/154 (94.81%), Query Frame = 0

Query: 1   MEEAPWPQKLQALTHILLCPTTAPPLASQYFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60
           MEE PW QKLQALTHILLCP TAPPLASQ+FIATKIPCYLNWDYPPLLCPKSSIFPFLSL
Sbjct: 1   MEETPWSQKLQALTHILLCPDTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60

Query: 61  HLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVPAAQWDDEQRTNYVRMRLK 120
           HLQWGFSLFLK+LSRFGLPKTSWRSKCPYQLPPPLILAKGV  AQWDDEQR NY RMRL+
Sbjct: 61  HLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYARMRLR 120

Query: 121 RKRLGSDVHPLIPIMIPNMLLFSLLLWNPFSSDD 155
           RKRLGSDVHPLIPIMIPNMLLF+LLLWNPFSS D
Sbjct: 121 RKRLGSDVHPLIPIMIPNMLLFTLLLWNPFSSTD 154

BLAST of ClCG01G023240 vs. NCBI nr
Match: XP_008439813.1 (PREDICTED: uncharacterized protein LOC103484499 [Cucumis melo])

HSP 1 Score: 306.6 bits (784), Expect = 1.2e-79
Identity = 142/154 (92.21%), Postives = 146/154 (94.81%), Query Frame = 0

Query: 1   MEEAPWPQKLQALTHILLCPTTAPPLASQYFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60
           MEE PW QKLQALTHILLCP TAPPLASQ+FIATKIPCYLNWDYPPLLCPKSSIFPFLSL
Sbjct: 12  MEETPWSQKLQALTHILLCPDTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 71

Query: 61  HLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVPAAQWDDEQRTNYVRMRLK 120
           HLQWGFSLFLK+LSRFGLPKTSWRSKCPYQLPPPLILAKGV  AQWDDEQR NY RMRL+
Sbjct: 72  HLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYARMRLR 131

Query: 121 RKRLGSDVHPLIPIMIPNMLLFSLLLWNPFSSDD 155
           RKRLGSDVHPLIPIMIPNMLLF+LLLWNPFSS D
Sbjct: 132 RKRLGSDVHPLIPIMIPNMLLFTLLLWNPFSSTD 165

BLAST of ClCG01G023240 vs. NCBI nr
Match: KAG6594585.1 (hypothetical protein SDJN03_11138, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026555.1 hypothetical protein SDJN02_10557, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 298.9 bits (764), Expect = 2.5e-77
Identity = 138/154 (89.61%), Postives = 143/154 (92.86%), Query Frame = 0

Query: 1   MEEAPWPQKLQALTHILLCPTTAPPLASQYFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60
           MEE+PWPQKLQ LTHILLCPTTAPPLASQYF+ATKIPCYLNWDYPPLLCPK SIFPFLSL
Sbjct: 1   MEESPWPQKLQVLTHILLCPTTAPPLASQYFVATKIPCYLNWDYPPLLCPKPSIFPFLSL 60

Query: 61  HLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVPAAQWDDEQRTNYVRMRLK 120
           HLQWGFSLFLKRLSRF LPKTSWRSKCP+Q PPPLILAKGV  AQW DEQR  YVRMRL+
Sbjct: 61  HLQWGFSLFLKRLSRFALPKTSWRSKCPFQHPPPLILAKGVDPAQWGDEQRRTYVRMRLR 120

Query: 121 RKRLGSDVHPLIPIMIPNMLLFSLLLWNPFSSDD 155
           RKRLGSDVHPLIPI+IPNMLLFSLLLWNP SS D
Sbjct: 121 RKRLGSDVHPLIPIIIPNMLLFSLLLWNPLSSTD 154

BLAST of ClCG01G023240 vs. ExPASy TrEMBL
Match: A0A0A0KK88 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518100 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 4.8e-82
Identity = 145/154 (94.16%), Postives = 149/154 (96.75%), Query Frame = 0

Query: 1   MEEAPWPQKLQALTHILLCPTTAPPLASQYFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60
           MEEAPWPQKLQALTHILLCPTTAPPLASQ+FIATKIPCYLNWDYPPLLCPKSSIFPFLSL
Sbjct: 12  MEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 71

Query: 61  HLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVPAAQWDDEQRTNYVRMRLK 120
           HLQWGFSLFLK+LSRFGLPKTSWRSKCPYQLPPPLILAKGV  AQWDDEQR NY RMRL+
Sbjct: 72  HLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYARMRLR 131

Query: 121 RKRLGSDVHPLIPIMIPNMLLFSLLLWNPFSSDD 155
           RKRLGSDVHPLIPIMIPNMLLF+LLLWNPFSS D
Sbjct: 132 RKRLGSDVHPLIPIMIPNMLLFTLLLWNPFSSTD 165

BLAST of ClCG01G023240 vs. ExPASy TrEMBL
Match: A0A5A7UDV0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007700 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 5.8e-80
Identity = 142/154 (92.21%), Postives = 146/154 (94.81%), Query Frame = 0

Query: 1   MEEAPWPQKLQALTHILLCPTTAPPLASQYFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60
           MEE PW QKLQALTHILLCP TAPPLASQ+FIATKIPCYLNWDYPPLLCPKSSIFPFLSL
Sbjct: 1   MEETPWSQKLQALTHILLCPDTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60

Query: 61  HLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVPAAQWDDEQRTNYVRMRLK 120
           HLQWGFSLFLK+LSRFGLPKTSWRSKCPYQLPPPLILAKGV  AQWDDEQR NY RMRL+
Sbjct: 61  HLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYARMRLR 120

Query: 121 RKRLGSDVHPLIPIMIPNMLLFSLLLWNPFSSDD 155
           RKRLGSDVHPLIPIMIPNMLLF+LLLWNPFSS D
Sbjct: 121 RKRLGSDVHPLIPIMIPNMLLFTLLLWNPFSSTD 154

BLAST of ClCG01G023240 vs. ExPASy TrEMBL
Match: A0A1S3B097 (uncharacterized protein LOC103484499 OS=Cucumis melo OX=3656 GN=LOC103484499 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 5.8e-80
Identity = 142/154 (92.21%), Postives = 146/154 (94.81%), Query Frame = 0

Query: 1   MEEAPWPQKLQALTHILLCPTTAPPLASQYFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60
           MEE PW QKLQALTHILLCP TAPPLASQ+FIATKIPCYLNWDYPPLLCPKSSIFPFLSL
Sbjct: 12  MEETPWSQKLQALTHILLCPDTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 71

Query: 61  HLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVPAAQWDDEQRTNYVRMRLK 120
           HLQWGFSLFLK+LSRFGLPKTSWRSKCPYQLPPPLILAKGV  AQWDDEQR NY RMRL+
Sbjct: 72  HLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYARMRLR 131

Query: 121 RKRLGSDVHPLIPIMIPNMLLFSLLLWNPFSSDD 155
           RKRLGSDVHPLIPIMIPNMLLF+LLLWNPFSS D
Sbjct: 132 RKRLGSDVHPLIPIMIPNMLLFTLLLWNPFSSTD 165

BLAST of ClCG01G023240 vs. ExPASy TrEMBL
Match: A0A6J1EGM1 (uncharacterized protein LOC111433914 OS=Cucurbita moschata OX=3662 GN=LOC111433914 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 7.9e-77
Identity = 137/154 (88.96%), Postives = 142/154 (92.21%), Query Frame = 0

Query: 1   MEEAPWPQKLQALTHILLCPTTAPPLASQYFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60
           MEE+PWPQKLQ LTHILLCPTTAPPLASQYF+ATKIPCYLNWDYPPLLCPK SIFPF SL
Sbjct: 1   MEESPWPQKLQVLTHILLCPTTAPPLASQYFVATKIPCYLNWDYPPLLCPKPSIFPFPSL 60

Query: 61  HLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVPAAQWDDEQRTNYVRMRLK 120
           HLQWGFSLFLKRLSRF LPKTSWRSKCP+Q PPPLILAKGV  AQW DEQR  YVRMRL+
Sbjct: 61  HLQWGFSLFLKRLSRFALPKTSWRSKCPFQHPPPLILAKGVDPAQWGDEQRRTYVRMRLR 120

Query: 121 RKRLGSDVHPLIPIMIPNMLLFSLLLWNPFSSDD 155
           RKRLGSDVHPLIPI+IPNMLLFSLLLWNP SS D
Sbjct: 121 RKRLGSDVHPLIPIIIPNMLLFSLLLWNPLSSTD 154

BLAST of ClCG01G023240 vs. ExPASy TrEMBL
Match: A0A6J1IR68 (uncharacterized protein LOC111478635 OS=Cucurbita maxima OX=3661 GN=LOC111478635 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 4.8e-74
Identity = 133/152 (87.50%), Postives = 140/152 (92.11%), Query Frame = 0

Query: 1   MEEAPWPQKLQALTHILLCPTTAPPLASQYFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60
           ME+APW QKL+ALTHILLCPTTAPPLASQ+FIATKIPCYLNWDYPPLLC K SIFPF SL
Sbjct: 9   MEDAPWTQKLEALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKPSIFPFPSL 68

Query: 61  HLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVPAAQWDDEQRTNYVRMRLK 120
           HLQWGFSLFLKRLSR GLP TSWRSKCPYQLPPPL+LA+GV  AQWDDEQR NYVRMRL+
Sbjct: 69  HLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLARGVDGAQWDDEQRRNYVRMRLR 128

Query: 121 RKRLGSDVHPLIPIMIPNMLLFSLLLWNPFSS 153
           RKRLGSDV+PLIPIMIPNMLLF LLLW P SS
Sbjct: 129 RKRLGSDVNPLIPIMIPNMLLFCLLLWKPLSS 160

BLAST of ClCG01G023240 vs. TAIR 10
Match: AT2G33855.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 166.8 bits (421), Expect = 1.4e-41
Identity = 80/150 (53.33%), Postives = 102/150 (68.00%), Query Frame = 0

Query: 1   MEEAPWPQKLQALTHILLCPTTAPPLASQYFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60
           MEE  W Q++QA+THIL  PTT P L SQ+FI   IP Y++WDYPP+  P          
Sbjct: 1   MEETTWGQRIQAVTHILTNPTTKPSLYSQFFIGAIIPNYVSWDYPPVYSP---------T 60

Query: 61  HL-QWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVPAAQWDDEQRTNYVRMRL 120
           HL QW  S F KR+SRFGLP TSWRS  PY  PP  ++A GV   +W  E+R  Y R RL
Sbjct: 61  HLRQWWVSQFFKRVSRFGLPDTSWRSNSPYYQPPAAVMAVGVEEGKWGKEERREYARKRL 120

Query: 121 KRKRLGSDVHPLIPIMIPNMLLFSLLLWNP 150
           +RKRL ++V+P IP+++PN+LLF+LLLW+P
Sbjct: 121 RRKRLVNEVNPYIPLLVPNLLLFTLLLWDP 141

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004134687.29.9e-8294.16uncharacterized protein LOC101221431 [Cucumis sativus][more]
XP_038883097.11.1e-8094.16uncharacterized protein LOC120074151 [Benincasa hispida][more]
KAA0052667.11.2e-7992.21uncharacterized protein E6C27_scaffold120G002770 [Cucumis melo var. makuwa] >TYK... [more]
XP_008439813.11.2e-7992.21PREDICTED: uncharacterized protein LOC103484499 [Cucumis melo][more]
KAG6594585.12.5e-7789.61hypothetical protein SDJN03_11138, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KK884.8e-8294.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518100 PE=4 SV=1[more]
A0A5A7UDV05.8e-8092.21Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B0975.8e-8092.21uncharacterized protein LOC103484499 OS=Cucumis melo OX=3656 GN=LOC103484499 PE=... [more]
A0A6J1EGM17.9e-7788.96uncharacterized protein LOC111433914 OS=Cucurbita moschata OX=3662 GN=LOC1114339... [more]
A0A6J1IR684.8e-7487.50uncharacterized protein LOC111478635 OS=Cucurbita maxima OX=3661 GN=LOC111478635... [more]
Match NameE-valueIdentityDescription
AT2G33855.11.4e-4153.33unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR38364OSJNBA0022H21.9 PROTEINcoord: 3..152

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G023240.1ClCG01G023240.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane