ClCG01G022560 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G022560
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	F-box protein
Location	CG_Chr01: 36064847 .. 36066483 (-)
RNA-Seq Expression	ClCG01G022560
Synteny	ClCG01G022560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTGGGAAAGAAGAGCGGTTGTTTGAAATCGAAAAGCGTTGTCTCTGCTGCTGATAAAGGGCTTGATTTCGGAGTTGTGAGATATACGCGTGGTTTAGGAAGGAAACGCGTCGTCATTTCTTGCAATGAGGAAGATTCCTCTATCAATTTGAAGAGGCGCTGCAACGTGGTCAGTACGGCGGTGGACGCTGATAGGTCTCTGCTCGAGGCTCTGCCTCAGGAGATCCTGGTTAGTACTCTTCATAGAGATTGAGATCGCTTCGATTATTGTATCTTTCATATTTGCATATTAGTTTCCGTTTTCGATAATTGTTTCCGAATTGATTTTTCCCCTTTCCCCTCTCCATCAGATTAGGGTTCTCTGTGGCGTGGAACATGATGATTTGAAACAGCTAGTCCGGGTTTCGAAAACAATTAGTGAAGCGGTAAATATCACTCGAATCTCATTATTTGTTTCCTTTCATTTGATTCGACGATTCTTATCGATTTAGGGTTTCAATTGCATTTACAGACTTTGATTGCAAAAGAATGGCATTTCGCTTATAGCACTCCCTCGAAGGTCCGTACATTTCGCACCGCCATTGAATTAGATGATTCCAGTGATTTCGACGAGATTGAAGCTCCAAATGCTCCTCCCACAAGGCGATTCAGAACTCCATTAAACAGAAAGAAGCTCGCTGAGATATCTATAGCCCTATTCGCCGAAGAAGATCAGTGGCCAAAGAAAAAGTTAGCCATTGAGACAGAGATGTGAATTAATGAACCCGGAGGACTCTGTAAATACAACGTGTATTTATATTGTTGTAGAAACACGGTTGTGGTGGTAGGAAGAAGGAAGAAAGACGTAGTTAGGGATCTGAAATCTCAGATCTTGGTTGAAGAAGCTGTACATGTCAGAACATTCTCACTGACCAGTTCTTCAAATCTTTCATTGAAGATGAAGATGGGGGGTGGGTTAGAAATGCATCTCTTTTTTTTTTTGTACAGACAGACTGATAGGTAAATTCGTTTACAAGGGTAGCATTTTGGTTTAGTCCCTTCGAAATTCTCATAAACTGTACACTGTAGTATGTACTACTGCTCTCATTCATTCTCTGTCTAATAAGAACGAACCATGTTTTTCCTAGCAATGTTGTGTCACTATTTTTACAGTATAATGTTCTGCATTCATATGTATTGCTTGTTATGAATTATGATTCCGTTTGAAAAATTTTTCCATAATTGATAAATGGGATTTTTGGTTTCCCTTTTTGGTGTAGTATGTGATGGAATGATTTGCAACGTATGAGAAATTAAGTGGGGGAGCAGAGAGAATAGAAATTATTAGAAGCGTGGACTTTGACAACTGTTTCTTATGCTTTTTACTCGCCTAAAAGGAGTTTGGAATTTTCAATTATATGTGGAAATGTTTCTGTACAAGCTGGACTGATGAACTGGCGACCTCCAAACTTCGTCTCACTGGAGGTTTCAGTTTCTTTTTCATACTTCAAATAATCTACAAAAGAGGTAAGGAATTTGAACCAAAATGTTGTCAATGAGTTGTGGATTCATTCAGGGCTTAATTCTGAAACTGGGAAGCTCCATTTATCCAATTCCCCAGGACACTATTACAAGTTACTCAAGCTTGTTTAA

mRNA sequence

ATGGCGTTGGGAAAGAAGAGCGGTTGTTTGAAATCGAAAAGCGTTGTCTCTGCTGCTGATAAAGGGCTTGATTTCGGAGTTGTGAGATATACGCGTGGTTTAGGAAGGAAACGCGTCGTCATTTCTTGCAATGAGGAAGATTCCTCTATCAATTTGAAGAGGCGCTGCAACGTGGTCAGTACGGCGGTGGACGCTGATAGGTCTCTGCTCGAGGCTCTGCCTCAGGAGATCCTGATTAGGGTTCTCTGTGGCGTGGAACATGATGATTTGAAACAGCTAGTCCGGGTTTCGAAAACAATTAGTGAAGCGACTTTGATTGCAAAAGAATGGCATTTCGCTTATAGCACTCCCTCGAAGGTCCGTACATTTCGCACCGCCATTGAATTAGATGATTCCAGTGATTTCGACGAGATTGAAGCTCCAAATGCTCCTCCCACAAGGCGATTCAGAACTCCATTAAACAGAAAGAAGCTCGCTGAGATATCTATAGCCCTATTCGCCGAAGAAGATCAGTGGCCAAAGAAAAAAAACACGGTTGTGGTGGTAGGAAGAAGGAAGAAAGACGTAGTTAGGGATCTGAAATCTCAGATCTTGGTTGAAGAAGCTGTACATGTCAGAACATTCTCACTGACCAGTTCTTCAAATCTTTCATTGAAGATGAAGATGGGGGGGCTTAATTCTGAAACTGGGAAGCTCCATTTATCCAATTCCCCAGGACACTATTACAAGTTACTCAAGCTTGTTTAA

Coding sequence (CDS)

ATGGCGTTGGGAAAGAAGAGCGGTTGTTTGAAATCGAAAAGCGTTGTCTCTGCTGCTGATAAAGGGCTTGATTTCGGAGTTGTGAGATATACGCGTGGTTTAGGAAGGAAACGCGTCGTCATTTCTTGCAATGAGGAAGATTCCTCTATCAATTTGAAGAGGCGCTGCAACGTGGTCAGTACGGCGGTGGACGCTGATAGGTCTCTGCTCGAGGCTCTGCCTCAGGAGATCCTGATTAGGGTTCTCTGTGGCGTGGAACATGATGATTTGAAACAGCTAGTCCGGGTTTCGAAAACAATTAGTGAAGCGACTTTGATTGCAAAAGAATGGCATTTCGCTTATAGCACTCCCTCGAAGGTCCGTACATTTCGCACCGCCATTGAATTAGATGATTCCAGTGATTTCGACGAGATTGAAGCTCCAAATGCTCCTCCCACAAGGCGATTCAGAACTCCATTAAACAGAAAGAAGCTCGCTGAGATATCTATAGCCCTATTCGCCGAAGAAGATCAGTGGCCAAAGAAAAAAAACACGGTTGTGGTGGTAGGAAGAAGGAAGAAAGACGTAGTTAGGGATCTGAAATCTCAGATCTTGGTTGAAGAAGCTGTACATGTCAGAACATTCTCACTGACCAGTTCTTCAAATCTTTCATTGAAGATGAAGATGGGGGGGCTTAATTCTGAAACTGGGAAGCTCCATTTATCCAATTCCCCAGGACACTATTACAAGTTACTCAAGCTTGTTTAA

Protein sequence

MALGKKSGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSINLKRRCNVVSTAVDADRSLLEALPQEILIRVLCGVEHDDLKQLVRVSKTISEATLIAKEWHFAYSTPSKVRTFRTAIELDDSSDFDEIEAPNAPPTRRFRTPLNRKKLAEISIALFAEEDQWPKKKNTVVVVGRRKKDVVRDLKSQILVEEAVHVRTFSLTSSSNLSLKMKMGGLNSETGKLHLSNSPGHYYKLLKLV

Homology

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BLAST of ClCG01G022560 vs. NCBI nr
Match: XP_008439907.1 (PREDICTED: F-box protein At4g05010-like [Cucumis melo] >KAA0052721.1 F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 312.8 bits (800), Expect = 2.7e-81
Identity = 164/183 (89.62%), Postives = 173/183 (94.54%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSINL------KR 60
           MALGKK+GCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSI+L      KR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60

Query: 61  RCNVVSTAVDADRSLLEALPQEILIRVLCGVEHDDLKQLVRVSKTISEATLIAKEWHFAY 120
           RCNVVSTAV+ADRSLLEALPQEILIRVLCGVEHDDLKQL+RVSKTISEATLIAK+ HFAY
Sbjct: 61  RCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120

Query: 121 STPSKVRTFRTAIELDDSSDFDEIEAPNAPPTRRFRTPLNRKKLAEISIALFA-EEDQWP 177
           STPSKVR FRTAIEL+DSSDFDEIEAPNA PTRRFR+PLNRKKLAEIS+ALFA EED+WP
Sbjct: 121 STPSKVRAFRTAIELNDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP 180

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BLAST of ClCG01G022560 vs. NCBI nr
Match: TYK13104.1 (F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 312.8 bits (800), Expect = 2.7e-81
Identity = 164/183 (89.62%), Postives = 172/183 (93.99%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSINL------KR 60
           MALGKK+GCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSI+L      KR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60

Query: 61  RCNVVSTAVDADRSLLEALPQEILIRVLCGVEHDDLKQLVRVSKTISEATLIAKEWHFAY 120
            CNVVSTAV+ADRSLLEALPQEILIRVLCGVEHDDLKQL+RVSKTISEATLIAK+ HFAY
Sbjct: 61  HCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120

Query: 121 STPSKVRTFRTAIELDDSSDFDEIEAPNAPPTRRFRTPLNRKKLAEISIALFA-EEDQWP 177
           STPSKVR FRTAIELDDSSDFDEIEAPNA PTRRFR+PLNRKKLAEIS+ALFA EED+WP
Sbjct: 121 STPSKVRAFRTAIELDDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP 180

[Close]

BLAST of ClCG01G022560 vs. NCBI nr
Match: XP_004134730.1 (F-box protein At4g05010 [Cucumis sativus] >XP_031744056.1 F-box protein At4g05010 [Cucumis sativus] >KGN49188.1 hypothetical protein Csa_003153 [Cucumis sativus])

HSP 1 Score: 307.8 bits (787), Expect = 8.7e-80
Identity = 163/183 (89.07%), Postives = 170/183 (92.90%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSINL------KR 60
           MALGKK+GCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISC+EEDS  +L      KR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCHEEDSPTDLTPKAPSKR 60

Query: 61  RCNVVSTAVDADRSLLEALPQEILIRVLCGVEHDDLKQLVRVSKTISEATLIAKEWHFAY 120
           RCNVVSTAV+ DRSLLEALPQEILIRVLCGVEHDDLKQL+RVSKTI+EATLIAK+ HFAY
Sbjct: 61  RCNVVSTAVEDDRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTINEATLIAKDSHFAY 120

Query: 121 STPSKVRTFRTAIELDDSSDFDEIEAPNAPPTRRFRTPLNRKKLAEISIALFA-EEDQWP 177
           STPSKVR FRTAIELDDSSDFDEIEAPNA PTRRFRTPLNRKKLAEISIALFA EEDQWP
Sbjct: 121 STPSKVRRFRTAIELDDSSDFDEIEAPNACPTRRFRTPLNRKKLAEISIALFAEEEDQWP 180

[Close]

BLAST of ClCG01G022560 vs. NCBI nr
Match: XP_038880993.1 (F-box protein SKIP27 [Benincasa hispida])

HSP 1 Score: 306.6 bits (784), Expect = 1.9e-79
Identity = 160/183 (87.43%), Postives = 170/183 (92.90%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSINL------KR 60
           MALGKKSGCLKSK+VVSA DKGLDFGVVRYTRGLGRKRVVIS NEEDSSI+L      KR
Sbjct: 1   MALGKKSGCLKSKTVVSATDKGLDFGVVRYTRGLGRKRVVISYNEEDSSIDLTPKAQSKR 60

Query: 61  RCNVVSTAVDADRSLLEALPQEILIRVLCGVEHDDLKQLVRVSKTISEATLIAKEWHFAY 120
           RC+VVSTAVD+DRSLLEALPQEILI+VLCGVEHDDLKQLVRVSKTISEATL+AKEWHFAY
Sbjct: 61  RCSVVSTAVDSDRSLLEALPQEILIKVLCGVEHDDLKQLVRVSKTISEATLVAKEWHFAY 120

Query: 121 STPSKVRTFRTAIELDDSSDFDEIEAPNAPPTRRFRTPLNRKKLAEISIALFAEED-QWP 177
           +TPSKVRTFRTAIELDDSSD+DEIEAP AP TRR RTPLNRKKLAEIS+ALF EE+ QWP
Sbjct: 121 NTPSKVRTFRTAIELDDSSDYDEIEAPYAPHTRRIRTPLNRKKLAEISVALFVEEENQWP 180

[Close]

BLAST of ClCG01G022560 vs. NCBI nr
Match: XP_022977983.1 (F-box protein SKIP27-like [Cucurbita maxima])

HSP 1 Score: 288.9 bits (738), Expect = 4.2e-74
Identity = 149/186 (80.11%), Postives = 166/186 (89.25%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSINL------KR 60
           MALGKKSGCLKSKSVVSAADK LDFGVVRY RGLGRKRVVISCN+EDSSI+L      KR
Sbjct: 1   MALGKKSGCLKSKSVVSAADKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKTPSKR 60

Query: 61  RCNVVSTAVDADRSLLEALPQEILIRVLCGVEHDDLKQLVRVSKTISEATLIAKEWHFAY 120
           RC+VVST VDA  SLLE LPQEILIR+LCG++HDDLKQLVRVSKTISEATLIAKEWHFAY
Sbjct: 61  RCSVVSTTVDAGWSLLEVLPQEILIRILCGLDHDDLKQLVRVSKTISEATLIAKEWHFAY 120

Query: 121 STPSKVRTFRTAIELDDS-SDFDEIEAPNAPPTRRFRTPLNRKKLAEISIALFAEEDQWP 180
            TPSK+R FRT+IELDD+  D DEIEAP+AP TRRFR+PL+RKKLA+IS+ALFAEE+QWP
Sbjct: 121 RTPSKIRAFRTSIELDDNFIDLDEIEAPDAPLTRRFRSPLSRKKLADISVALFAEEEQWP 180

[Close]

BLAST of ClCG01G022560 vs. ExPASy Swiss-Prot
Match: O65416 (F-box protein SKIP27 OS=Arabidopsis thaliana OX=3702 GN=SKIP27 PE=1 SV=2)

HSP 1 Score: 131.0 bits (328), Expect = 1.9e-29
Identity = 78/191 (40.84%), Postives = 116/191 (60.73%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADKGLDFGV--VRYTRGLGRKRVVI-SCNEED---------- 60
           MAL K+   + S +     ++ L+ G+  VR+TRGLGRKR++I SC  E           
Sbjct: 34  MALSKRGFVMTSNARFHGEEEELELGLGSVRFTRGLGRKRILISSCVRESLSRSAVEIPV 93

Query: 61  --------SSINLKRRCNVVSTAVDADRSLLEALPQEILIRVLCGVEHDDLKQLVRVSKT 120
                   SS+  +R    + ++  +++S LE LPQ++LIRV+CGV+H+DLK L  VSK+
Sbjct: 94  VSESPPVKSSLKRQRSRITIVSSSSSEKSRLECLPQDLLIRVICGVDHEDLKSLKLVSKS 153

Query: 121 ISEATLIAKEWHFAYSTPSKVRTFRTAIELDDSSDF----DEIEAPNAPPTRRFRTPLNR 167
           I EA+L+AK  HFAY+TP K R FR +I+L++ SD     D+IE PNAP   R+     +
Sbjct: 154 IREASLVAKTLHFAYTTPKKTRAFRNSIDLEEVSDSRHQEDDIEPPNAPRHYRWTKAKRK 213

[Close]

BLAST of ClCG01G022560 vs. ExPASy Swiss-Prot
Match: Q8GX77 (F-box protein At1g61340 OS=Arabidopsis thaliana OX=3702 GN=At1g61340 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-26
Identity = 83/184 (45.11%), Postives = 109/184 (59.24%), Query Frame = 0


Query: 1   MALGKK-----SGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNE--EDSSINL- 60
           MALGKK        L+ +  V     GL    V+Y RG GRKR++IS  +  EDS     
Sbjct: 1   MALGKKRIVTQKPNLRQRRDVDNGGLGLGLEFVQYKRGFGRKRILISSGDEMEDSIFTSP 60

Query: 61  --KRRCNVVSTAVDADRSL-LEALPQEILIRVLCGVEHDDLKQLVRVSKTISEATLIAKE 120
             K+ C+  +T+V   +S  LE LP +IL+R++CGVEH+DLKQL  VSKTI EAT+IAK+
Sbjct: 61  VGKKLCDDKTTSVAEGQSRELEDLPLDILVRIICGVEHEDLKQLFHVSKTIREATMIAKQ 120

Query: 121 WHFAYSTPSKVRTFRTA-----IELDDSSDFDEIEAPNAPPTRRFR-TPLNRKK-LAEIS 167
            HFAYSTP K   F           D   D +EIEAP AP  +R+R + +NR K  + +S
Sbjct: 121 SHFAYSTPRKTSVFHHGRFGWDKPFDVEDDDEEIEAPGAPLQKRYRLSRINRNKDDSGVS 180

[Close]

BLAST of ClCG01G022560 vs. ExPASy Swiss-Prot
Match: Q9S9T6 (F-box protein At4g05010 OS=Arabidopsis thaliana OX=3702 GN=At4g05010 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.4e-25
Identity = 77/151 (50.99%), Postives = 98/151 (64.90%), Query Frame = 0


Query: 23  LDFGVVRYTRGLGRKRVVISCN-EEDSSINLKRRCNVVSTAVDADRSLLEALPQEILIRV 82
           L  G VR+TRGLGRKR++IS    E+ S  +KR  +      ++ RSLLE L Q+ILIRV
Sbjct: 19  LGLGFVRFTRGLGRKRILISKRAPENDSPPVKRPSH---ETTESCRSLLETLHQDILIRV 78

Query: 83  LCGVEHDDLKQLVRVSKTISEATLIAKEWHFAYSTPSKVRTFRTAIELDD-----SSDFD 142
           LC V+H+DL  L RVSKTI +A + AK+ HF YSTP K   FR AI + D     SS  D
Sbjct: 79  LCHVDHEDLATLKRVSKTIRKAVIEAKKSHFDYSTPKKRLPFRDAILILDSNSNSSSQDD 138

Query: 143 EIEAPNAPPTRRFRTPLNRKK-LAEISIALF 167
           E+E PNAP  RRF   +NR+  L++IS+ LF
Sbjct: 139 EMEPPNAPIRRRF---INRESDLSKISMVLF 163

[Close]

BLAST of ClCG01G022560 vs. ExPASy Swiss-Prot
Match: Q5XF11 (F-box protein At4g35930 OS=Arabidopsis thaliana OX=3702 GN=At4g35930 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-08
Identity = 36/122 (29.51%), Postives = 67/122 (54.92%), Query Frame = 0


Query: 68  SLLEALPQEILIRVLCGVEHDDLKQLVRVSKTISEATLIAKEWHFAYSTPSKVR----TF 127
           S LE+LP ++L++++C + HD LK +  VS+ I  AT++A+++HF Y+TP + R      
Sbjct: 160 SQLESLPMDLLVKIVCHLHHDQLKAVFHVSQRIRMATILARQYHFNYTTPDRSRQEMLRV 219

Query: 128 RTAIELD------DSSDFDEIEAPNAPPT-RRFRTPLNRKKLAE---ISIALFAEEDQWP 176
            T + ++         +   + +P+ P   +    P +R KLAE   I+  LF ++  +P
Sbjct: 220 MTPVPINRWPFRRGDGNPTMVSSPHTPKAPKHAPRPPSRTKLAEMKQITAVLFQDQTPFP 279

[Close]

BLAST of ClCG01G022560 vs. ExPASy TrEMBL
Match: A0A5A7UGT0 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003340 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 1.3e-81
Identity = 164/183 (89.62%), Postives = 173/183 (94.54%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSINL------KR 60
           MALGKK+GCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSI+L      KR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60

Query: 61  RCNVVSTAVDADRSLLEALPQEILIRVLCGVEHDDLKQLVRVSKTISEATLIAKEWHFAY 120
           RCNVVSTAV+ADRSLLEALPQEILIRVLCGVEHDDLKQL+RVSKTISEATLIAK+ HFAY
Sbjct: 61  RCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120

Query: 121 STPSKVRTFRTAIELDDSSDFDEIEAPNAPPTRRFRTPLNRKKLAEISIALFA-EEDQWP 177
           STPSKVR FRTAIEL+DSSDFDEIEAPNA PTRRFR+PLNRKKLAEIS+ALFA EED+WP
Sbjct: 121 STPSKVRAFRTAIELNDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP 180

[Close]

BLAST of ClCG01G022560 vs. ExPASy TrEMBL
Match: A0A5D3CPZ7 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007130 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 1.3e-81
Identity = 164/183 (89.62%), Postives = 172/183 (93.99%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSINL------KR 60
           MALGKK+GCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSI+L      KR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60

Query: 61  RCNVVSTAVDADRSLLEALPQEILIRVLCGVEHDDLKQLVRVSKTISEATLIAKEWHFAY 120
            CNVVSTAV+ADRSLLEALPQEILIRVLCGVEHDDLKQL+RVSKTISEATLIAK+ HFAY
Sbjct: 61  HCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120

Query: 121 STPSKVRTFRTAIELDDSSDFDEIEAPNAPPTRRFRTPLNRKKLAEISIALFA-EEDQWP 177
           STPSKVR FRTAIELDDSSDFDEIEAPNA PTRRFR+PLNRKKLAEIS+ALFA EED+WP
Sbjct: 121 STPSKVRAFRTAIELDDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP 180

[Close]

BLAST of ClCG01G022560 vs. ExPASy TrEMBL
Match: A0A1S3B0I0 (F-box protein At4g05010-like OS=Cucumis melo OX=3656 GN=LOC103484553 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 1.3e-81
Identity = 164/183 (89.62%), Postives = 173/183 (94.54%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSINL------KR 60
           MALGKK+GCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSI+L      KR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60

Query: 61  RCNVVSTAVDADRSLLEALPQEILIRVLCGVEHDDLKQLVRVSKTISEATLIAKEWHFAY 120
           RCNVVSTAV+ADRSLLEALPQEILIRVLCGVEHDDLKQL+RVSKTISEATLIAK+ HFAY
Sbjct: 61  RCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120

Query: 121 STPSKVRTFRTAIELDDSSDFDEIEAPNAPPTRRFRTPLNRKKLAEISIALFA-EEDQWP 177
           STPSKVR FRTAIEL+DSSDFDEIEAPNA PTRRFR+PLNRKKLAEIS+ALFA EED+WP
Sbjct: 121 STPSKVRAFRTAIELNDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP 180

[Close]

BLAST of ClCG01G022560 vs. ExPASy TrEMBL
Match: A0A0A0KI01 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516960 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 4.2e-80
Identity = 163/183 (89.07%), Postives = 170/183 (92.90%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSINL------KR 60
           MALGKK+GCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISC+EEDS  +L      KR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCHEEDSPTDLTPKAPSKR 60

Query: 61  RCNVVSTAVDADRSLLEALPQEILIRVLCGVEHDDLKQLVRVSKTISEATLIAKEWHFAY 120
           RCNVVSTAV+ DRSLLEALPQEILIRVLCGVEHDDLKQL+RVSKTI+EATLIAK+ HFAY
Sbjct: 61  RCNVVSTAVEDDRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTINEATLIAKDSHFAY 120

Query: 121 STPSKVRTFRTAIELDDSSDFDEIEAPNAPPTRRFRTPLNRKKLAEISIALFA-EEDQWP 177
           STPSKVR FRTAIELDDSSDFDEIEAPNA PTRRFRTPLNRKKLAEISIALFA EEDQWP
Sbjct: 121 STPSKVRRFRTAIELDDSSDFDEIEAPNACPTRRFRTPLNRKKLAEISIALFAEEEDQWP 180

[Close]

BLAST of ClCG01G022560 vs. ExPASy TrEMBL
Match: A0A6J1IRQ4 (F-box protein SKIP27-like OS=Cucurbita maxima OX=3661 GN=LOC111478110 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 2.0e-74
Identity = 149/186 (80.11%), Postives = 166/186 (89.25%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSINL------KR 60
           MALGKKSGCLKSKSVVSAADK LDFGVVRY RGLGRKRVVISCN+EDSSI+L      KR
Sbjct: 1   MALGKKSGCLKSKSVVSAADKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKTPSKR 60

Query: 61  RCNVVSTAVDADRSLLEALPQEILIRVLCGVEHDDLKQLVRVSKTISEATLIAKEWHFAY 120
           RC+VVST VDA  SLLE LPQEILIR+LCG++HDDLKQLVRVSKTISEATLIAKEWHFAY
Sbjct: 61  RCSVVSTTVDAGWSLLEVLPQEILIRILCGLDHDDLKQLVRVSKTISEATLIAKEWHFAY 120

Query: 121 STPSKVRTFRTAIELDDS-SDFDEIEAPNAPPTRRFRTPLNRKKLAEISIALFAEEDQWP 180
            TPSK+R FRT+IELDD+  D DEIEAP+AP TRRFR+PL+RKKLA+IS+ALFAEE+QWP
Sbjct: 121 RTPSKIRAFRTSIELDDNFIDLDEIEAPDAPLTRRFRSPLSRKKLADISVALFAEEEQWP 180

[Close]

BLAST of ClCG01G022560 vs. TAIR 10
Match: AT4G21510.1 (F-box family protein )

HSP 1 Score: 131.0 bits (328), Expect = 1.4e-30
Identity = 78/191 (40.84%), Postives = 116/191 (60.73%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADKGLDFGV--VRYTRGLGRKRVVI-SCNEED---------- 60
           MAL K+   + S +     ++ L+ G+  VR+TRGLGRKR++I SC  E           
Sbjct: 34  MALSKRGFVMTSNARFHGEEEELELGLGSVRFTRGLGRKRILISSCVRESLSRSAVEIPV 93

Query: 61  --------SSINLKRRCNVVSTAVDADRSLLEALPQEILIRVLCGVEHDDLKQLVRVSKT 120
                   SS+  +R    + ++  +++S LE LPQ++LIRV+CGV+H+DLK L  VSK+
Sbjct: 94  VSESPPVKSSLKRQRSRITIVSSSSSEKSRLECLPQDLLIRVICGVDHEDLKSLKLVSKS 153

Query: 121 ISEATLIAKEWHFAYSTPSKVRTFRTAIELDDSSDF----DEIEAPNAPPTRRFRTPLNR 167
           I EA+L+AK  HFAY+TP K R FR +I+L++ SD     D+IE PNAP   R+     +
Sbjct: 154 IREASLVAKTLHFAYTTPKKTRAFRNSIDLEEVSDSRHQEDDIEPPNAPRHYRWTKAKRK 213

[Close]

BLAST of ClCG01G022560 vs. TAIR 10
Match: AT1G61340.1 (F-box family protein )

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-27
Identity = 83/184 (45.11%), Postives = 109/184 (59.24%), Query Frame = 0


Query: 1   MALGKK-----SGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNE--EDSSINL- 60
           MALGKK        L+ +  V     GL    V+Y RG GRKR++IS  +  EDS     
Sbjct: 1   MALGKKRIVTQKPNLRQRRDVDNGGLGLGLEFVQYKRGFGRKRILISSGDEMEDSIFTSP 60

Query: 61  --KRRCNVVSTAVDADRSL-LEALPQEILIRVLCGVEHDDLKQLVRVSKTISEATLIAKE 120
             K+ C+  +T+V   +S  LE LP +IL+R++CGVEH+DLKQL  VSKTI EAT+IAK+
Sbjct: 61  VGKKLCDDKTTSVAEGQSRELEDLPLDILVRIICGVEHEDLKQLFHVSKTIREATMIAKQ 120

Query: 121 WHFAYSTPSKVRTFRTA-----IELDDSSDFDEIEAPNAPPTRRFR-TPLNRKK-LAEIS 167
            HFAYSTP K   F           D   D +EIEAP AP  +R+R + +NR K  + +S
Sbjct: 121 SHFAYSTPRKTSVFHHGRFGWDKPFDVEDDDEEIEAPGAPLQKRYRLSRINRNKDDSGVS 180

[Close]

BLAST of ClCG01G022560 vs. TAIR 10
Match: AT4G05010.1 (F-box family protein )

HSP 1 Score: 115.9 bits (289), Expect = 4.5e-26
Identity = 77/151 (50.99%), Postives = 98/151 (64.90%), Query Frame = 0


Query: 23  LDFGVVRYTRGLGRKRVVISCN-EEDSSINLKRRCNVVSTAVDADRSLLEALPQEILIRV 82
           L  G VR+TRGLGRKR++IS    E+ S  +KR  +      ++ RSLLE L Q+ILIRV
Sbjct: 19  LGLGFVRFTRGLGRKRILISKRAPENDSPPVKRPSH---ETTESCRSLLETLHQDILIRV 78

Query: 83  LCGVEHDDLKQLVRVSKTISEATLIAKEWHFAYSTPSKVRTFRTAIELDD-----SSDFD 142
           LC V+H+DL  L RVSKTI +A + AK+ HF YSTP K   FR AI + D     SS  D
Sbjct: 79  LCHVDHEDLATLKRVSKTIRKAVIEAKKSHFDYSTPKKRLPFRDAILILDSNSNSSSQDD 138

Query: 143 EIEAPNAPPTRRFRTPLNRKK-LAEISIALF 167
           E+E PNAP  RRF   +NR+  L++IS+ LF
Sbjct: 139 EMEPPNAPIRRRF---INRESDLSKISMVLF 163

[Close]

BLAST of ClCG01G022560 vs. TAIR 10
Match: AT1G61340.2 (F-box family protein )

HSP 1 Score: 99.4 bits (246), Expect = 4.4e-21
Identity = 83/230 (36.09%), Postives = 109/230 (47.39%), Query Frame = 0


Query: 1   MALGKK-----SGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNE--EDSSINL- 60
           MALGKK        L+ +  V     GL    V+Y RG GRKR++IS  +  EDS     
Sbjct: 1   MALGKKRIVTQKPNLRQRRDVDNGGLGLGLEFVQYKRGFGRKRILISSGDEMEDSIFTSP 60

Query: 61  --KRRCNVVSTAVDADRSL-LEALPQEIL------------------------------- 120
             K+ C+  +T+V   +S  LE LP +IL                               
Sbjct: 61  VGKKLCDDKTTSVAEGQSRELEDLPLDILLRVFVNSASVNQIELKVESFLFSEIQNRNGN 120

Query: 121 ---------------IRVLCGVEHDDLKQLVRVSKTISEATLIAKEWHFAYSTPSKVRTF 167
                          +R++CGVEH+DLKQL  VSKTI EAT+IAK+ HFAYSTP K   F
Sbjct: 121 EKMFNFFHIWKTFVIVRIICGVEHEDLKQLFHVSKTIREATMIAKQSHFAYSTPRKTSVF 180

[Close]

BLAST of ClCG01G022560 vs. TAIR 10
Match: AT4G35930.1 (F-box family protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-09
Identity = 36/122 (29.51%), Postives = 67/122 (54.92%), Query Frame = 0


Query: 68  SLLEALPQEILIRVLCGVEHDDLKQLVRVSKTISEATLIAKEWHFAYSTPSKVR----TF 127
           S LE+LP ++L++++C + HD LK +  VS+ I  AT++A+++HF Y+TP + R      
Sbjct: 160 SQLESLPMDLLVKIVCHLHHDQLKAVFHVSQRIRMATILARQYHFNYTTPDRSRQEMLRV 219

Query: 128 RTAIELD------DSSDFDEIEAPNAPPT-RRFRTPLNRKKLAE---ISIALFAEEDQWP 176
            T + ++         +   + +P+ P   +    P +R KLAE   I+  LF ++  +P
Sbjct: 220 MTPVPINRWPFRRGDGNPTMVSSPHTPKAPKHAPRPPSRTKLAEMKQITAVLFQDQTPFP 279

The following BLAST results are available for this feature:

BLAST of ClCG01G022560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439907.1	2.7e-81	89.62	PREDICTED: F-box protein At4g05010-like [Cucumis melo] >KAA0052721.1 F-box prote...	[more]
TYK13104.1	2.7e-81	89.62	F-box protein [Cucumis melo var. makuwa]	[more]
XP_004134730.1	8.7e-80	89.07	F-box protein At4g05010 [Cucumis sativus] >XP_031744056.1 F-box protein At4g0501...	[more]
XP_038880993.1	1.9e-79	87.43	F-box protein SKIP27 [Benincasa hispida]	[more]
XP_022977983.1	4.2e-74	80.11	F-box protein SKIP27-like [Cucurbita maxima]	[more]

BLAST of ClCG01G022560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65416	1.9e-29	40.84	F-box protein SKIP27 OS=Arabidopsis thaliana OX=3702 GN=SKIP27 PE=1 SV=2	[more]
Q8GX77	1.5e-26	45.11	F-box protein At1g61340 OS=Arabidopsis thaliana OX=3702 GN=At1g61340 PE=2 SV=1	[more]
Q9S9T6	6.4e-25	50.99	F-box protein At4g05010 OS=Arabidopsis thaliana OX=3702 GN=At4g05010 PE=2 SV=1	[more]
Q5XF11	2.4e-08	29.51	F-box protein At4g35930 OS=Arabidopsis thaliana OX=3702 GN=At4g35930 PE=2 SV=1	[more]

BLAST of ClCG01G022560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UGT0	1.3e-81	89.62	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003340...	[more]
A0A5D3CPZ7	1.3e-81	89.62	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007130...	[more]
A0A1S3B0I0	1.3e-81	89.62	F-box protein At4g05010-like OS=Cucumis melo OX=3656 GN=LOC103484553 PE=4 SV=1	[more]
A0A0A0KI01	4.2e-80	89.07	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516960 PE=4 ...	[more]
A0A6J1IRQ4	2.0e-74	80.11	F-box protein SKIP27-like OS=Cucurbita maxima OX=3661 GN=LOC111478110 PE=4 SV=1	[more]

BLAST of ClCG01G022560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21510.1	1.4e-30	40.84	F-box family protein	[more]
AT1G61340.1	1.1e-27	45.11	F-box family protein	[more]
AT4G05010.1	4.5e-26	50.99	F-box family protein	[more]
AT1G61340.2	4.4e-21	36.09	F-box family protein	[more]
AT4G35930.1	1.7e-09	29.51	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34049	F-BOX PROTEIN SKIP27	coord: 4..170
None	No IPR available	PANTHER	PTHR34049:SF1	F-BOX PROTEIN SKIP27	coord: 4..170
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 67..117 score: 8.755626

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G022560.2	ClCG01G022560.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding