ClCG01G019060 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG01G019060
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr01: 33478125 .. 33478340 (-)
RNA-Seq ExpressionClCG01G019060
SyntenyClCG01G019060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCCATAGGAGCTAGCTGCGCTCGGGTTTATGTAATGAAAAAGAAAGCAGAGGAAAAACTACAGAGGATGGAGCAGGAGAGATCCGGCAGGAGAGAAGACTCCGTCAAACCTCCTAAAACTGCCCATCACGGCGGCGCTGTCACCGGCAAATCCAGTAAAAAAGTCTATCCGGGCACCATATTTGGGGTTCCGGCGACCTCTAATTCTTGA

mRNA sequence

ATGTCCTCCATAGGAGCTAGCTGCGCTCGGGTTTATGTAATGAAAAAGAAAGCAGAGGAAAAACTACAGAGGATGGAGCAGGAGAGATCCGGCAGGAGAGAAGACTCCGTCAAACCTCCTAAAACTGCCCATCACGGCGGCGCTGTCACCGGCAAATCCAGTAAAAAAGTCTATCCGGGCACCATATTTGGGGTTCCGGCGACCTCTAATTCTTGA

Coding sequence (CDS)

ATGTCCTCCATAGGAGCTAGCTGCGCTCGGGTTTATGTAATGAAAAAGAAAGCAGAGGAAAAACTACAGAGGATGGAGCAGGAGAGATCCGGCAGGAGAGAAGACTCCGTCAAACCTCCTAAAACTGCCCATCACGGCGGCGCTGTCACCGGCAAATCCAGTAAAAAAGTCTATCCGGGCACCATATTTGGGGTTCCGGCGACCTCTAATTCTTGA

Protein sequence

MSSIGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTAHHGGAVTGKSSKKVYPGTIFGVPATSNS
Homology
BLAST of ClCG01G019060 vs. NCBI nr
Match: KAA0036273.1 (hypothetical protein E6C27_scaffold18G00720 [Cucumis melo var. makuwa] >TYK12667.1 hypothetical protein E5676_scaffold255G002550 [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 2.2e-23
Identity = 64/74 (86.49%), Postives = 68/74 (91.89%), Query Frame = 0

Query: 1  MSSIGASCARVYVMKKKAEEKLQRMEQERSGRRED--SVKPPKTAHH-GGAVTGKSSKKV 60
          MSS+GASCARVYVMKKKAEEKLQRMEQERSGRRED  SVKPPKTAHH GG + GKSSKKV
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDNNSVKPPKTAHHGGGGIAGKSSKKV 60

Query: 61 YPGTIFGVPATSNS 72
          +PGT+FGVP TSNS
Sbjct: 61 HPGTVFGVPPTSNS 74

BLAST of ClCG01G019060 vs. NCBI nr
Match: KGN48780.1 (hypothetical protein Csa_002943 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 4.8e-23
Identity = 61/72 (84.72%), Postives = 67/72 (93.06%), Query Frame = 0

Query: 1  MSSIGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTAHH-GGAVTGKSSKKVYP 60
          MSS+GASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKT+HH  G + GKSSKKV+P
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60

Query: 61 GTIFGVPATSNS 72
          GT+FG+ ATSNS
Sbjct: 61 GTLFGLQATSNS 72

BLAST of ClCG01G019060 vs. NCBI nr
Match: KAG6594855.1 (hypothetical protein SDJN03_11408, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.1 bits (261), Expect = 2.5e-19
Identity = 54/71 (76.06%), Postives = 61/71 (85.92%), Query Frame = 0

Query: 1  MSSIGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTAHHGGAVTGKSSKKVYPG 60
          MSSIGASCARVYVMKKK EEKLQRMEQE++GRRED VKP KTAHHGGA  G + KKV+PG
Sbjct: 1  MSSIGASCARVYVMKKKVEEKLQRMEQEKAGRREDLVKPSKTAHHGGAFAGITCKKVHPG 60

Query: 61 TIFGVPATSNS 72
          T+  VPA++ S
Sbjct: 61 TVISVPASNIS 71

BLAST of ClCG01G019060 vs. NCBI nr
Match: KAG6604014.1 (hypothetical protein SDJN03_04623, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.9 bits (250), Expect = 4.6e-18
Identity = 51/73 (69.86%), Postives = 62/73 (84.93%), Query Frame = 0

Query: 1  MSSIGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTAHH--GGAVTGKSSKKVY 60
          MSS+GA+CARVYVM+KK EEKL+RMEQER+GR ED+VKPPK+AHH  GG + GK+ KKV+
Sbjct: 1  MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAHHHAGGGIAGKACKKVH 60

Query: 61 PGTIFGVPATSNS 72
          PG +F V A SNS
Sbjct: 61 PGNVFAVSANSNS 73

BLAST of ClCG01G019060 vs. NCBI nr
Match: KAF3969578.1 (hypothetical protein CMV_006642 [Castanea mollissima])

HSP 1 Score: 53.5 bits (127), Expect = 8.5e-04
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 1  MSSIGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTAHHGGAVTGKSSKKVYPG 60
          MSSI  SCA VYVMKK+ +EKL+RME+ER+ R E S +  K +   G+  G+ SKKV+PG
Sbjct: 1  MSSIAFSCAEVYVMKKRQKEKLKRMEEERANRGESSEEERKVS---GSTLGR-SKKVHPG 56

BLAST of ClCG01G019060 vs. ExPASy TrEMBL
Match: A0A5A7T065 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002550 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.0e-23
Identity = 64/74 (86.49%), Postives = 68/74 (91.89%), Query Frame = 0

Query: 1  MSSIGASCARVYVMKKKAEEKLQRMEQERSGRRED--SVKPPKTAHH-GGAVTGKSSKKV 60
          MSS+GASCARVYVMKKKAEEKLQRMEQERSGRRED  SVKPPKTAHH GG + GKSSKKV
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDNNSVKPPKTAHHGGGGIAGKSSKKV 60

Query: 61 YPGTIFGVPATSNS 72
          +PGT+FGVP TSNS
Sbjct: 61 HPGTVFGVPPTSNS 74

BLAST of ClCG01G019060 vs. ExPASy TrEMBL
Match: A0A0A0KGB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500720 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23
Identity = 61/72 (84.72%), Postives = 67/72 (93.06%), Query Frame = 0

Query: 1  MSSIGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTAHH-GGAVTGKSSKKVYP 60
          MSS+GASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKT+HH  G + GKSSKKV+P
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60

Query: 61 GTIFGVPATSNS 72
          GT+FG+ ATSNS
Sbjct: 61 GTLFGLQATSNS 72

BLAST of ClCG01G019060 vs. ExPASy TrEMBL
Match: A0A2N9EUS9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6201 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.3e-05
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 0

Query: 1  MSSIGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTAHHGGAVTGKSSKKVYPG 60
          MSSIGASCA +YVM+K+ +EKL+RME+ER  + E SV+  K +   G+  G+ SKKV+PG
Sbjct: 1  MSSIGASCAEIYVMRKRQKEKLKRMEEERVRKGESSVEESKVS---GSTIGR-SKKVHPG 56

BLAST of ClCG01G019060 vs. ExPASy TrEMBL
Match: A0A2P5CW36 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_117820 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.4e-04
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 0

Query: 1  MSSIGASCARVYVMKKKAEEKLQRMEQERS--GRREDSVKPPKTAHHGGAVTGKSSKKVY 60
          MSSIGASCA VYVM+K+ +EK++RME+ER+  G  +D+         GG+ T   SKK++
Sbjct: 1  MSSIGASCAGVYVMQKRQKEKMERMEEERARRGESQDNKVAGSGRSGGGSNTLGRSKKIH 60

Query: 61 PGTIFG 65
          PG   G
Sbjct: 61 PGNFPG 66

BLAST of ClCG01G019060 vs. ExPASy TrEMBL
Match: A0A2P5BZF9 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_303210 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.4e-04
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 0

Query: 1  MSSIGASCARVYVMKKKAEEKLQRMEQERS--GRREDSVKPPKTAHHGGAVTGKSSKKVY 60
          MSSIGASCA VYVM+K+ +EK++RME+ER+  G  +D+         G + T   SKKV+
Sbjct: 1  MSSIGASCAGVYVMQKRQKEKMERMEEERARRGESQDNKVAGSGGSGGASNTFGRSKKVH 60

Query: 61 PGTIFGVPAT 69
          PG   G  +T
Sbjct: 61 PGKFPGAEST 70

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0036273.12.2e-2386.49hypothetical protein E6C27_scaffold18G00720 [Cucumis melo var. makuwa] >TYK12667... [more]
KGN48780.14.8e-2384.72hypothetical protein Csa_002943 [Cucumis sativus][more]
KAG6594855.12.5e-1976.06hypothetical protein SDJN03_11408, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6604014.14.6e-1869.86hypothetical protein SDJN03_04623, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF3969578.18.5e-0455.00hypothetical protein CMV_006642 [Castanea mollissima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T0651.0e-2386.49Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KGB82.3e-2384.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500720 PE=4 SV=1[more]
A0A2N9EUS96.3e-0555.00Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6201 PE=4 SV=1[more]
A0A2P5CW365.4e-0448.48Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_117820 PE... [more]
A0A2P5BZF95.4e-0447.14Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_303210 PE=4 SV... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 8..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..71
NoneNo IPR availablePANTHERPTHR34950OS04G0457400 PROTEINcoord: 1..66
NoneNo IPR availablePANTHERPTHR34950:SF2BNAC01G00560D PROTEINcoord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G019060.1ClCG01G019060.1mRNA