ClCG01G014970 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G014970
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Regulatory particle non-ATPase 10
Location	CG_Chr01: 29271307 .. 29271714 (+)
RNA-Seq Expression	ClCG01G014970
Synteny	ClCG01G014970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGCGGCCGGAGATGAAGGTACCGACCTTGAATCGGACGCGACCATCGAGTTTGATCGACAACTGGACGGTGCCGACGGCCTGGTCCTGATTCAGAGCGGCGCCGTTGTACGGAGAGATTGGAACGGCGTTACCGACGAGGAACGGAGACCAGATGTTGAGATCGTTGTGGCCTTGGTAGGTAGGTTGAATGACGGTACGGAGAGTGATCTGTTGGTTCCGGTAAACGGCGTAGACGTCGAGGCGGTCGTAGTAGATGCCGATCTTGTCGTTAGGGTTCCGGGAGGAGACGGTGACTTGGATACTGGAGGAGATAAAGTTAGCGGCGGTGACATTGAAGATGAAGACGGTGGCGTCTTGGATGATGAATTTGGGCTTTGTAGGCTGAAGAATCGCCCAAATTAG

mRNA sequence

ATGGTAGCGGCCGGAGATGAAGGTACCGACCTTGAATCGGACGCGACCATCGAGTTTGATCGACAACTGGACGGTGCCGACGGCCTGGTCCTGATTCAGAGCGGCGCCGTTGTACGGAGAGATTGGAACGGCGTTACCGACGAGGAACGGAGACCAGATGTTGAGATCGTTGTGGCCTTGGTAGGTAGGTTGAATGACGGTACGGAGAGTGATCTGTTGGTTCCGGTAAACGGCGTAGACGTCGAGGCGGTCGTAGTAGATGCCGATCTTGTCGTTAGGGTTCCGGGAGGAGACGGTGACTTGGATACTGGAGGAGATAAAGTTAGCGGCGGTGACATTGAAGATGAAGACGGTGGCGTCTTGGATGATGAATTTGGGCTTTGTAGGCTGAAGAATCGCCCAAATTAG

Coding sequence (CDS)

ATGGTAGCGGCCGGAGATGAAGGTACCGACCTTGAATCGGACGCGACCATCGAGTTTGATCGACAACTGGACGGTGCCGACGGCCTGGTCCTGATTCAGAGCGGCGCCGTTGTACGGAGAGATTGGAACGGCGTTACCGACGAGGAACGGAGACCAGATGTTGAGATCGTTGTGGCCTTGGTAGGTAGGTTGAATGACGGTACGGAGAGTGATCTGTTGGTTCCGGTAAACGGCGTAGACGTCGAGGCGGTCGTAGTAGATGCCGATCTTGTCGTTAGGGTTCCGGGAGGAGACGGTGACTTGGATACTGGAGGAGATAAAGTTAGCGGCGGTGACATTGAAGATGAAGACGGTGGCGTCTTGGATGATGAATTTGGGCTTTGTAGGCTGAAGAATCGCCCAAATTAG

Protein sequence

MVAAGDEGTDLESDATIEFDRQLDGADGLVLIQSGAVVRRDWNGVTDEERRPDVEIVVALVGRLNDGTESDLLVPVNGVDVEAVVVDADLVVRVPGGDGDLDTGGDKVSGGDIEDEDGGVLDDEFGLCRLKNRPN

Homology

[Close]

BLAST of ClCG01G014970 vs. NCBI nr
Match: TYK04331.1 (hypothetical protein E5676_scaffold21333G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 207.2 bits (526), Expect = 8.7e-50
Identity = 109/135 (80.74%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 1   MVAAGDEGTDLESDATIEFDRQLDGADGLVLIQSGAVVRRDWNGVTDEERRPDVEIVVAL 60
           MV AGDEGTDLESDAT+EF+ QLD  +GL+LI+ GAVV  D NGVTDEE RPDVEIVVAL
Sbjct: 1   MVPAGDEGTDLESDATVEFNGQLDCTNGLILIKGGAVVGGDRNGVTDEEGRPDVEIVVAL 60

Query: 61  VGRLNDGTESDLLVPVNGVDVEAVVVDADLVVRVPGGDGDLDTGGDKVSGGDIEDEDGGV 120
           VGRLN GTESDLLV VNGVDVEAVV+D+DLVV V G DGDLDTGGD+VS GDIE+ DGGV
Sbjct: 61  VGRLNAGTESDLLVTVNGVDVEAVVIDSDLVVGVAGRDGDLDTGGDEVSSGDIEEVDGGV 120

Query: 121 LDDEFGLCRLKNRPN 136
           LDDEFGLCRLKN PN
Sbjct: 121 LDDEFGLCRLKNGPN 135

[Close]

BLAST of ClCG01G014970 vs. NCBI nr
Match: GER45898.1 (regulatory particle non-ATPase 10 [Striga asiatica])

HSP 1 Score: 127.5 bits (319), Expect = 8.8e-26
Identity = 76/135 (56.30%), Postives = 92/135 (68.15%), Query Frame = 0


Query: 1   MVAAGDEGTDLESDATIEFDRQLDGADGLVLIQSGAVVRRDWNGVTDEERRPDVEIVVAL 60
           +V+AGDEG D   DA ++FD + DGA GLVL +  AVV  D + V  +E  PDVEI+VAL
Sbjct: 70  VVSAGDEGADPPLDAAVDFDGEADGAGGLVLGEGDAVVGCDGDVVGVDEGGPDVEILVAL 129

Query: 61  VGRLNDGTESDLLVPVNGVDVEAVVVDADLVVRVPGGDGDLDTGGDKVSGGDIEDEDGGV 120
           V   + G  SDLLV V   D EAVVVD D  VRV  GDGDL+ GGD V GGD+EDEDGGV
Sbjct: 130 VHGGDGGGVSDLLVVVVRADGEAVVVDPDAGVRVVRGDGDLECGGDDVRGGDVEDEDGGV 189

Query: 121 LDDEFGLCRLKNRPN 136
           L+DE G   L++ P+
Sbjct: 190 LEDESGFSGLEDGPH 204

[Close]

BLAST of ClCG01G014970 vs. NCBI nr
Match: RXH76386.1 (hypothetical protein DVH24_019274 [Malus domestica])

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-25
Identity = 74/135 (54.81%), Postives = 90/135 (66.67%), Query Frame = 0


Query: 1   MVAAGDEGTDLESDATIEFDRQLDGADGLVLIQSGAVVRRDWNGVTDEERRPDVEIVVAL 60
           MV  GDEG DL  D  +  D Q +    LVL QS  VVR D +    +ERRPDV+++VAL
Sbjct: 1   MVPTGDEGADLPPDPAVHLDEQKNRPGILVLPQSDGVVRSDGDVGAVDERRPDVDVLVAL 60

Query: 61  VGRLNDGTESDLLVPVNGVDVEAVVVDADLVVRVPGGDGDLDTGGDKVSGGDIEDEDGGV 120
           V R ++  E DLL  V  VDVE VVVDADLVVRV GGDGDL+ GG+ V GG +E EDG V
Sbjct: 61  VYRRDERRERDLLRTVGRVDVEPVVVDADLVVRVSGGDGDLEAGGEDVGGGGVEVEDGDV 120

Query: 121 LDDEFGLCRLKNRPN 136
           L+DE GL  L++ P+
Sbjct: 121 LEDEAGLGGLEDGPH 135

[Close]

BLAST of ClCG01G014970 vs. NCBI nr
Match: KAA8518468.1 (hypothetical protein F0562_015942 [Nyssa sinensis])

HSP 1 Score: 117.5 bits (293), Expect = 9.1e-23
Identity = 70/134 (52.24%), Postives = 87/134 (64.93%), Query Frame = 0


Query: 2   VAAGDEGTDLESDATIEFDRQLDGADGLVLIQSGAVVRRDWNGVTDEERRPDVEIVVALV 61
           V A  E ++  S  +I+ D Q DG  GLVL +  AVVRR  +  + +E RP+V++ VALV
Sbjct: 485 VLASCEASNFPSHPSIDLDYQHDGTGGLVLAEGDAVVRRHRHVRSGDEWRPNVDVFVALV 544

Query: 62  GRLNDGTESDLLVPVNGVDVEAVVVDADLVVRVPGGDGDLDTGGDKVSGGDIEDEDGGVL 121
            R   G   DLLV V  VDVE VVVDADLVVRVP  DGDLD GG+ + GGD+E EDGGVL
Sbjct: 545 SRWYGGVVCDLLVAVASVDVEFVVVDADLVVRVPRVDGDLDVGGEIIGGGDVEGEDGGVL 604

Query: 122 DDEFGLCRLKNRPN 136
            DE     L++ P+
Sbjct: 605 KDEAWFPGLEDGPD 618

[Close]

BLAST of ClCG01G014970 vs. NCBI nr
Match: GER41841.1 (hypothetical protein STAS_18573 [Striga asiatica])

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-22
Identity = 74/135 (54.81%), Postives = 86/135 (63.70%), Query Frame = 0


Query: 1   MVAAGDEGTDLESDATIEFDRQLDGADGLVLIQSGAVVRRDWNGVTDEERRPDVEIVVAL 60
           MVAAGDEGTD   D   + D + DGA GLVL +  AVV  D + V  EER PDVE++VAL
Sbjct: 70  MVAAGDEGTDPPLDPAGDLDGEADGAGGLVLAEGEAVVGCDGDVVAVEERGPDVEVMVAL 129

Query: 61  VGRLNDGTESDLLVPVNGVDVEAVVVDADLVVRVPGGDGDLDTGGDKVSGGDIEDEDGGV 120
           V   + G   DLL  V GV  EAVVVDAD  V V GG      GGD V GGD+E EDGGV
Sbjct: 130 VDGRDGGGVGDLLAVVGGVGGEAVVVDADSGVGVVGG------GGDDVWGGDVEGEDGGV 189

Query: 121 LDDEFGLCRLKNRPN 136
           L+DE GL  L++ P+
Sbjct: 190 LEDESGLVGLEDGPD 198

[Close]

BLAST of ClCG01G014970 vs. ExPASy TrEMBL
Match: A0A5D3BXB8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21333G00010 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 4.2e-50
Identity = 109/135 (80.74%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 1   MVAAGDEGTDLESDATIEFDRQLDGADGLVLIQSGAVVRRDWNGVTDEERRPDVEIVVAL 60
           MV AGDEGTDLESDAT+EF+ QLD  +GL+LI+ GAVV  D NGVTDEE RPDVEIVVAL
Sbjct: 1   MVPAGDEGTDLESDATVEFNGQLDCTNGLILIKGGAVVGGDRNGVTDEEGRPDVEIVVAL 60

Query: 61  VGRLNDGTESDLLVPVNGVDVEAVVVDADLVVRVPGGDGDLDTGGDKVSGGDIEDEDGGV 120
           VGRLN GTESDLLV VNGVDVEAVV+D+DLVV V G DGDLDTGGD+VS GDIE+ DGGV
Sbjct: 61  VGRLNAGTESDLLVTVNGVDVEAVVIDSDLVVGVAGRDGDLDTGGDEVSSGDIEEVDGGV 120

Query: 121 LDDEFGLCRLKNRPN 136
           LDDEFGLCRLKN PN
Sbjct: 121 LDDEFGLCRLKNGPN 135

[Close]

BLAST of ClCG01G014970 vs. ExPASy TrEMBL
Match: A0A0A0KKM0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454480 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.6e-49
Identity = 107/135 (79.26%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 1   MVAAGDEGTDLESDATIEFDRQLDGADGLVLIQSGAVVRRDWNGVTDEERRPDVEIVVAL 60
           MVAAGDEGTD ESDA +EF+ QLDG +GL+LI+ GAVV RD N VTDEE RPDV+IVVAL
Sbjct: 1   MVAAGDEGTDFESDAAVEFNGQLDGTNGLILIKGGAVVGRDGNVVTDEEGRPDVDIVVAL 60

Query: 61  VGRLNDGTESDLLVPVNGVDVEAVVVDADLVVRVPGGDGDLDTGGDKVSGGDIEDEDGGV 120
           VG LN GTESDLLV VNGVDVEAVV+D+DLVVRV G DGDLDTGGD+VSGG+IE+ DGGV
Sbjct: 61  VGWLNAGTESDLLVMVNGVDVEAVVIDSDLVVRVTGIDGDLDTGGDEVSGGEIEEVDGGV 120

Query: 121 LDDEFGLCRLKNRPN 136
           LDDEFGLC LKN PN
Sbjct: 121 LDDEFGLCGLKNGPN 135

[Close]

BLAST of ClCG01G014970 vs. ExPASy TrEMBL
Match: A0A5A7QLV4 (Regulatory particle non-ATPase 10 OS=Striga asiatica OX=4170 GN=STAS_22889 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.3e-26
Identity = 76/135 (56.30%), Postives = 92/135 (68.15%), Query Frame = 0


Query: 1   MVAAGDEGTDLESDATIEFDRQLDGADGLVLIQSGAVVRRDWNGVTDEERRPDVEIVVAL 60
           +V+AGDEG D   DA ++FD + DGA GLVL +  AVV  D + V  +E  PDVEI+VAL
Sbjct: 70  VVSAGDEGADPPLDAAVDFDGEADGAGGLVLGEGDAVVGCDGDVVGVDEGGPDVEILVAL 129

Query: 61  VGRLNDGTESDLLVPVNGVDVEAVVVDADLVVRVPGGDGDLDTGGDKVSGGDIEDEDGGV 120
           V   + G  SDLLV V   D EAVVVD D  VRV  GDGDL+ GGD V GGD+EDEDGGV
Sbjct: 130 VHGGDGGGVSDLLVVVVRADGEAVVVDPDAGVRVVRGDGDLECGGDDVRGGDVEDEDGGV 189

Query: 121 LDDEFGLCRLKNRPN 136
           L+DE G   L++ P+
Sbjct: 190 LEDESGFSGLEDGPH 204

[Close]

BLAST of ClCG01G014970 vs. ExPASy TrEMBL
Match: A0A498HYB9 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_019274 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.6e-26
Identity = 74/135 (54.81%), Postives = 90/135 (66.67%), Query Frame = 0


Query: 1   MVAAGDEGTDLESDATIEFDRQLDGADGLVLIQSGAVVRRDWNGVTDEERRPDVEIVVAL 60
           MV  GDEG DL  D  +  D Q +    LVL QS  VVR D +    +ERRPDV+++VAL
Sbjct: 1   MVPTGDEGADLPPDPAVHLDEQKNRPGILVLPQSDGVVRSDGDVGAVDERRPDVDVLVAL 60

Query: 61  VGRLNDGTESDLLVPVNGVDVEAVVVDADLVVRVPGGDGDLDTGGDKVSGGDIEDEDGGV 120
           V R ++  E DLL  V  VDVE VVVDADLVVRV GGDGDL+ GG+ V GG +E EDG V
Sbjct: 61  VYRRDERRERDLLRTVGRVDVEPVVVDADLVVRVSGGDGDLEAGGEDVGGGGVEVEDGDV 120

Query: 121 LDDEFGLCRLKNRPN 136
           L+DE GL  L++ P+
Sbjct: 121 LEDEAGLGGLEDGPH 135

[Close]

BLAST of ClCG01G014970 vs. ExPASy TrEMBL
Match: A0A5J4ZLG7 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_015942 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 4.4e-23
Identity = 70/134 (52.24%), Postives = 87/134 (64.93%), Query Frame = 0


Query: 2   VAAGDEGTDLESDATIEFDRQLDGADGLVLIQSGAVVRRDWNGVTDEERRPDVEIVVALV 61
           V A  E ++  S  +I+ D Q DG  GLVL +  AVVRR  +  + +E RP+V++ VALV
Sbjct: 485 VLASCEASNFPSHPSIDLDYQHDGTGGLVLAEGDAVVRRHRHVRSGDEWRPNVDVFVALV 544

Query: 62  GRLNDGTESDLLVPVNGVDVEAVVVDADLVVRVPGGDGDLDTGGDKVSGGDIEDEDGGVL 121
            R   G   DLLV V  VDVE VVVDADLVVRVP  DGDLD GG+ + GGD+E EDGGVL
Sbjct: 545 SRWYGGVVCDLLVAVASVDVEFVVVDADLVVRVPRVDGDLDVGGEIIGGGDVEGEDGGVL 604

Query: 122 DDEFGLCRLKNRPN 136
            DE     L++ P+
Sbjct: 605 KDEAWFPGLEDGPD 618

The following BLAST results are available for this feature:

BLAST of ClCG01G014970 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04331.1	8.7e-50	80.74	hypothetical protein E5676_scaffold21333G00010 [Cucumis melo var. makuwa]	[more]
GER45898.1	8.8e-26	56.30	regulatory particle non-ATPase 10 [Striga asiatica]	[more]
RXH76386.1	1.1e-25	54.81	hypothetical protein DVH24_019274 [Malus domestica]	[more]
KAA8518468.1	9.1e-23	52.24	hypothetical protein F0562_015942 [Nyssa sinensis]	[more]
GER41841.1	1.2e-22	54.81	hypothetical protein STAS_18573 [Striga asiatica]	[more]

BLAST of ClCG01G014970 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG01G014970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BXB8	4.2e-50	80.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KKM0	3.6e-49	79.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454480 PE=4 SV=1	[more]
A0A5A7QLV4	4.3e-26	56.30	Regulatory particle non-ATPase 10 OS=Striga asiatica OX=4170 GN=STAS_22889 PE=4 ...	[more]
A0A498HYB9	5.6e-26	54.81	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_019274 PE=4 SV=1	[more]
A0A5J4ZLG7	4.4e-23	52.24	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_015942 PE=4 SV=1	[more]

BLAST of ClCG01G014970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G014970.1	ClCG01G014970.1	mRNA