ClCG01G020560 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G020560
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	RSN1_7TM domain-containing protein
Location	CG_Chr01: 34690441 .. 34691190 (-)
RNA-Seq Expression	ClCG01G020560
Synteny	ClCG01G020560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCACTTGTGACACTTGTAGGAACAACAAGAAAGAAAGACAAAAGAAGAAGAAGATGCATCATATAGCAACCAAAAGCAATCTTGTTGATTCAGGTCTTCAAACAGATCAGCTTGGTTGCAGAGATAACAATTGCCTCCCTCTCTGCCCCAAGCCCCGCCGTCTCGAACCCGCCATCCCCAGTTTCCTCGCCCCTCTCCGATGTGCCCATCACATTCACAGGTCACTTTCTCATCTTACTCTTCTTCAACTTAGTGACAAAATTTTACATTCTAAATTTTACATTCTTTCACCAGCCAATCGAGTGGCGATGCGCGGAGTGGGATTCTAAATATCATCGCAGGAAAGGTCAGGAAATGGATTCCTTGTCTGCGAAACTTGTTAACTATTGTCAATAAGAAGATTAACATATGTATCTTATCAAGATTGTGATGTGTGATCTCTTAACCAAATGAATTCACGTGATGGGAATTGTTCTGAAGAATCTGTGAATGCTTATGTGTGCAGAATGTTGAAGGGAGAGATTGTTCGTGTTCCGGTTGTTACCCGGCATGTTATTCGGGTTCGCCACCGGGAAGAACAGAGAATCCATTGGTTCACGACGTTTATTTTCTTCATCAAATGGAGATTCATTCGCCATTTTCAAGGACCAACCTCTCTGATAAGTTCAGCCTGACCTCTGCCTCACCCACATGAACAGAACAAAGAAGCCATTGGAGGAGTGGACAGAGATATATTGGCTGTTTTTAT

mRNA sequence

TTTCACTTGTGACACTTGTAGGAACAACAAGAAAGAAAGACAAAAGAAGAAGAAGATGCATCATATAGCAACCAAAAGCAATCTTGTTGATTCAGGTCTTCAAACAGATCAGCTTGGTTGCAGAGATAACAATTGCCTCCCTCTCTGCCCCAAGCCCCGCCGTCTCGAACCCGCCATCCCCAGTTTCCTCGCCCCTCTCCGATGTGCCCATCACATTCACAGCCAATCGAGTGGCGATGCGCGGAGTGGGATTCTAAATATCATCGCAGGAAAGAATGTTGAAGGGAGAGATTGTTCGTGTTCCGGTTGTTACCCGGCATGTTATTCGGGTTCGCCACCGGGAAGAACAGAGAATCCATTGGTTCACGACGTTTATTTTCTTCATCAAATGGAGATTCATTCGCCATTTTCAAGGACCAACCTCTCTGATAAGTTCAGCCTGACCTCTGCCTCACCCACATGAACAGAACAAAGAAGCCATTGGAGGAGTGGACAGAGATATATTGGCTGTTTTTAT

Coding sequence (CDS)

ATGCATCATATAGCAACCAAAAGCAATCTTGTTGATTCAGGTCTTCAAACAGATCAGCTTGGTTGCAGAGATAACAATTGCCTCCCTCTCTGCCCCAAGCCCCGCCGTCTCGAACCCGCCATCCCCAGTTTCCTCGCCCCTCTCCGATGTGCCCATCACATTCACAGCCAATCGAGTGGCGATGCGCGGAGTGGGATTCTAAATATCATCGCAGGAAAGAATGTTGAAGGGAGAGATTGTTCGTGTTCCGGTTGTTACCCGGCATGTTATTCGGGTTCGCCACCGGGAAGAACAGAGAATCCATTGGTTCACGACGTTTATTTTCTTCATCAAATGGAGATTCATTCGCCATTTTCAAGGACCAACCTCTCTGATAAGTTCAGCCTGACCTCTGCCTCACCCACATGA

Protein sequence

MHHIATKSNLVDSGLQTDQLGCRDNNCLPLCPKPRRLEPAIPSFLAPLRCAHHIHSQSSGDARSGILNIIAGKNVEGRDCSCSGCYPACYSGSPPGRTENPLVHDVYFLHQMEIHSPFSRTNLSDKFSLTSASPT

Homology

[Close]

BLAST of ClCG01G020560 vs. NCBI nr
Match: XP_038881848.1 (uncharacterized protein LOC120073212 [Benincasa hispida])

HSP 1 Score: 266.2 bits (679), Expect = 1.6e-67
Identity = 124/135 (91.85%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 1   MHHIATKSNLVDSGLQTDQLGCRDNNCLPLCPKPRRLEPAIPSFLAPLRCAHHIHSQSSG 60
           M+HIATKSNLVDSGLQTDQLG +DNN LPLCPKPRRLEP IPSFLAPL CAHH+HSQSSG
Sbjct: 48  MYHIATKSNLVDSGLQTDQLGFKDNNSLPLCPKPRRLEPVIPSFLAPLGCAHHVHSQSSG 107

Query: 61  DARSGILNIIAGKNVEGRDCSCSGCYPACYSGSPPGRTENPLVHDVYFLHQMEIHSPFSR 120
           D RSGILNIIAGK+VEGRDC CSGCYP+CYSGSPPGRTENPLVHDVYFLHQMEIHSPFSR
Sbjct: 108 DTRSGILNIIAGKHVEGRDCLCSGCYPSCYSGSPPGRTENPLVHDVYFLHQMEIHSPFSR 167

Query: 121 TNLSDKFSLTSASPT 136
           TNLSDKFSLTSASPT
Sbjct: 168 TNLSDKFSLTSASPT 182

[Close]

BLAST of ClCG01G020560 vs. NCBI nr
Match: XP_031743884.1 (uncharacterized protein LOC116404717 [Cucumis sativus] >KGN48953.1 hypothetical protein Csa_003840 [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 2.0e-62
Identity = 118/135 (87.41%), Postives = 125/135 (92.59%), Query Frame = 0


Query: 1   MHHIATKSNLVDSGLQTDQLGCRDNNCLPLCPKPRRLEPAIPSFLAPLRCAHHIHSQSSG 60
           MHH ATKSNLVDS L+T+Q G +DNN LPLCPKPRRLEPAIPSFLAPL CAHHIHSQSSG
Sbjct: 1   MHHRATKSNLVDSDLETNQHGFKDNNGLPLCPKPRRLEPAIPSFLAPLICAHHIHSQSSG 60

Query: 61  DARSGILNIIAGKNVEGRDCSCSGCYPACYSGSPPGRTENPLVHDVYFLHQMEIHSPFSR 120
           D+RS ILNII GKNVEGRDC  SGCYP+CYSGSPPGRTENPLVHD+YFLHQMEIHSPFSR
Sbjct: 61  DSRSEILNIIEGKNVEGRDCLSSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEIHSPFSR 120

Query: 121 TNLSDKFSLTSASPT 136
           TNLSDKF+LTSASPT
Sbjct: 121 TNLSDKFNLTSASPT 135

[Close]

BLAST of ClCG01G020560 vs. NCBI nr
Match: KAA0025640.1 (hypothetical protein E6C27_scaffold253G001330 [Cucumis melo var. makuwa] >TYK12513.1 hypothetical protein E5676_scaffold255G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 244.6 bits (623), Expect = 4.9e-61
Identity = 115/135 (85.19%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MHHIATKSNLVDSGLQTDQLGCRDNNCLPLCPKPRRLEPAIPSFLAPLRCAHHIHSQSSG 60
           MHHIATKSNLVDS L+T+Q G +DNN LPLCPKPRRLEPAIPSFL PLRCAHHIHSQSSG
Sbjct: 1   MHHIATKSNLVDSDLETNQPGFKDNNGLPLCPKPRRLEPAIPSFLVPLRCAHHIHSQSSG 60

Query: 61  DARSGILNIIAGKNVEGRDCSCSGCYPACYSGSPPGRTENPLVHDVYFLHQMEIHSPFSR 120
           D+RS +LNII GKNVE RDC  SGCYP+CYSGSPPGRTENPLVHD+YFLHQMEI S FSR
Sbjct: 61  DSRSEVLNIIEGKNVEARDCFSSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEIRSSFSR 120

Query: 121 TNLSDKFSLTSASPT 136
           TNLSDKF+LTSASPT
Sbjct: 121 TNLSDKFNLTSASPT 135

[Close]

BLAST of ClCG01G020560 vs. NCBI nr
Match: XP_022133306.1 (uncharacterized protein LOC111005918 [Momordica charantia])

HSP 1 Score: 214.9 bits (546), Expect = 4.2e-52
Identity = 105/136 (77.21%), Postives = 114/136 (83.82%), Query Frame = 0


Query: 1   MH-HIATKSNLVDSGLQTDQLGCRDNNCLPLCPKPRRLEPAIPSFLAPLRCAHHIHSQSS 60
           MH HIATKSNLVDS  +T+     + NCLPLCPKPRR  P IP+FL PLRCA  IHSQSS
Sbjct: 2   MHRHIATKSNLVDSSPETN----NNVNCLPLCPKPRRPRPTIPNFLVPLRCADRIHSQSS 61

Query: 61  GDARSGILNIIAGKNVEGRDCSCSGCYPACYSGSPPGRTENPLVHDVYFLHQMEIHSPFS 120
           G+ R+GILNIIAGKNVEGRDC CS CYP+CYSGSPP RTENPLVHDVYFLHQME+ SPFS
Sbjct: 62  GEGRNGILNIIAGKNVEGRDCLCSNCYPSCYSGSPPRRTENPLVHDVYFLHQMELLSPFS 121

Query: 121 RTNLSDKFSLTSASPT 136
            T LS+KFSLTSASPT
Sbjct: 122 HTKLSEKFSLTSASPT 133

[Close]

BLAST of ClCG01G020560 vs. NCBI nr
Match: KAG6594753.1 (hypothetical protein SDJN03_11306, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 193.7 bits (491), Expect = 1.0e-45
Identity = 93/121 (76.86%), Postives = 97/121 (80.17%), Query Frame = 0


Query: 1   MHHIATKSNLVDSGLQTDQLGCRDNNCLPLCPKPRRLEPAIPSFLAPLRCAHHIHSQSSG 60
           MHHIA KSNLVDS  +T      D+N  PLCPKPRRL PAIPSFLAP RCAH IHSQSS 
Sbjct: 4   MHHIAAKSNLVDSSPET------DHNAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSS 63

Query: 61  DARSGILNIIAGKNVEGRDCSCSGCYPACYSGSPPGRTENPLVHDVYFLHQMEIHSPFSR 120
           D RS ILNIIAGK VEGRDC C  CYP+CYSGSPPGRT NPLV DVYFLHQ+EI SPFSR
Sbjct: 64  DPRSAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSR 118

Query: 121 T 122
           T
Sbjct: 124 T 118

[Close]

BLAST of ClCG01G020560 vs. ExPASy TrEMBL
Match: A0A0A0KHD1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507270 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.7e-63
Identity = 118/135 (87.41%), Postives = 125/135 (92.59%), Query Frame = 0


Query: 1   MHHIATKSNLVDSGLQTDQLGCRDNNCLPLCPKPRRLEPAIPSFLAPLRCAHHIHSQSSG 60
           MHH ATKSNLVDS L+T+Q G +DNN LPLCPKPRRLEPAIPSFLAPL CAHHIHSQSSG
Sbjct: 1   MHHRATKSNLVDSDLETNQHGFKDNNGLPLCPKPRRLEPAIPSFLAPLICAHHIHSQSSG 60

Query: 61  DARSGILNIIAGKNVEGRDCSCSGCYPACYSGSPPGRTENPLVHDVYFLHQMEIHSPFSR 120
           D+RS ILNII GKNVEGRDC  SGCYP+CYSGSPPGRTENPLVHD+YFLHQMEIHSPFSR
Sbjct: 61  DSRSEILNIIEGKNVEGRDCLSSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEIHSPFSR 120

Query: 121 TNLSDKFSLTSASPT 136
           TNLSDKF+LTSASPT
Sbjct: 121 TNLSDKFNLTSASPT 135

[Close]

BLAST of ClCG01G020560 vs. ExPASy TrEMBL
Match: A0A5D3CKV6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00940 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.4e-61
Identity = 115/135 (85.19%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MHHIATKSNLVDSGLQTDQLGCRDNNCLPLCPKPRRLEPAIPSFLAPLRCAHHIHSQSSG 60
           MHHIATKSNLVDS L+T+Q G +DNN LPLCPKPRRLEPAIPSFL PLRCAHHIHSQSSG
Sbjct: 1   MHHIATKSNLVDSDLETNQPGFKDNNGLPLCPKPRRLEPAIPSFLVPLRCAHHIHSQSSG 60

Query: 61  DARSGILNIIAGKNVEGRDCSCSGCYPACYSGSPPGRTENPLVHDVYFLHQMEIHSPFSR 120
           D+RS +LNII GKNVE RDC  SGCYP+CYSGSPPGRTENPLVHD+YFLHQMEI S FSR
Sbjct: 61  DSRSEVLNIIEGKNVEARDCFSSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEIRSSFSR 120

Query: 121 TNLSDKFSLTSASPT 136
           TNLSDKF+LTSASPT
Sbjct: 121 TNLSDKFNLTSASPT 135

[Close]

BLAST of ClCG01G020560 vs. ExPASy TrEMBL
Match: A0A6J1BUP6 (uncharacterized protein LOC111005918 OS=Momordica charantia OX=3673 GN=LOC111005918 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.0e-52
Identity = 105/136 (77.21%), Postives = 114/136 (83.82%), Query Frame = 0


Query: 1   MH-HIATKSNLVDSGLQTDQLGCRDNNCLPLCPKPRRLEPAIPSFLAPLRCAHHIHSQSS 60
           MH HIATKSNLVDS  +T+     + NCLPLCPKPRR  P IP+FL PLRCA  IHSQSS
Sbjct: 2   MHRHIATKSNLVDSSPETN----NNVNCLPLCPKPRRPRPTIPNFLVPLRCADRIHSQSS 61

Query: 61  GDARSGILNIIAGKNVEGRDCSCSGCYPACYSGSPPGRTENPLVHDVYFLHQMEIHSPFS 120
           G+ R+GILNIIAGKNVEGRDC CS CYP+CYSGSPP RTENPLVHDVYFLHQME+ SPFS
Sbjct: 62  GEGRNGILNIIAGKNVEGRDCLCSNCYPSCYSGSPPRRTENPLVHDVYFLHQMELLSPFS 121

Query: 121 RTNLSDKFSLTSASPT 136
            T LS+KFSLTSASPT
Sbjct: 122 HTKLSEKFSLTSASPT 133

[Close]

BLAST of ClCG01G020560 vs. ExPASy TrEMBL
Match: A0A6P4ALR9 (uncharacterized protein LOC107424456 OS=Ziziphus jujuba OX=326968 GN=LOC107424456 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.6e-41
Identity = 90/134 (67.16%), Postives = 100/134 (74.63%), Query Frame = 0


Query: 1   MHHIATKSNLVDSGLQTDQLGCRDNNCLPLCPKPRRLEPAIPSFLAPLRCAHHIHSQSSG 60
           MHH+A KSNLVDS    D+L    N   PLCPKPRRL PAIP FL PLRC    HSQ++ 
Sbjct: 1   MHHLAVKSNLVDSDSGVDRLNSGTNFLQPLCPKPRRLGPAIPEFLKPLRCTK--HSQANT 60

Query: 61  DARSGILNIIAGKNVEGRDCSCSGCY-PACYSGSPPGRTENPLVHDVYFLHQMEIHSPFS 120
           D R+GILNII  KN EGR+C C+ C  PACYSGSPPGRT+NPLVHDV F++QME  SPFS
Sbjct: 61  DGRNGILNIITEKNSEGRECICNWCSPPACYSGSPPGRTDNPLVHDVQFMNQMEHLSPFS 120

Query: 121 RTNLSDKFSLTSAS 134
           RT LSDKF  TSAS
Sbjct: 121 RTKLSDKFGFTSAS 132

[Close]

BLAST of ClCG01G020560 vs. ExPASy TrEMBL
Match: B9T722 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0311070 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 4.0e-40
Identity = 82/134 (61.19%), Postives = 102/134 (76.12%), Query Frame = 0


Query: 1   MHHIATKSNLVDSGLQTDQLGCRDNNCLPLCPKPRRLEPAIPSFLAPLRCAHHIHSQSSG 60
           MHH+  KSNLVDSG +T +L C   N  PLCPKPRR+ P +P FL PLRC++  HSQ + 
Sbjct: 1   MHHLPVKSNLVDSGSETAKL-CFGGNNQPLCPKPRRVGPTVPEFLKPLRCSN--HSQPTS 60

Query: 61  DARSGILNIIAGKNVEGRDCSCSGCYPACYSGSPPGRTENPLVHDVYFLHQMEIHSPFSR 120
           D R+GILN+I+ K  +G +  C+GC P+ YSGSPPGRT+NPL+HDV F+HQME+ SPF+R
Sbjct: 61  DGRNGILNLISDKRPDGSESICTGCSPSNYSGSPPGRTDNPLIHDVQFIHQMELLSPFTR 120

Query: 121 TNLSDKFSLTSASP 135
           T LSDKF  TSASP
Sbjct: 121 TKLSDKFGFTSASP 131

The following BLAST results are available for this feature:

BLAST of ClCG01G020560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881848.1	1.6e-67	91.85	uncharacterized protein LOC120073212 [Benincasa hispida]	[more]
XP_031743884.1	2.0e-62	87.41	uncharacterized protein LOC116404717 [Cucumis sativus] >KGN48953.1 hypothetical ...	[more]
KAA0025640.1	4.9e-61	85.19	hypothetical protein E6C27_scaffold253G001330 [Cucumis melo var. makuwa] >TYK125...	[more]
XP_022133306.1	4.2e-52	77.21	uncharacterized protein LOC111005918 [Momordica charantia]	[more]
KAG6594753.1	1.0e-45	76.86	hypothetical protein SDJN03_11306, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of ClCG01G020560 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG01G020560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHD1	9.7e-63	87.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507270 PE=4 SV=1	[more]
A0A5D3CKV6	2.4e-61	85.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1BUP6	2.0e-52	77.21	uncharacterized protein LOC111005918 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6P4ALR9	3.6e-41	67.16	uncharacterized protein LOC107424456 OS=Ziziphus jujuba OX=326968 GN=LOC10742445...	[more]
B9T722	4.0e-40	61.19	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0311070 PE=4 SV=1	[more]

BLAST of ClCG01G020560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33384	EXPRESSED PROTEIN	coord: 1..133
None	No IPR available	PANTHER	PTHR33384:SF17	BNAC07G32200D PROTEIN	coord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G020560.2	ClCG01G020560.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034220	ion transmembrane transport
cellular_component	GO:0016020	membrane