ClCG01G017930 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG01G017930
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionEpidermal patterning factor-like protein
LocationCG_Chr01: 32450547 .. 32452299 (+)
RNA-Seq ExpressionClCG01G017930
SyntenyClCG01G017930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAACAAACCCTGAATCTCATATACTCCATGGGCTGTTTAAAGAGCAGAAGCCCAAATAATAATATAATGTGGTAAAGTAAACCAATGAAGAGGATGCAATAATTATATTGTTGGAGGGTATGTCAGCAATTGACAAATGACAGGCCAATTCATGTTAGCCAAAATCTTGTAGTCACTCTCTTGCTTGGGAAGAAGAAAGGATATGGATATGGCGTGATTAGGTGGGAGTGTTCAGAAACAAAATCAGAAGGAAACTCACAAGAAAACCCAAATTCCAAAAGTTGAATTTAAACAAATATACAAGTAAAAGAAGGAAGAAGAGAAAGGGAAACGAAAACGAAATCCCACTACTCTCACACAGCTGCCATTGCTGATTGCTCTGCTCACATCTGGTTAGCAGCATTTTGGAGCATTAGCAAAATTTTGCTTCCTTCTTTCTCTTCTCTGTCCTCAATTATTTGTTTTTGCAAATTACAAACCCCTTTTCCCAGGAATTTTATTTTCTGTTGGGTTAATGGTTTTTGGTGGCTCTTCTTTCGAGTTCTGCACTTTTCGGTACTCTCTCTTCTTTCTTTCTTTTTCATTTTTTTTTTTTTTTGCCTTCCACGTTCCATCATCTCAAATATCTTTCCCAGACTCAGACAGATTCACAGCAAATTATATTATACACATTTACACGTACCAGCAGCATAGAGTTCAAATTCAGAGGCTAATCTCATCCATTCTGATTCTGATTTAACTCACACTTCATTCCTTCACCCACTTTTTTCTTTCTATCTGATTAGCTTTTTCGCTTGGTTTTATTTTTAACCTCCCTTTCTTCAGGGAGAATTTCCCTGTCTCTTTCACACACTGCCCTCTCTCTCTGTGAGAAGAAAAGGAACAATGGTGTGCGAGTGTAACAACAATGGCGTCATTGGCTCGCGCAGTAGAATCTTGTGTTCGACTCTTTCTCTTCTCTTTTTTCTGATTTTGGCATCCACCCAGATGAGATTTATGGCTGAAGGTAACTGGGTATCTTTTGAAATTTCAAAAAACAGTTCAAAACTAGATTTTTATTCTTCCAACTTCAATTTCAGTTAAACTGAATCGTTTTTTTTCCTTGCAGGCAGATTGATTTCAAGGAGTGGCAAGGTCAGTCCACAAACCATCTCTTTCCTTCCTTTCTCAAATACTTTTACATTTTCTGTGAAAAGCTTAATTAATCGAGAAGAATAATTTTGGGTTTCTGTTTTTTGGTGCATTGGGATAGACAGTGAATAATGAAGATAAAATGGTATTGAGAGGACAAATTGGGTCGAGGCCTCCAAAATGTGAGAGAAGATGCAGCTGGTGTGGACATTGTGAGGCCATCCAAGTTCCAGCAAACCCACAAAAATCAGCAACTAAAAACTCTTCGACCATGAACAACATAGCTTATGCTAGAGATGAAGCCTCCAATTACAAACCCATGAGCTGGAAATGCAAATGTGGAAGCTTAATCTTCAATCCTTAACTATTTAATAGAATCCCTCCTCTCAATCTCTTCCTCTGTAAATTAGTGATTATATATGATTGTTAATTTCTTTAACTTAACCACCCTGATTTCTCTATCTCTCTTTCTTTTTAATTTGTACTGCAATTTGATAAGATAATGAAGAGTAGTATTATGATTGAATTGAACAAATTCCTTTCATATTATTGTTGGTGTCAACTTGGTAAATTGAATTAGAAAAAGACACAAAGAGATAGAAAAGGAAGTGGGTTGTGA

mRNA sequence

ATGCAACAAACCCTGAATCTCATATACTCCATGGGCTGTTTAAAGAGCAGAAGCCCAAATAATAATATAATGTGGCCAATTCATGTTAGCCAAAATCTTGTAGTCACTCTCTTGCTTGGGAAGAAGAAAGGATATGGATATGGCGTGATTAGGAATTTTATTTTCTGTTGGGTTAATGGTTTTTGGTGGCTCTTCTTTCGAGTTCTGCACTTTTCGGGAGAATTTCCCTGTCTCTTTCACACACTGCCCTCTCTCTCTGTGAGAAGAAAAGGAACAATGGTGTGCGAGTGTAACAACAATGGCGTCATTGGCTCGCGCAGTAGAATCTTGTGTTCGACTCTTTCTCTTCTCTTTTTTCTGATTTTGGCATCCACCCAGATGAGATTTATGGCTGAAGGTAACTGGGTATCTTTTGAAATTTCAAAAAACAGTTCAAAACTAGATTTTTATTCTTCCAACTTCAATTTCAGTTAAACTGAATCGTTTTTTTTCCTTGCAGGCAGATTGATTTCAAGGAGTGGCAAGACAGTGAATAATGAAGATAAAATGGTATTGAGAGGACAAATTGGGTCGAGGCCTCCAAAATGTGAGAGAAGATGCAGCTGGTGTGGACATTGTGAGGCCATCCAAGTTCCAGCAAACCCACAAAAATCAGCAACTAAAAACTCTTCGACCATGAACAACATAGCTTATGCTAGAGATGAAGCCTCCAATTACAAACCCATGAGCTGGAAATGCAAATGTGGAAGCTTAATCTTCAATCCTTAACTATTTAATAGAATCCCTCCTCTCAATCTCTTCCTCTGTAAATTAGTGATTATATATGATTGTTAATTTCTTTAACTTAACCACCCTGATTTCTCTATCTCTCTTTCTTTTTAATTTGTACTGCAATTTGATAAGATAATGAAGAGTAGTATTATGATTGAATTGAACAAATTCCTTTCATATTATTGTTGGTGTCAACTTGGTAAATTGAATTAGAAAAAGACACAAAGAGATAGAAAAGGAAGTGGGTTGTGA

Coding sequence (CDS)

ATGCAACAAACCCTGAATCTCATATACTCCATGGGCTGTTTAAAGAGCAGAAGCCCAAATAATAATATAATGTGGCCAATTCATGTTAGCCAAAATCTTGTAGTCACTCTCTTGCTTGGGAAGAAGAAAGGATATGGATATGGCGTGATTAGGAATTTTATTTTCTGTTGGGTTAATGGTTTTTGGTGGCTCTTCTTTCGAGTTCTGCACTTTTCGGGAGAATTTCCCTGTCTCTTTCACACACTGCCCTCTCTCTCTGTGAGAAGAAAAGGAACAATGGTGTGCGAGTGTAACAACAATGGCGTCATTGGCTCGCGCAGTAGAATCTTGTGTTCGACTCTTTCTCTTCTCTTTTTTCTGATTTTGGCATCCACCCAGATGAGATTTATGGCTGAAGGTAACTGGGTATCTTTTGAAATTTCAAAAAACAGTTCAAAACTAGATTTTTATTCTTCCAACTTCAATTTCAGTTAA

Protein sequence

MQQTLNLIYSMGCLKSRSPNNNIMWPIHVSQNLVVTLLLGKKKGYGYGVIRNFIFCWVNGFWWLFFRVLHFSGEFPCLFHTLPSLSVRRKGTMVCECNNNGVIGSRSRILCSTLSLLFFLILASTQMRFMAEGNWVSFEISKNSSKLDFYSSNFNFS
Homology
[Close]
BLAST of ClCG01G017930 vs. NCBI nr
Match: XP_023518504.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 81.3 bits (199), Expect = 8.4e-12
Identity = 43/51 (84.31%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 83  PSLSVRRKGTMVCECNNNGVIGSRSRILCSTLSLLFFLILASTQMRFMAEG 134
           P LSVR K  M CECNNNGVIG RSRILC+TLS LFFLILASTQMRFMAEG
Sbjct: 21  PHLSVRTKRKMGCECNNNGVIG-RSRILCATLSFLFFLILASTQMRFMAEG 70

[Close]
BLAST of ClCG01G017930 vs. NCBI nr
Match: XP_023003266.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Cucurbita maxima])

HSP 1 Score: 79.0 bits (193), Expect = 4.2e-11
Identity = 42/55 (76.36%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 83  PSLSVRRKGTMVCECNNNGVIGSRSRILCSTLSLLFFLILASTQMRFMAEGNWVS 138
           PSLSVR K  M CECNNNGVIG R RILC+T+S LF LILASTQMRFMAEG  +S
Sbjct: 20  PSLSVRTKRKMGCECNNNGVIG-RCRILCATVSFLFLLILASTQMRFMAEGRSIS 73

[Close]
BLAST of ClCG01G017930 vs. NCBI nr
Match: XP_022963149.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita moschata])

HSP 1 Score: 78.6 bits (192), Expect = 5.5e-11
Identity = 50/84 (59.52%), Postives = 56/84 (66.67%), Query Frame = 0 

Query: 54  IFCWVNGFWWLFFRVLHFSGEFPCLFHTLPSLSVRRKGTMVCECNNNGVIGSRSRILCST 113
           +FC +  F+ LFFRVL  S  F             RK  M CECNNNGVIG RSRILC+T
Sbjct: 29  LFC-LTLFFRLFFRVLRSSAIF------------ERKEKMGCECNNNGVIG-RSRILCAT 88

Query: 114 LSLLFFLILASTQMRFMAEGNWVS 138
           +S LFFLILASTQMRFMAEG  +S
Sbjct: 89  VSFLFFLILASTQMRFMAEGRSIS 98

[Close]
BLAST of ClCG01G017930 vs. NCBI nr
Match: KAG6594944.1 (EPIDERMAL PATTERNING FACTOR-like protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-09
Identity = 39/46 (84.78%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 88  RRKGTMVCECNNNGVIGSRSRILCSTLSLLFFLILASTQMRFMAEG 134
           R K  M CECNNNGVIG RSRILC+TLS LFFLILASTQMRFMAEG
Sbjct: 92  RTKRKMGCECNNNGVIG-RSRILCATLSFLFFLILASTQMRFMAEG 136

[Close]
BLAST of ClCG01G017930 vs. NCBI nr
Match: XP_038882801.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X2 [Benincasa hispida])

HSP 1 Score: 72.4 bits (176), Expect = 3.9e-09
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 93  MVCECNNNGVIGSRSRILCSTLSLLFFLILASTQMRFMAEGNWVSFEIS 142
           M CEC NNGV+GSRSRILCST+SLLFFLILASTQMRFMAEG  +S  ++
Sbjct: 1   MGCEC-NNGVMGSRSRILCSTVSLLFFLILASTQMRFMAEGRLISRNVN 48

[Close]
BLAST of ClCG01G017930 vs. ExPASy TrEMBL
Match: A0A6J1KNP8 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111496927 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.0e-11
Identity = 42/55 (76.36%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 83  PSLSVRRKGTMVCECNNNGVIGSRSRILCSTLSLLFFLILASTQMRFMAEGNWVS 138
           PSLSVR K  M CECNNNGVIG R RILC+T+S LF LILASTQMRFMAEG  +S
Sbjct: 20  PSLSVRTKRKMGCECNNNGVIG-RCRILCATVSFLFLLILASTQMRFMAEGRSIS 73

[Close]
BLAST of ClCG01G017930 vs. ExPASy TrEMBL
Match: A0A6J1HJ94 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111463445 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.6e-11
Identity = 50/84 (59.52%), Postives = 56/84 (66.67%), Query Frame = 0 

Query: 54  IFCWVNGFWWLFFRVLHFSGEFPCLFHTLPSLSVRRKGTMVCECNNNGVIGSRSRILCST 113
           +FC +  F+ LFFRVL  S  F             RK  M CECNNNGVIG RSRILC+T
Sbjct: 29  LFC-LTLFFRLFFRVLRSSAIF------------ERKEKMGCECNNNGVIG-RSRILCAT 88

Query: 114 LSLLFFLILASTQMRFMAEGNWVS 138
           +S LFFLILASTQMRFMAEG  +S
Sbjct: 89  VSFLFFLILASTQMRFMAEGRSIS 98

[Close]
BLAST of ClCG01G017930 vs. ExPASy TrEMBL
Match: A0A0A0KGK0 (Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G497000 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.1e-08
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 93  MVCECNNNGVIGSRSR-ILCSTLSLLFFLILASTQMRFMAEGNWVS 138
           M CEC NNGVIG RSR ILC  +SLLFFLILASTQMRFMAEG ++S
Sbjct: 1   MGCECINNGVIGRRSRIILCPIVSLLFFLILASTQMRFMAEGRFIS 46

[Close]
BLAST of ClCG01G017930 vs. ExPASy TrEMBL
Match: A0A6J1KLZ1 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111496927 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 7.9e-08
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 0 

Query: 93  MVCECNNNGVIGSRSRILCSTLSLLFFLILASTQMRFMAEGNWVS 138
           M CECNNNGVIG R RILC+T+S LF LILASTQMRFMAEG  +S
Sbjct: 1   MGCECNNNGVIG-RCRILCATVSFLFLLILASTQMRFMAEGRSIS 44

[Close]
BLAST of ClCG01G017930 vs. ExPASy TrEMBL
Match: A0A6J1BSQ3 (Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC111005366 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-07
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 93  MVCECNNNGVIGSRSRILCSTLSLLFFLILASTQMRFMAEGNWV 137
           M CECNNNGVIG RSRILC+T+  LF LILASTQMRFMAEG  V
Sbjct: 1   MSCECNNNGVIG-RSRILCATVPFLFLLILASTQMRFMAEGRLV 43

The following BLAST results are available for this feature:
BLAST of ClCG01G017930 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023518504.18.4e-1284.31EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Cucurbita pepo subsp. pep... [more]
XP_023003266.14.2e-1176.36EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Cucurbita maxima][more]
XP_022963149.15.5e-1159.52EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita moschata][more]
KAG6594944.11.8e-0984.78EPIDERMAL PATTERNING FACTOR-like protein 2, partial [Cucurbita argyrosperma subs... [more]
XP_038882801.13.9e-0977.55EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X2 [Benincasa hispida][more]
BLAST of ClCG01G017930 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG01G017930 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KNP82.0e-1176.36Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11149... [more]
A0A6J1HJ942.6e-1159.52Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A0A0KGK06.1e-0878.26Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G497... [more]
A0A6J1KLZ17.9e-0877.78Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11149... [more]
A0A6J1BSQ31.0e-0779.55Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC11... [more]
BLAST of ClCG01G017930 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G017930.2ClCG01G017930.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010052 guard cell differentiation
cellular_component GO:0005576 extracellular region
cellular_component GO:0016021 integral component of membrane