ClCG01G017790 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G017790
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein
Location	CG_Chr01: 32270916 .. 32271341 (-)
RNA-Seq Expression	ClCG01G017790
Synteny	ClCG01G017790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCATAGAAAAGTCCTTTCACAAGGAAATGTTCCCTTCTCCTGGGAGGAAAGCCCATTCTGCTTCAGGGATTTCCAAGCCCTTGCCTTACATTCCTCCCCACTGCCACCGCCACATATCTCTCAATTCGACGTCGTTTCCAAGATTCCTCCACCGCCGTGTCGGCTTCCTCCCCGTTCGGTTACAAACGCCGTTTCTGCCAAGGAGGAAGACGACCCTTTTCTCGCGGCCTATAAGGAGTGTACTAAAAGTGCCAAAAATGGAAAATTTGTGCCCAACACAGGAAACAAAGGAGCTGTTGCTGTTGTGAAGAAGAGTAAGTTTTTTGGTTTTTCTTGTAAAAGTATTGATTCTTGTGAAATTAGAGATGCTAGTTTCTTCAAGCTTCGTAGAGACAGAATTCATGTCTCAACTTGGAAATAA

mRNA sequence

ATGAATCATAGAAAAGTCCTTTCACAAGGAAATGTTCCCTTCTCCTGGGAGGAAAGCCCATTCTGCTTCAGGGATTTCCAAGCCCTTGCCTTACATTCCTCCCCACTGCCACCGCCACATATCTCTCAATTCGACGTCGTTTCCAAGATTCCTCCACCGCCGTGTCGGCTTCCTCCCCGTTCGGTTACAAACGCCGTTTCTGCCAAGGAGGAAGACGACCCTTTTCTCGCGGCCTATAAGGAGTGTACTAAAAGTGCCAAAAATGGAAAATTTGTGCCCAACACAGGAAACAAAGGAGCTGTTGCTGTTGTGAAGAAGAGTAAGTTTTTTGGTTTTTCTTGTAAAAGTATTGATTCTTGTGAAATTAGAGATGCTAGTTTCTTCAAGCTTCGTAGAGACAGAATTCATGTCTCAACTTGGAAATAA

Coding sequence (CDS)

ATGAATCATAGAAAAGTCCTTTCACAAGGAAATGTTCCCTTCTCCTGGGAGGAAAGCCCATTCTGCTTCAGGGATTTCCAAGCCCTTGCCTTACATTCCTCCCCACTGCCACCGCCACATATCTCTCAATTCGACGTCGTTTCCAAGATTCCTCCACCGCCGTGTCGGCTTCCTCCCCGTTCGGTTACAAACGCCGTTTCTGCCAAGGAGGAAGACGACCCTTTTCTCGCGGCCTATAAGGAGTGTACTAAAAGTGCCAAAAATGGAAAATTTGTGCCCAACACAGGAAACAAAGGAGCTGTTGCTGTTGTGAAGAAGAGTAAGTTTTTTGGTTTTTCTTGTAAAAGTATTGATTCTTGTGAAATTAGAGATGCTAGTTTCTTCAAGCTTCGTAGAGACAGAATTCATGTCTCAACTTGGAAATAA

Protein sequence

MNHRKVLSQGNVPFSWEESPFCFRDFQALALHSSPLPPPHISQFDVVSKIPPPPCRLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKFFGFSCKSIDSCEIRDASFFKLRRDRIHVSTWK

Homology

[Close]

BLAST of ClCG01G017790 vs. NCBI nr
Match: KAA0036397.1 (hypothetical protein E6C27_scaffold18G001980 [Cucumis melo var. makuwa] >TYK12793.1 hypothetical protein E5676_scaffold255G003820 [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 2.5e-31
Identity = 96/153 (62.75%), Postives = 102/153 (66.67%), Query Frame = 0


Query: 2   NHRKVLSQGNVPFSWEESPFC--FRDFQALALH-----SSPLPPPHISQFD--VVSKIPP 61
           +HRKVLSQGN+    +  P    FRDFQALALH     SS    P  SQFD  V SKIPP
Sbjct: 4   HHRKVLSQGNIIPHHQNPPGLSKFRDFQALALHLHSHSSSTYKNPDASQFDHLVSSKIPP 63

Query: 62  PPCRLPPRSVTNAVSAKEE-DDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKFF- 121
           PPCR PP    NA SAKEE DDPFL AYKECTKS KN K + N G      VVKKSKFF 
Sbjct: 64  PPCRFPP---YNAASAKEELDDPFLVAYKECTKSVKN-KGINNLG------VVKKSKFFF 123

Query: 122 -GFSCKSIDSCEIRDA-SFFKLRRDRIHVSTWK 142
             FSCK+IDSC+I D  SFFKL RD IHVSTWK
Sbjct: 124 GRFSCKTIDSCDITDQNSFFKLPRDTIHVSTWK 146

[Close]

BLAST of ClCG01G017790 vs. NCBI nr
Match: KAG6594957.1 (hypothetical protein SDJN03_11510, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026918.1 hypothetical protein SDJN02_10925, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.0 bits (367), Expect = 2.5e-31
Identity = 83/149 (55.70%), Postives = 96/149 (64.43%), Query Frame = 0


Query: 1   MNHRKVLSQGNVPFSWEESP-----FCFRDFQALALHSSPLPPPHISQFDVVSKI-PPPP 60
           M+H+K+ S+GNVPFSWEE P      CF+D Q L LHS        S+FD V KI PPPP
Sbjct: 1   MSHKKLYSKGNVPFSWEEKPGISKKICFQDVQPLPLHS----VHEDSEFDDVGKIPPPPP 60

Query: 61  CRLPPRSVTNAVS--AKEEDDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKFFGF 120
           CR+ P S+ NA +  ++ E+DPFL AYKECTKS K GK            V KKSK FGF
Sbjct: 61  CRVQPCSLRNASTKGSRWEEDPFLEAYKECTKSVKKGKL-----------VAKKSKLFGF 120

Query: 121 SCKSIDSCEIRDASFFKLRRDRIHVSTWK 142
            CKS DSCEIRDAS FKL RD I V +WK
Sbjct: 121 LCKSFDSCEIRDASVFKLGRDSIRVLSWK 134

[Close]

BLAST of ClCG01G017790 vs. NCBI nr
Match: KGN48633.1 (hypothetical protein Csa_003745 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 2.5e-31
Identity = 96/151 (63.58%), Postives = 103/151 (68.21%), Query Frame = 0


Query: 3   HRKVLSQGNVPFSWEESP---FCFRDFQALA--LHSSPL--PPPHISQFD--VVSKIPPP 62
           HRK+LSQGN+     ++P     FRDFQALA  LHSS +   P   SQFD  V SKIPPP
Sbjct: 5   HRKLLSQGNIIPHHNQNPPGVSKFRDFQALALHLHSSSIYKNPDGASQFDHLVSSKIPPP 64

Query: 63  PCRLPPRSVTNAVSAKEE-DDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKF-FG 122
           PCRLPP    NAVSAKEE DDPFL AYKECTKS K      N G    V VVKKSKF FG
Sbjct: 65  PCRLPP-PCNNAVSAKEELDDPFLLAYKECTKSVK------NKGINNDVGVVKKSKFLFG 124

Query: 123 -FSCKSIDSCEIRDASFFKLRRDRIHVSTWK 142
            FSCK+I SC+I D SFFKL RD IHVSTWK
Sbjct: 125 RFSCKTIHSCDITDNSFFKLPRDTIHVSTWK 148

[Close]

BLAST of ClCG01G017790 vs. NCBI nr
Match: KAG6604109.1 (hypothetical protein SDJN03_04718, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 134.8 bits (338), Expect = 5.8e-28
Identity = 79/113 (69.91%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 1   MNHRKVLSQGNVPFSWEESP----FCFRDFQALALHSSPLPPPH--ISQFDVVSKIPPPP 60
           MNHRKVLSQ N+PFSWE++P    F FRDFQALAL  SP    H   S+FDVVSKIPPPP
Sbjct: 1   MNHRKVLSQRNLPFSWEQNPARSKFYFRDFQALALQPSPSSTYHRGDSEFDVVSKIPPPP 60

Query: 61  CRLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKS 108
            R  PRS+ NA SAK EDDPFL AYKECTKS KNG FV   GNKGA AV KKS
Sbjct: 61  YRQQPRSIRNA-SAK-EDDPFLMAYKECTKSVKNGSFV-ERGNKGAAAVSKKS 110

[Close]

BLAST of ClCG01G017790 vs. NCBI nr
Match: EXC12618.1 (hypothetical protein L484_012996 [Morus notabilis])

HSP 1 Score: 103.2 bits (256), Expect = 1.9e-18
Identity = 65/155 (41.94%), Postives = 84/155 (54.19%), Query Frame = 0


Query: 1   MNHRKVLSQGNVPFSWEESP--------FCFRDFQALAL---HSSPLPPPHISQFDVVS- 60
           M HRKV SQG++PF WE+ P         C +D+++ AL    S   PP    QF ++S 
Sbjct: 1   MTHRKVHSQGSIPFLWEDKPGISKVTKQDCAKDYRSQALDLTSSKSSPPSKAQQFSLLSD 60

Query: 61  ------------KIPPPPC-RLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPNT 120
                       KIPPPPC   PP   ++A   + ++DPFL AYKECTK  K GK   N 
Sbjct: 61  GSKLVSATNDLLKIPPPPCLSQPPSRSSSAKGLRWQEDPFLLAYKECTKPVKKGK--DNE 120

Query: 121 GNKGAVAVVKKSKFFGFSCKSIDSCEIRDASFFKL 131
            NK    V+ KS F  FSCK  +SCE+R+ +F KL
Sbjct: 121 DNKKRSKVIMKSMFMYFSCK--NSCEVREDNFIKL 151

[Close]

BLAST of ClCG01G017790 vs. ExPASy TrEMBL
Match: A0A5D3CLL9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003820 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.2e-31
Identity = 96/153 (62.75%), Postives = 102/153 (66.67%), Query Frame = 0


Query: 2   NHRKVLSQGNVPFSWEESPFC--FRDFQALALH-----SSPLPPPHISQFD--VVSKIPP 61
           +HRKVLSQGN+    +  P    FRDFQALALH     SS    P  SQFD  V SKIPP
Sbjct: 4   HHRKVLSQGNIIPHHQNPPGLSKFRDFQALALHLHSHSSSTYKNPDASQFDHLVSSKIPP 63

Query: 62  PPCRLPPRSVTNAVSAKEE-DDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKFF- 121
           PPCR PP    NA SAKEE DDPFL AYKECTKS KN K + N G      VVKKSKFF 
Sbjct: 64  PPCRFPP---YNAASAKEELDDPFLVAYKECTKSVKN-KGINNLG------VVKKSKFFF 123

Query: 122 -GFSCKSIDSCEIRDA-SFFKLRRDRIHVSTWK 142
             FSCK+IDSC+I D  SFFKL RD IHVSTWK
Sbjct: 124 GRFSCKTIDSCDITDQNSFFKLPRDTIHVSTWK 146

[Close]

BLAST of ClCG01G017790 vs. ExPASy TrEMBL
Match: A0A0A0KGJ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495870 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.2e-31
Identity = 96/151 (63.58%), Postives = 103/151 (68.21%), Query Frame = 0


Query: 3   HRKVLSQGNVPFSWEESP---FCFRDFQALA--LHSSPL--PPPHISQFD--VVSKIPPP 62
           HRK+LSQGN+     ++P     FRDFQALA  LHSS +   P   SQFD  V SKIPPP
Sbjct: 5   HRKLLSQGNIIPHHNQNPPGVSKFRDFQALALHLHSSSIYKNPDGASQFDHLVSSKIPPP 64

Query: 63  PCRLPPRSVTNAVSAKEE-DDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKF-FG 122
           PCRLPP    NAVSAKEE DDPFL AYKECTKS K      N G    V VVKKSKF FG
Sbjct: 65  PCRLPP-PCNNAVSAKEELDDPFLLAYKECTKSVK------NKGINNDVGVVKKSKFLFG 124

Query: 123 -FSCKSIDSCEIRDASFFKLRRDRIHVSTWK 142
            FSCK+I SC+I D SFFKL RD IHVSTWK
Sbjct: 125 RFSCKTIHSCDITDNSFFKLPRDTIHVSTWK 148

[Close]

BLAST of ClCG01G017790 vs. ExPASy TrEMBL
Match: W9RVC8 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012996 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 9.0e-19
Identity = 65/155 (41.94%), Postives = 84/155 (54.19%), Query Frame = 0


Query: 1   MNHRKVLSQGNVPFSWEESP--------FCFRDFQALAL---HSSPLPPPHISQFDVVS- 60
           M HRKV SQG++PF WE+ P         C +D+++ AL    S   PP    QF ++S 
Sbjct: 1   MTHRKVHSQGSIPFLWEDKPGISKVTKQDCAKDYRSQALDLTSSKSSPPSKAQQFSLLSD 60

Query: 61  ------------KIPPPPC-RLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPNT 120
                       KIPPPPC   PP   ++A   + ++DPFL AYKECTK  K GK   N 
Sbjct: 61  GSKLVSATNDLLKIPPPPCLSQPPSRSSSAKGLRWQEDPFLLAYKECTKPVKKGK--DNE 120

Query: 121 GNKGAVAVVKKSKFFGFSCKSIDSCEIRDASFFKL 131
            NK    V+ KS F  FSCK  +SCE+R+ +F KL
Sbjct: 121 DNKKRSKVIMKSMFMYFSCK--NSCEVREDNFIKL 151

[Close]

BLAST of ClCG01G017790 vs. ExPASy TrEMBL
Match: A0A7J6I4Y5 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_017327 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 9.9e-18
Identity = 64/142 (45.07%), Postives = 80/142 (56.34%), Query Frame = 0


Query: 1   MNHRKVLSQGNVPFSWEESPFCFR------DFQALALHSSPLPPPHISQFD---VVSKIP 60
           M+HRKV SQG++PFSWE+ P   +        QAL L SSP P P IS  +   V  KIP
Sbjct: 1   MSHRKVYSQGSIPFSWEDKPGISKVAQQNPRVQALDLTSSPSPSPSISNTNNDLVKLKIP 60

Query: 61  PPPC---RLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSK 120
            PPC     PP    +A   K ++DPFL AYKECTK  K        GN    + V+K+ 
Sbjct: 61  LPPCPTPSQPPSRSNSAKGLKWQEDPFLLAYKECTKPQKK-------GNNKKASKVRKTM 120

Query: 121 FFGFSCKSIDSCEIRDASFFKL 131
           F  FSCKS  SC++R+ +F KL
Sbjct: 121 FMYFSCKS--SCDVRNENFVKL 133

[Close]

BLAST of ClCG01G017790 vs. ExPASy TrEMBL
Match: A0A803PEU5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 9.9e-18
Identity = 64/142 (45.07%), Postives = 80/142 (56.34%), Query Frame = 0


Query: 1   MNHRKVLSQGNVPFSWEESPFCFR------DFQALALHSSPLPPPHISQFD---VVSKIP 60
           M+HRKV SQG++PFSWE+ P   +        QAL L SSP P P IS  +   V  KIP
Sbjct: 1   MSHRKVYSQGSIPFSWEDKPGISKVAQQNPRVQALDLTSSPSPSPSISNTNNDLVKLKIP 60

Query: 61  PPPC---RLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSK 120
            PPC     PP    +A   K ++DPFL AYKECTK  K        GN    + V+K+ 
Sbjct: 61  LPPCPTPSQPPSRSNSAKGLKWQEDPFLLAYKECTKPQKK-------GNNKKASKVRKTM 120

Query: 121 FFGFSCKSIDSCEIRDASFFKL 131
           F  FSCKS  SC++R+ +F KL
Sbjct: 121 FMYFSCKS--SCDVRNENFVKL 133

The following BLAST results are available for this feature:

BLAST of ClCG01G017790 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036397.1	2.5e-31	62.75	hypothetical protein E6C27_scaffold18G001980 [Cucumis melo var. makuwa] >TYK1279...	[more]
KAG6594957.1	2.5e-31	55.70	hypothetical protein SDJN03_11510, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN48633.1	2.5e-31	63.58	hypothetical protein Csa_003745 [Cucumis sativus]	[more]
KAG6604109.1	5.8e-28	69.91	hypothetical protein SDJN03_04718, partial [Cucurbita argyrosperma subsp. sorori...	[more]
EXC12618.1	1.9e-18	41.94	hypothetical protein L484_012996 [Morus notabilis]	[more]

BLAST of ClCG01G017790 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG01G017790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CLL9	1.2e-31	62.75	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KGJ1	1.2e-31	63.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495870 PE=4 SV=1	[more]
W9RVC8	9.0e-19	41.94	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012996 PE=4 SV=1	[more]
A0A7J6I4Y5	9.9e-18	45.07	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_017327 PE=4 SV=1	[more]
A0A803PEU5	9.9e-18	45.07	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of ClCG01G017790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33696:SF3	SUBFAMILY NOT NAMED	coord: 1..131
None	No IPR available	PANTHER	PTHR33696	T22J18.15-RELATED	coord: 1..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G017790.1	ClCG01G017790.1	mRNA