ClCG01G019070 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCTTCACCCTTTTACTTCTCGAATTCGTTATTCTCATTCGTACCATCTTCGGCTTGAGACCTAACGCCGACAAGCGCATAATCACGACGGCGCAGTTTTTGAAACTCATCGAGGAGAAGAATCCCACGATCCGATTCTCCAATAAGGTCACCTCAAGTTTTGCCGATCAGTGTGCCGTTTGCCTCTCTGAATTTGAGGAAGGGGAGAAGGTACGGAAATTGCAATGCAACCACACTTTTCATAAGGATTGCCTCGATAATTGGTTGAAACTCTGTTTCGCTACTTGTCCGCTTTGCCGTAGTAAGGTTTTGCCGGACGATATCGTCGCCGGCTACCATAGACTGCGAGACCGTGTAGAGTACGACGGCAGTGACGAGGAGCTCATCTTTTTGTTATCGGCATTACATGGTAACAGTATATATAGATTTTTCTAGGGCGAAACACCAATTTTATTTTGCTCATCACAGAATAGAATTAATTAAATAATATAGAATGTTGATTGTCTGTAGATTAACTAGGGAAATATTGTTTTCTCCCTTCAGTGACGAGCAATAGCGTTAGGGAACAGCTTGTTTCTGGTTCGATTGATCTGTAG ATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCTTCACCCTTTTACTTCTCGAATTCGTTATTCTCATTCGTACCATCTTCGGCTTGAGACCTAACGCCGACAAGCGCATAATCACGACGGCGCAGTTTTTGAAACTCATCGAGGAGAAGAATCCCACGATCCGATTCTCCAATAAGGTCACCTCAAGTTTTGCCGATCAGTGTGCCGTTTGCCTCTCTGAATTTGAGGAAGGGGAGAAGGTACGGAAATTGCAATGCAACCACACTTTTCATAAGGATTGCCTCGATAATTGGTTGAAACTCTGTTTCGCTACTTGTCCGCTTTGCCGTAGTAAGGTTTTGCCGGACGATATCGTCGCCGGCTACCATAGACTGCGAGACCGTGTAGAGTACGACGGCAGTGACGAGGAGCTCATCTTTTTGTTATCGGCATTACATGGGAAATATTGTTTTCTCCCTTCAGTGACGAGCAATAGCGTTAGGGAACAGCTTGTTTCTGGTTCGATTGATCTGTAG ATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCTTCACCCTTTTACTTCTCGAATTCGTTATTCTCATTCGTACCATCTTCGGCTTGAGACCTAACGCCGACAAGCGCATAATCACGACGGCGCAGTTTTTGAAACTCATCGAGGAGAAGAATCCCACGATCCGATTCTCCAATAAGGTCACCTCAAGTTTTGCCGATCAGTGTGCCGTTTGCCTCTCTGAATTTGAGGAAGGGGAGAAGGTACGGAAATTGCAATGCAACCACACTTTTCATAAGGATTGCCTCGATAATTGGTTGAAACTCTGTTTCGCTACTTGTCCGCTTTGCCGTAGTAAGGTTTTGCCGGACGATATCGTCGCCGGCTACCATAGACTGCGAGACCGTGTAGAGTACGACGGCAGTGACGAGGAGCTCATCTTTTTGTTATCGGCATTACATGGGAAATATTGTTTTCTCCCTTCAGTGACGAGCAATAGCGTTAGGGAACAGCTTGTTTCTGGTTCGATTGATCTGTAG MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGKYCFLPSVTSNSVREQLVSGSIDL Homology
BLAST of ClCG01G019070 vs. NCBI nr
Match: XP_038883588.1 (E3 ubiquitin-protein ligase RHA2B-like [Benincasa hispida]) HSP 1 Score: 310.8 bits (795), Expect = 7.4e-81 Identity = 150/154 (97.40%), Postives = 153/154 (99.35%), Query Frame = 0
BLAST of ClCG01G019070 vs. NCBI nr
Match: KAA0036272.1 (putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa] >TYK12666.1 putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa]) HSP 1 Score: 309.3 bits (791), Expect = 2.2e-80 Identity = 150/154 (97.40%), Postives = 152/154 (98.70%), Query Frame = 0
BLAST of ClCG01G019070 vs. NCBI nr
Match: XP_008440648.1 (PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis melo]) HSP 1 Score: 307.4 bits (786), Expect = 8.2e-80 Identity = 151/163 (92.64%), Postives = 155/163 (95.09%), Query Frame = 0
BLAST of ClCG01G019070 vs. NCBI nr
Match: XP_022963436.1 (E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita moschata] >XP_023517189.1 E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita pepo subsp. pepo] >KAG7026818.1 E3 ubiquitin-protein ligase RHA2B, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 303.1 bits (775), Expect = 1.5e-78 Identity = 146/154 (94.81%), Postives = 150/154 (97.40%), Query Frame = 0
BLAST of ClCG01G019070 vs. NCBI nr
Match: XP_022132528.1 (E3 ubiquitin-protein ligase RHA2B-like [Momordica charantia]) HSP 1 Score: 300.4 bits (768), Expect = 1.0e-77 Identity = 144/154 (93.51%), Postives = 150/154 (97.40%), Query Frame = 0
BLAST of ClCG01G019070 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2) HSP 1 Score: 80.1 bits (196), Expect = 2.8e-14 Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 0
BLAST of ClCG01G019070 vs. ExPASy Swiss-Prot
Match: Q9ZT50 (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 2.4e-13 Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 0
BLAST of ClCG01G019070 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 9.9e-12 Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = 0
BLAST of ClCG01G019070 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 6.4e-11 Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 0
BLAST of ClCG01G019070 vs. ExPASy Swiss-Prot
Match: Q0VD51 (E3 ubiquitin-protein ligase RNF13 OS=Bos taurus OX=9913 GN=RNF13 PE=2 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10 Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 0
BLAST of ClCG01G019070 vs. ExPASy TrEMBL
Match: A0A5A7SYH1 (Putative E3 ubiquitin-protein ligase RHA2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002540 PE=4 SV=1) HSP 1 Score: 309.3 bits (791), Expect = 1.0e-80 Identity = 150/154 (97.40%), Postives = 152/154 (98.70%), Query Frame = 0
BLAST of ClCG01G019070 vs. ExPASy TrEMBL
Match: A0A1S3B160 (probable E3 ubiquitin-protein ligase RHA2B OS=Cucumis melo OX=3656 GN=LOC103485001 PE=4 SV=1) HSP 1 Score: 307.4 bits (786), Expect = 4.0e-80 Identity = 151/163 (92.64%), Postives = 155/163 (95.09%), Query Frame = 0
BLAST of ClCG01G019070 vs. ExPASy TrEMBL
Match: A0A0A0KM08 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G501220 PE=4 SV=1) HSP 1 Score: 306.6 bits (784), Expect = 6.8e-80 Identity = 148/154 (96.10%), Postives = 151/154 (98.05%), Query Frame = 0
BLAST of ClCG01G019070 vs. ExPASy TrEMBL
Match: A0A6J1HG49 (E3 ubiquitin-protein ligase RHA2B-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463642 PE=4 SV=1) HSP 1 Score: 303.1 bits (775), Expect = 7.5e-79 Identity = 146/154 (94.81%), Postives = 150/154 (97.40%), Query Frame = 0
BLAST of ClCG01G019070 vs. ExPASy TrEMBL
Match: A0A6J1BWI1 (E3 ubiquitin-protein ligase RHA2B-like OS=Momordica charantia OX=3673 GN=LOC111005363 PE=4 SV=1) HSP 1 Score: 300.4 bits (768), Expect = 4.8e-78 Identity = 144/154 (93.51%), Postives = 150/154 (97.40%), Query Frame = 0
BLAST of ClCG01G019070 vs. TAIR 10
Match: AT2G01150.1 (RING-H2 finger protein 2B ) HSP 1 Score: 80.1 bits (196), Expect = 2.0e-15 Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 0
BLAST of ClCG01G019070 vs. TAIR 10
Match: AT1G15100.1 (RING-H2 finger A2A ) HSP 1 Score: 77.0 bits (188), Expect = 1.7e-14 Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 0
BLAST of ClCG01G019070 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein ) HSP 1 Score: 71.6 bits (174), Expect = 7.0e-13 Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = 0
BLAST of ClCG01G019070 vs. TAIR 10
Match: AT5G45290.1 (RING/U-box superfamily protein ) HSP 1 Score: 70.1 bits (170), Expect = 2.0e-12 Identity = 29/70 (41.43%), Postives = 38/70 (54.29%), Query Frame = 0
BLAST of ClCG01G019070 vs. TAIR 10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2 ) HSP 1 Score: 68.9 bits (167), Expect = 4.6e-12 Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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