ClCG01G020090 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG01G020090
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr01: 34217707 .. 34221055 (-)
RNA-Seq ExpressionClCG01G020090
SyntenyClCG01G020090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAGAGAAAGGGGTTATGGGGTTCTTTTGGTTCTTGGAATTTTGTTGAGCATTTACTTGGTTGAGGGGAAGGGGGCGAATAGTTCTGAAAAAAGTCGAAGTCTTGATGGTATATCCAATCAATGGTCTAATTTGGATGATACCCTCTTTGGAGTTGGTGTAACCGGAAGAAATGTGACTGTTACTGGCGGCAAGGGTGGAGGAAATTCATCCGGTGAGGGCGGCGGTGGTAGTGGGGTAAGAAAGAAAGATACAAAACATCATAAAGAACAAGGAAAAAACGGAAATGGCGGTGGTGGAGGAGGTCGCGGGGGCAATGGTGGTGGCGGTGGAGGTGGAGGAGGAGGAGGAGGTACAAAGGGTGGTGGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAGTGGTGGTGGCGGAGGTGGAGGATGGGGTTTTGGCGGAGGAGGGAGTAGGGGTTTTTGTTGGATTTGGGGATGTGGTGGCGGCGGCGGTCATGGAAAAGCCTTGGCTAGAAGAGGAGGTCCTTCAAACTAAAAAGTAA

mRNA sequence

ATGGGGAGAGAAAGGGGTTATGGGGTTCTTTTGGTTCTTGGAATTTTGTTGAGCATTTACTTGGTTGAGGGGAAGGGGGCGAATAGTTCTGAAAAAAGTCGAAGTCTTGATGGTATATCCAATCAATGGTCTAATTTGGATGATACCCTCTTTGGAGTTGGTGTAACCGGAAGAAATGTGACTGTTACTGGCGGCAAGGGTGGAGGAAATTCATCCGGTGAGGGCGGCGGTGGTAGTGGGGTAAGAAAGAAAGATACAAAACATCATAAAGAACAAGGAAAAAACGGAAATGGCGGTGGTGGAGGAGGTCGCGGGGGCAATGGTGGTGGCGGTGGAGGTGGAGGAGGAGGAGGAGGGGTTTTTGTTGGATTTGGGGATGTGGTGGCGGCGGCGGTCATGGAAAAGCCTTGGCTAGAAGAGGAGGTCCTTCAAACTAAAAAGTAA

Coding sequence (CDS)

ATGGGGAGAGAAAGGGGTTATGGGGTTCTTTTGGTTCTTGGAATTTTGTTGAGCATTTACTTGGTTGAGGGGAAGGGGGCGAATAGTTCTGAAAAAAGTCGAAGTCTTGATGGTATATCCAATCAATGGTCTAATTTGGATGATACCCTCTTTGGAGTTGGTGTAACCGGAAGAAATGTGACTGTTACTGGCGGCAAGGGTGGAGGAAATTCATCCGGTGAGGGCGGCGGTGGTAGTGGGGTAAGAAAGAAAGATACAAAACATCATAAAGAACAAGGAAAAAACGGAAATGGCGGTGGTGGAGGAGGTCGCGGGGGCAATGGTGGTGGCGGTGGAGGTGGAGGAGGAGGAGGAGGGGTTTTTGTTGGATTTGGGGATGTGGTGGCGGCGGCGGTCATGGAAAAGCCTTGGCTAGAAGAGGAGGTCCTTCAAACTAAAAAGTAA

Protein sequence

MGRERGYGVLLVLGILLSIYLVEGKGANSSEKSRSLDGISNQWSNLDDTLFGVGVTGRNVTVTGGKGGGNSSGEGGGGSGVRKKDTKHHKEQGKNGNGGGGGGRGGNGGGGGGGGGGGGVFVGFGDVVAAAVMEKPWLEEEVLQTKK
Homology
[Close]
BLAST of ClCG01G020090 vs. NCBI nr
Match: XP_038882243.1 (glycine-rich protein DOT1-like [Benincasa hispida])

HSP 1 Score: 115.9 bits (289), Expect = 2.9e-22
Identity = 93/165 (56.36%), Postives = 107/165 (64.85%), Query Frame = 0 

Query: 1   MGRERGYGVLLVLGI-LLSIYL--VEGKGANSSEKSRSLDGISNQWSNLDDTLFGVGVTG 60
           M RERG+GVLL++GI L+SIYL  VEGK   + E S +L   SNQWSN D++L+GVG+TG
Sbjct: 1   MLRERGFGVLLIIGIVLISIYLVEVEGKEVKAFETSENLGTTSNQWSNSDESLYGVGLTG 60

Query: 61  RNVTVTGGKGGGNSSGE---GGGGSGVRKKDTKHHKEQ-------------------GKN 120
           RNVTV+GGKGGGNSSGE   GGGG GVRKKD KH+K+                    G  
Sbjct: 61  RNVTVSGGKGGGNSSGEGHGGGGGGGVRKKDVKHNKKHKNKQKRAGEAAEAAMAVGGGGG 120

Query: 121 GNGGGGGGRGGNGGGGGGGGGGG---GVFVGFGDVVAAAVMEKPW 138
           GNGGGGGG GG+GGGGGGGGG G   G   G G V A    E  W
Sbjct: 121 GNGGGGGGGGGSGGGGGGGGGNGRGLGWGEGSGGVAAVEGEEVRW 165

[Close]
BLAST of ClCG01G020090 vs. NCBI nr
Match: KAE8647602.1 (hypothetical protein Csa_004179 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-16
Identity = 93/189 (49.21%), Postives = 110/189 (58.20%), Query Frame = 0 

Query: 1   MGRERGYGVLLVLGI-LLSIYLVEGKGANSSEKSRSLDGISNQWSNLDDTLFGVGVTGRN 60
           M  ERG GVLL LGI L+SIYLVEGK   S + + S+   SN WS+L+++L      GRN
Sbjct: 1   MKSERGSGVLLFLGIVLISIYLVEGKEVKSFKINESVGSTSNGWSDLNESL-----RGRN 60

Query: 61  VTVTGGKGGGNSSGE------GGGGS--GVRKKDTKHHKEQGKNGNGGGGGG-------- 120
           +T++GGKGG NSSGE      GGGGS  GVRKKDTKH+K+ GK+GNGGGG G        
Sbjct: 61  MTISGGKGGRNSSGEGHGGGGGGGGSDVGVRKKDTKHNKKHGKSGNGGGGEGVGAMVAVE 120

Query: 121 ---------------------RGGNGGGGGGGGGGGGVFVGFGDVVAAA----VMEKPWL 148
                                 G +GGG G G  G   FVGFGDV  AA    VMEK W+
Sbjct: 121 VEAARAEVVEVEGEGKWERVWMGRSGGGWGFGEEGAEGFVGFGDVAGAAAAVTVMEKHWV 180

[Close]
BLAST of ClCG01G020090 vs. NCBI nr
Match: KAG6603927.1 (hypothetical protein SDJN03_04536, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-14
Identity = 82/148 (55.41%), Postives = 91/148 (61.49%), Query Frame = 0 

Query: 1   MGRERGYGVLLVLGILLSIYLVEG-KGANSSEKSRSLDGISNQWSNLDDTLF-GVGVTGR 60
           M R RG GVLLV+GI+LS+YLVEG KG   S +     G SN+WS LD   F GVGV+GR
Sbjct: 39  MERGRGCGVLLVVGIVLSLYLVEGVKGFERSGRV----GASNEWSKLDGRPFEGVGVSGR 98

Query: 61  NVTVTGGK---------------GGGNSSGEGGGGS-------GVRKKDTKHHKEQGKNG 120
           N TV GG+               GGG   G GGGG+       GVRKKDTKH K+ GK G
Sbjct: 99  NATVNGGRDSVKRGITNGGGGGGGGGGGGGGGGGGAGGEGSGVGVRKKDTKHSKKHGKGG 158

[Close]
BLAST of ClCG01G020090 vs. NCBI nr
Match: XP_022977280.1 (putative glycine-rich cell wall structural protein 1 [Cucurbita maxima])

HSP 1 Score: 64.7 bits (156), Expect = 7.6e-07
Identity = 73/150 (48.67%), Postives = 85/150 (56.67%), Query Frame = 0 

Query: 1   MGRERGYGVLLVLGILLSIYLVEGKGANSSEKSRSLDGISNQWSNLDDTLF-GVGVTGRN 60
           M R R  GVLLV+GI+LS+ LVE  G    E+S S+D  SN+WS LD +LF GVGV+GRN
Sbjct: 1   MERGRVCGVLLVVGIVLSLSLVE--GLKGFERSGSVD-TSNEWSELDGSLFGGVGVSGRN 60

Query: 61  VTVTGGK---------------GGGNSSGEGGGGSGVR---------KKDTKHHKEQGKN 120
            TV GG                GGG   G GG GSGV          +K       +G+ 
Sbjct: 61  ATVNGGSDSVKRGITNGGGGGGGGGGGGGGGGEGSGVGAEVAAVGEVEKAMDGEVAEGEE 120

Query: 121 GNGGGGGGRGGNGGGGGGGGGGGGVFVGFG 126
           G  GGGGG GG GGGGGGGGG GG + GFG
Sbjct: 121 GEXGGGGGGGGGGGGGGGGGGSGGGW-GFG 146

[Close]
BLAST of ClCG01G020090 vs. ExPASy TrEMBL
Match: A0A0A0KGL8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504700 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.3e-23
Identity = 101/190 (53.16%), Postives = 117/190 (61.58%), Query Frame = 0 

Query: 1   MGRERGYGVLLVLGI-LLSIYLVEGKGANSSEKSRSLDGISNQWSNLDDTLFGVGVTGRN 60
           M  ERG GVLL LGI L+SIYLVEGK   S + + S+   SN WS+L+++L      GRN
Sbjct: 1   MKSERGSGVLLFLGIVLISIYLVEGKEVKSFKINESVGSTSNGWSDLNESL-----RGRN 60

Query: 61  VTVTGGKGGGNSSGE------GGGGS--GVRKKDTKHHKEQGKNGNGGGGGGRGGNGGGG 120
           +T++GGKGG NSSGE      GGGGS  GVRKKDTKH+K+ GK+GNGGGGGG GGNGGGG
Sbjct: 61  MTISGGKGGRNSSGEGHGGGGGGGGSDVGVRKKDTKHNKKHGKSGNGGGGGGGGGNGGGG 120

Query: 121 GGGGGGGG------------------------------VFVGFGDVVAAA----VMEKPW 148
           GGGG GGG                               FVGFGDV  AA    VMEK W
Sbjct: 121 GGGGAGGGGGGGGGGGNGKGYGWGGVVEDGVLGEEGAEGFVGFGDVAGAAAAVTVMEKHW 180

[Close]
BLAST of ClCG01G020090 vs. ExPASy TrEMBL
Match: A0A6J1ILV4 (putative glycine-rich cell wall structural protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111477646 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.7e-07
Identity = 73/150 (48.67%), Postives = 85/150 (56.67%), Query Frame = 0 

Query: 1   MGRERGYGVLLVLGILLSIYLVEGKGANSSEKSRSLDGISNQWSNLDDTLF-GVGVTGRN 60
           M R R  GVLLV+GI+LS+ LVE  G    E+S S+D  SN+WS LD +LF GVGV+GRN
Sbjct: 1   MERGRVCGVLLVVGIVLSLSLVE--GLKGFERSGSVD-TSNEWSELDGSLFGGVGVSGRN 60

Query: 61  VTVTGGK---------------GGGNSSGEGGGGSGVR---------KKDTKHHKEQGKN 120
            TV GG                GGG   G GG GSGV          +K       +G+ 
Sbjct: 61  ATVNGGSDSVKRGITNGGGGGGGGGGGGGGGGEGSGVGAEVAAVGEVEKAMDGEVAEGEE 120

Query: 121 GNGGGGGGRGGNGGGGGGGGGGGGVFVGFG 126
           G  GGGGG GG GGGGGGGGG GG + GFG
Sbjct: 121 GEXGGGGGGGGGGGGGGGGGGSGGGW-GFG 146

The following BLAST results are available for this feature:
BLAST of ClCG01G020090 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038882243.12.9e-2256.36glycine-rich protein DOT1-like [Benincasa hispida][more]
KAE8647602.12.4e-1649.21hypothetical protein Csa_004179 [Cucumis sativus][more]
KAG6603927.11.3e-1455.41hypothetical protein SDJN03_04536, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022977280.17.6e-0748.67putative glycine-rich cell wall structural protein 1 [Cucurbita maxima][more]
BLAST of ClCG01G020090 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG01G020090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGL81.3e-2353.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504700 PE=4 SV=1[more]
A0A6J1ILV43.7e-0748.67putative glycine-rich cell wall structural protein 1 OS=Cucurbita maxima OX=3661... [more]
BLAST of ClCG01G020090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G020090.1ClCG01G020090.1mRNA