ClCG01G013960 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G013960
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	histone H2B-like
Location	CG_Chr01: 28150624 .. 28152005 (+)
RNA-Seq Expression	ClCG01G013960
Synteny	ClCG01G013960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCCAAGACGATCACGCAGAATCGTGGGTTCTGTCGTCCGGACTACCACGAGGGTAGTGGAAGAAACTGTACAAGTGGCGGTGGTGGAGAAAGAAAGTCAGGATTTGACTCAAGAACCCGACACTGCCGCAGAAACCGGTGGTGGCGATGGCGGAGAAATGTTTCAGAGGACTGTTCCGGTGGAAGGGAAGACTCCGCCTCCAGAACAGCCCACAACTCTGCCTGCGTCGCAAGATTCTGAGCCGAGAAGGGCAATGGATTCAACCTCGCAGGTCACAGAGGATATCGATGTGGCTCCAAAGACCGACCCCGAGGTCGGGAATGGTAAGAACATCACTATAAATGACAAAAGGATTATAAATATTTTCTCCACATAGTTAGATGGATAGTTATTTGAAGAATTGAAATTATGAGTAAATTTAGAGTGGATTTGAAATACATTTTCAAGTGTTTAATTAAAAAAAAAAAAAAATCAATTTCAACCACCCCTACAAATAAACTTTGAAGTGAAATGTATTTTAAAGAGTTTAAATAAAAATTAACATTTTGAAGAAAAATCTCCCAAGTCGATCCTAACGGACCTTAGAACAATGGAAAGCAATGAAAATGGTATTTTATGAAAACTTTAGTTGAAAATTTTGATTGAACAGAAAGAAAGGAGAAGAAAAAGGGAAAGGAAGGAAAAATGAAGAGAAGGAAAAGAAAAAATAATGGTGGAAGAGAAGGGTACAAGAGGTACGTGTGGAAAGTGTTGAAACAAGTGCATCCGGAGATGGGAATATCGGGGAAAGCCATGTTGATTCTCAACAATTTGATGAACGATATGTTTGAAAGACTAGCTCAAGAAGCAACTCAACTCTCCAAATATACAGGTATCCTTCAATATATCCCATTATCACATAATCTAACCACGAATATAGCAAATTATTTTTATCTATAAATCAATTTTATCATTATTGTCCATCACATTTTGCATTTTCAATATTAACAATCAAATTAAAATTAGCCATTCTCCTACTTTTGTTGCGAGAAGATTTTGAAATCTATTAAATCAAGGGAATGAGAATAATTAAAAAAACTAAAATAAGTATCAACTCTCAGTTAAGTACTAATTGTATTTTAAAATTTTAAAATAATTATTTCAATAGTTATGAAGAATGAGCAGAAATTAATTAAAATTGTTTTGAGGATAATAATAATAGTTGGAATTTGGGAATATTGGTGGGTGATAGGTGGAATGACGCTGTCATCAAGAGAAATACAGGGGGCGGTGAGGTTAGTGTTGCCTGGAGAGCTTGGGAAGCACGCCATCGCTGAGGGAACTAAAGCTGTCTCCAATTATGTATCTTATGATCATAGGAGACCCAAATTACCATAA

mRNA sequence

ATGCCGCCAAGACGATCACGCAGAATCGTGGGTTCTGTCGTCCGGACTACCACGAGGGTAGTGGAAGAAACTGTACAAGTGGCGGTGGTGGAGAAAGAAAGTCAGGATTTGACTCAAGAACCCGACACTGCCGCAGAAACCGGTGGTGGCGATGGCGGAGAAATGTTTCAGAGGACTGTTCCGGTGGAAGGGAAGACTCCGCCTCCAGAACAGCCCACAACTCTGCCTGCGTCGCAAGATTCTGAGCCGAGAAGGGCAATGGATTCAACCTCGCAGGTCACAGAGGATATCGATGTGGCTCCAAAGACCGACCCCGAGGTCGGGAATGAAAGAAAGGAGAAGAAAAAGGGAAAGGAAGGAAAAATGAAGAGAAGGAAAAGAAAAAATAATGGTGGAAGAGAAGGGTACAAGAGGTACGTGTGGAAAGTGTTGAAACAAGTGCATCCGGAGATGGGAATATCGGGGAAAGCCATGTTGATTCTCAACAATTTGATGAACGATATGTTTGAAAGACTAGCTCAAGAAGCAACTCAACTCTCCAAATATACAGTTGGAATTTGGGAATATTGGTGGGTGATAGGTGGAATGACGCTGTCATCAAGAGAAATACAGGGGGCGGTGAGGTTAGTGTTGCCTGGAGAGCTTGGGAAGCACGCCATCGCTGAGGGAACTAAAGCTGTCTCCAATTATGTATCTTATGATCATAGGAGACCCAAATTACCATAA

Coding sequence (CDS)

ATGCCGCCAAGACGATCACGCAGAATCGTGGGTTCTGTCGTCCGGACTACCACGAGGGTAGTGGAAGAAACTGTACAAGTGGCGGTGGTGGAGAAAGAAAGTCAGGATTTGACTCAAGAACCCGACACTGCCGCAGAAACCGGTGGTGGCGATGGCGGAGAAATGTTTCAGAGGACTGTTCCGGTGGAAGGGAAGACTCCGCCTCCAGAACAGCCCACAACTCTGCCTGCGTCGCAAGATTCTGAGCCGAGAAGGGCAATGGATTCAACCTCGCAGGTCACAGAGGATATCGATGTGGCTCCAAAGACCGACCCCGAGGTCGGGAATGAAAGAAAGGAGAAGAAAAAGGGAAAGGAAGGAAAAATGAAGAGAAGGAAAAGAAAAAATAATGGTGGAAGAGAAGGGTACAAGAGGTACGTGTGGAAAGTGTTGAAACAAGTGCATCCGGAGATGGGAATATCGGGGAAAGCCATGTTGATTCTCAACAATTTGATGAACGATATGTTTGAAAGACTAGCTCAAGAAGCAACTCAACTCTCCAAATATACAGTTGGAATTTGGGAATATTGGTGGGTGATAGGTGGAATGACGCTGTCATCAAGAGAAATACAGGGGGCGGTGAGGTTAGTGTTGCCTGGAGAGCTTGGGAAGCACGCCATCGCTGAGGGAACTAAAGCTGTCTCCAATTATGTATCTTATGATCATAGGAGACCCAAATTACCATAA

Protein sequence

MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQRTVPVEGKTPPPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEVGNERKEKKKGKEGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQLSKYTVGIWEYWWVIGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYDHRRPKLP

Homology

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BLAST of ClCG01G013960 vs. NCBI nr
Match: XP_038894659.1 (LOW QUALITY PROTEIN: histone H2B-like [Benincasa hispida])

HSP 1 Score: 299.7 bits (766), Expect = 2.3e-77
Identity = 169/245 (68.98%), Postives = 194/245 (79.18%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQRTV 60
           MPPRRSRR+VGSVVRTTTR+VEETVQVAV+EKESQDLTQEP+T  +T  G GG++F+RT+
Sbjct: 1   MPPRRSRRVVGSVVRTTTRMVEETVQVAVLEKESQDLTQEPET-TQTAEGRGGDVFRRTI 60

Query: 61  PVEGKTPPPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEVGNERK----EKKK 120
           PVE K PP EQP T P S+D + R+  DSTSQ+TED    P+ +PEV N +K    +KK 
Sbjct: 61  PVEEKAPPREQPKTFPVSEDFDTRKPTDSTSQLTEDTAATPEVEPEVRNGKKGRKRKKKM 120

Query: 121 GKEGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEA 180
            KEGK +R+     GGREGYKRYV+KVLKQVHPE+GISGKAM+ILNN MNDMF+RLA EA
Sbjct: 121 EKEGKRRRKSSGGGGGREGYKRYVFKVLKQVHPEIGISGKAMVILNNFMNDMFQRLADEA 180

Query: 181 TQLSKYTVGIWEYWWVIGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYDHR 240
           T+LSKYT          GGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVS YVSY H 
Sbjct: 181 TKLSKYT----------GGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSAYVSYVHT 234

Query: 241 RPKLP 242
           +  LP
Sbjct: 241 KTXLP 234

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BLAST of ClCG01G013960 vs. NCBI nr
Match: XP_008462313.1 (PREDICTED: histone H2B type 1-A-like [Cucumis melo])

HSP 1 Score: 294.7 bits (753), Expect = 7.4e-76
Identity = 179/249 (71.89%), Postives = 201/249 (80.72%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQRTV 60
           MPPRRSRR+VGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDT AET  G GGEMF+R V
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDT-AETADG-GGEMFRRPV 60

Query: 61  PVEG-KTP-PPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEV------GNERK 120
           PVE  K+P PPEQP T P S++ E RRA DSTSQ+TED  V P+ +PEV      G  +K
Sbjct: 61  PVEEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPEVQKGKKGGRRKK 120

Query: 121 EKKKGKEGKMKRRKRKNN--GGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMFE 180
           +K+K +E K  +R+ KN+   GREGYKRYV+KVLKQVHPE+GISG+AMLILNN MNDMF+
Sbjct: 121 KKEKKREIKEGKRRSKNSSGSGREGYKRYVFKVLKQVHPEIGISGQAMLILNNFMNDMFQ 180

Query: 181 RLAQEATQLSKYTVGIWEYWWVIGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNY 240
           RLA+EAT+LSKYT          GGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNY
Sbjct: 181 RLAEEATKLSKYT----------GGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNY 237

[Close]

BLAST of ClCG01G013960 vs. NCBI nr
Match: XP_031736247.1 (histone H2B [Cucumis sativus] >KGN64870.1 hypothetical protein Csa_022747 [Cucumis sativus])

HSP 1 Score: 293.5 bits (750), Expect = 1.7e-75
Identity = 177/253 (69.96%), Postives = 199/253 (78.66%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQRTV 60
           MPPRRSRR+VGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD  AET  G GGEMF+RTV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD-MAETPDG-GGEMFRRTV 60

Query: 61  PVEGKTPPPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEV-----GNERKEKK 120
           PVE     P+QP + P S+D E RRA DSTSQ+TED  V P+ +P++     G  R++KK
Sbjct: 61  PVEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKK 120

Query: 121 KG-----KEGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMFE 180
           K      KEGK + +K    GGREGYKRYV+KVLKQVHPE+GISG+AMLILNN MNDMF+
Sbjct: 121 KEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQ 180

Query: 181 RLAQEATQLSKYTVGIWEYWWVIGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNY 240
           RLA+EAT+LSKYT          GGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNY
Sbjct: 181 RLAEEATKLSKYT----------GGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNY 240

Query: 241 VSYDHR--RPKLP 242
           VSY +R  + KLP
Sbjct: 241 VSYGNRATKSKLP 241

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BLAST of ClCG01G013960 vs. NCBI nr
Match: KAA0052101.1 (histone H2B type 1-A-like [Cucumis melo var. makuwa])

HSP 1 Score: 267.7 bits (683), Expect = 9.7e-68
Identity = 163/241 (67.63%), Postives = 178/241 (73.86%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQRTV 60
           MPPRRSRR+VGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDT AET  G GGEMF+R V
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDT-AETADG-GGEMFRRPV 60

Query: 61  PVEG-KTP-PPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEVGNERKEKKKGK 120
           PVE  K+P PPEQP T P S++ E RRA DSTSQ+TED  V P+ +PE            
Sbjct: 61  PVEEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPE------------ 120

Query: 121 EGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQ 180
                              RYV+KVLKQVHPE+GISG+AMLILNN MNDMF+RLA+EAT+
Sbjct: 121 -------------------RYVFKVLKQVHPEIGISGQAMLILNNFMNDMFQRLAEEATK 180

Query: 181 LSKYTVGIWEYWWVIGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYDHRRP 240
           LSKYT          GGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSY +R  
Sbjct: 181 LSKYT----------GGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRTT 198

[Close]

BLAST of ClCG01G013960 vs. NCBI nr
Match: XP_022937552.1 (histone H2B.6-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 263.1 bits (671), Expect = 2.4e-66
Identity = 160/239 (66.95%), Postives = 185/239 (77.41%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQRTV 60
           MPPRRSRRIVGSVVRTTT+VVEETV VAVVE ESQD+TQEP T AET GGDG  +F+RT+
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPAT-AET-GGDG--VFRRTI 60

Query: 61  PVEGKTPPPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEVGNERKEKKKGKEG 120
           PV       E P T P   D +  R +DSTS+VTED DV  K + +  +  +E +K  E 
Sbjct: 61  PV-------EDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGVRESRKKNEK 120

Query: 121 KMKR--RKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQ 180
           K +R  +KR++ GGREGYKRYV+KVLKQVHPE+GISG+AM+ILNNLMNDMFERLA+EAT+
Sbjct: 121 KKEREVKKRRSGGGREGYKRYVFKVLKQVHPEVGISGQAMVILNNLMNDMFERLAEEATK 180

Query: 181 LSKYTVGIWEYWWVIGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYDHRR 238
           LSKYT          GG TLSSREIQGAV+LV PGELGKHA+AEGTKAVS YVSYDHRR
Sbjct: 181 LSKYT----------GGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRR 218

[Close]

BLAST of ClCG01G013960 vs. ExPASy Swiss-Prot
Match: Q9SGE3 (Histone H2B.2 OS=Arabidopsis thaliana OX=3702 GN=At1g08170 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.0e-28
Identity = 99/266 (37.22%), Postives = 140/266 (52.63%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVE-------------KESQDLT--------- 60
           M PR+ + +    V    +VVEET++V V E             +E+QDLT         
Sbjct: 1   MAPRKPKVV---SVTKKKKVVEETIKVTVTEEGDPCVITETANDQETQDLTFSIPVGENV 60

Query: 61  -------QEPDTAAETGGGDGGEMFQRTVPVEGKTPPPEQPTTLPASQDSEPRRAMDSTS 120
                  + PD   E     G  +    +PV+ +     QP   P     EP      T 
Sbjct: 61  TTVEIPVEVPD---ERSLPVGENVTTVKIPVDDRDESSPQPPETPVEVRDEPSPQPPETP 120

Query: 121 QVTEDIDVAPKTDPEVGNERKEKKKGKEGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEM 180
                   A K++  +    K +KK +  K K++K++++   + Y+RYV+KV+KQVHP++
Sbjct: 121 --------ASKSEGTLKKTDKVEKKQENKKKKKKKKRDDLAGDEYRRYVYKVMKQVHPDL 180

Query: 181 GISGKAMLILNNLMNDMFERLAQEATQLSKYTVGIWEYWWVIGGMTLSSREIQGAVRLVL 238
           GI+ KAM ++N  M DMFER+AQEA +LS YT             TLSSREI+ AVRLVL
Sbjct: 181 GITSKAMTVVNMFMGDMFERIAQEAARLSDYT----------KRRTLSSREIEAAVRLVL 240

[Close]

BLAST of ClCG01G013960 vs. ExPASy Swiss-Prot
Match: Q9LFF6 (Histone H2B.8 OS=Arabidopsis thaliana OX=3702 GN=At3g53650 PE=1 SV=3)

HSP 1 Score: 119.0 bits (297), Expect = 7.3e-26
Identity = 65/122 (53.28%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 111 RKEKKKGKEGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMFE 170
           + EKK  KEG  +++K+K+    E YK Y++KVLKQVHP++GISGKAM I+N+ +ND+FE
Sbjct: 26  KAEKKITKEGGSEKKKKKSKKNIETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFE 85

Query: 171 RLAQEATQLSKYTVGIWEYWWVIGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNY 230
           +LAQE+++L++Y              T++SREIQ AVRLVLPGEL KHA++EGTKAV+ +
Sbjct: 86  KLAQESSRLARYN----------KKPTITSREIQTAVRLVLPGELSKHAVSEGTKAVTKF 137

Query: 231 VS 233
            S
Sbjct: 146 TS 137

[Close]

BLAST of ClCG01G013960 vs. ExPASy Swiss-Prot
Match: Q9LZ45 (Histone H2B.9 OS=Arabidopsis thaliana OX=3702 GN=At5g02570 PE=1 SV=3)

HSP 1 Score: 115.5 bits (288), Expect = 8.1e-25
Identity = 67/141 (47.52%), Postives = 96/141 (68.09%), Query Frame = 0


Query: 99  VAPKTD-------PEVGNERKEKKKGKEGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEM 158
           +APK +       P    E+K  K+G   ++ ++K+K     E YK Y++KVLKQVHP++
Sbjct: 1   MAPKAEKKPAEKAPAPKAEKKIAKEGGTSEIVKKKKKTKKSTETYKIYIFKVLKQVHPDI 60

Query: 159 GISGKAMLILNNLMNDMFERLAQEATQLSKYTVGIWEYWWVIGGMTLSSREIQGAVRLVL 218
           GISGKAM I+N+ +ND+FE+LAQE+++L++Y              T++SREIQ AVRLVL
Sbjct: 61  GISGKAMGIMNSFINDIFEKLAQESSRLARYN----------KKPTITSREIQTAVRLVL 120

Query: 219 PGELGKHAIAEGTKAVSNYVS 233
           PGEL KHA++EGTKAV+ + S
Sbjct: 121 PGELAKHAVSEGTKAVTKFTS 131

[Close]

BLAST of ClCG01G013960 vs. ExPASy Swiss-Prot
Match: Q1SU99 (Probable histone H2B.3 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-24
Identity = 63/128 (49.22%), Postives = 89/128 (69.53%), Query Frame = 0


Query: 105 PEVGNERKEKKKGKEGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNL 164
           P     + EKK  KEG   ++K++     E YK Y++KVLKQVHP++G+S KAM I+N+ 
Sbjct: 20  PAEKKPKAEKKISKEGSSDKKKKRTKKSVETYKIYIFKVLKQVHPDIGVSSKAMGIMNSF 79

Query: 165 MNDMFERLAQEATQLSKYTVGIWEYWWVIGGMTLSSREIQGAVRLVLPGELGKHAIAEGT 224
           +ND+FE+LAQE+++L++Y              T++SREIQ AVRLVLPGEL KHA++EGT
Sbjct: 80  INDIFEKLAQESSRLARYN----------KKPTITSREIQTAVRLVLPGELAKHAVSEGT 137

Query: 225 KAVSNYVS 233
           KAV+ + S
Sbjct: 140 KAVTKFTS 137

[Close]

BLAST of ClCG01G013960 vs. ExPASy Swiss-Prot
Match: Q9ZUS0 (Histone H2B.4 OS=Arabidopsis thaliana OX=3702 GN=At2g37470 PE=1 SV=3)

HSP 1 Score: 114.0 bits (284), Expect = 2.4e-24
Identity = 64/123 (52.03%), Postives = 91/123 (73.98%), Query Frame = 0


Query: 111 RKEKKKGKE-GKMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMF 170
           + EKK  K+ G  +++K+K+    E YK Y++KVLKQVHP++GISGKAM I+N+ +ND+F
Sbjct: 26  KAEKKISKDAGGSEKKKKKSKKSVETYKIYIFKVLKQVHPDVGISGKAMGIMNSFINDIF 85

Query: 171 ERLAQEATQLSKYTVGIWEYWWVIGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSN 230
           E+LAQE+++L++Y              T++SREIQ AVRLVLPGEL KHA++EGTKAV+ 
Sbjct: 86  EKLAQESSKLARYN----------KKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 138

Query: 231 YVS 233
           + S
Sbjct: 146 FTS 138

[Close]

BLAST of ClCG01G013960 vs. ExPASy TrEMBL
Match: A0A1S3CH74 (histone H2B type 1-A-like OS=Cucumis melo OX=3656 GN=LOC103500693 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 3.6e-76
Identity = 179/249 (71.89%), Postives = 201/249 (80.72%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQRTV 60
           MPPRRSRR+VGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDT AET  G GGEMF+R V
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDT-AETADG-GGEMFRRPV 60

Query: 61  PVEG-KTP-PPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEV------GNERK 120
           PVE  K+P PPEQP T P S++ E RRA DSTSQ+TED  V P+ +PEV      G  +K
Sbjct: 61  PVEEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPEVQKGKKGGRRKK 120

Query: 121 EKKKGKEGKMKRRKRKNN--GGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMFE 180
           +K+K +E K  +R+ KN+   GREGYKRYV+KVLKQVHPE+GISG+AMLILNN MNDMF+
Sbjct: 121 KKEKKREIKEGKRRSKNSSGSGREGYKRYVFKVLKQVHPEIGISGQAMLILNNFMNDMFQ 180

Query: 181 RLAQEATQLSKYTVGIWEYWWVIGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNY 240
           RLA+EAT+LSKYT          GGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNY
Sbjct: 181 RLAEEATKLSKYT----------GGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNY 237

[Close]

BLAST of ClCG01G013960 vs. ExPASy TrEMBL
Match: A0A0A0LSH9 (Histone domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G136770 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 8.0e-76
Identity = 177/253 (69.96%), Postives = 199/253 (78.66%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQRTV 60
           MPPRRSRR+VGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD  AET  G GGEMF+RTV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD-MAETPDG-GGEMFRRTV 60

Query: 61  PVEGKTPPPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEV-----GNERKEKK 120
           PVE     P+QP + P S+D E RRA DSTSQ+TED  V P+ +P++     G  R++KK
Sbjct: 61  PVEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKK 120

Query: 121 KG-----KEGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMFE 180
           K      KEGK + +K    GGREGYKRYV+KVLKQVHPE+GISG+AMLILNN MNDMF+
Sbjct: 121 KEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQ 180

Query: 181 RLAQEATQLSKYTVGIWEYWWVIGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNY 240
           RLA+EAT+LSKYT          GGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNY
Sbjct: 181 RLAEEATKLSKYT----------GGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNY 240

Query: 241 VSYDHR--RPKLP 242
           VSY +R  + KLP
Sbjct: 241 VSYGNRATKSKLP 241

[Close]

BLAST of ClCG01G013960 vs. ExPASy TrEMBL
Match: A0A5A7UF12 (Histone H2B type 1-A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00860 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.7e-68
Identity = 163/241 (67.63%), Postives = 178/241 (73.86%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQRTV 60
           MPPRRSRR+VGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDT AET  G GGEMF+R V
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDT-AETADG-GGEMFRRPV 60

Query: 61  PVEG-KTP-PPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEVGNERKEKKKGK 120
           PVE  K+P PPEQP T P S++ E RRA DSTSQ+TED  V P+ +PE            
Sbjct: 61  PVEEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPE------------ 120

Query: 121 EGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQ 180
                              RYV+KVLKQVHPE+GISG+AMLILNN MNDMF+RLA+EAT+
Sbjct: 121 -------------------RYVFKVLKQVHPEIGISGQAMLILNNFMNDMFQRLAEEATK 180

Query: 181 LSKYTVGIWEYWWVIGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYDHRRP 240
           LSKYT          GGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSY +R  
Sbjct: 181 LSKYT----------GGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRTT 198

[Close]

BLAST of ClCG01G013960 vs. ExPASy TrEMBL
Match: A0A6J1FBI7 (histone H2B.6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443927 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 1.2e-66
Identity = 160/239 (66.95%), Postives = 185/239 (77.41%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQRTV 60
           MPPRRSRRIVGSVVRTTT+VVEETV VAVVE ESQD+TQEP T AET GGDG  +F+RT+
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPAT-AET-GGDG--VFRRTI 60

Query: 61  PVEGKTPPPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEVGNERKEKKKGKEG 120
           PV       E P T P   D +  R +DSTS+VTED DV  K + +  +  +E +K  E 
Sbjct: 61  PV-------EDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGVRESRKKNEK 120

Query: 121 KMKR--RKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQ 180
           K +R  +KR++ GGREGYKRYV+KVLKQVHPE+GISG+AM+ILNNLMNDMFERLA+EAT+
Sbjct: 121 KKEREVKKRRSGGGREGYKRYVFKVLKQVHPEVGISGQAMVILNNLMNDMFERLAEEATK 180

Query: 181 LSKYTVGIWEYWWVIGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYDHRR 238
           LSKYT          GG TLSSREIQGAV+LV PGELGKHA+AEGTKAVS YVSYDHRR
Sbjct: 181 LSKYT----------GGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRR 218

[Close]

BLAST of ClCG01G013960 vs. ExPASy TrEMBL
Match: A0A5D3BHX3 (Histone H2B type 1-A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold565G00310 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 6.4e-65
Identity = 159/241 (65.98%), Postives = 173/241 (71.78%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQRTV 60
           MPPRRSRR+VGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDT AET  G GGEMF+R V
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDT-AETADG-GGEMFRRPV 60

Query: 61  PVEG-KTP-PPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEVGNERKEKKKGK 120
           PVE  K+P PPEQP T P S++ E RRA DSTSQ+TED  V P+ +PE            
Sbjct: 61  PVEEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPE------------ 120

Query: 121 EGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQ 180
                                   VLKQVHPE+GISG+AMLILNN MNDMF+RLA+EAT+
Sbjct: 121 ------------------------VLKQVHPEIGISGQAMLILNNFMNDMFQRLAEEATK 180

Query: 181 LSKYTVGIWEYWWVIGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYDHRRP 240
           LSKYT          GGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSY +R  
Sbjct: 181 LSKYT----------GGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRTT 193

[Close]

BLAST of ClCG01G013960 vs. TAIR 10
Match: AT1G08170.1 (Histone superfamily protein )

HSP 1 Score: 125.9 bits (315), Expect = 4.3e-29
Identity = 99/266 (37.22%), Postives = 140/266 (52.63%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVE-------------KESQDLT--------- 60
           M PR+ + +    V    +VVEET++V V E             +E+QDLT         
Sbjct: 1   MAPRKPKVV---SVTKKKKVVEETIKVTVTEEGDPCVITETANDQETQDLTFSIPVGENV 60

Query: 61  -------QEPDTAAETGGGDGGEMFQRTVPVEGKTPPPEQPTTLPASQDSEPRRAMDSTS 120
                  + PD   E     G  +    +PV+ +     QP   P     EP      T 
Sbjct: 61  TTVEIPVEVPD---ERSLPVGENVTTVKIPVDDRDESSPQPPETPVEVRDEPSPQPPETP 120

Query: 121 QVTEDIDVAPKTDPEVGNERKEKKKGKEGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEM 180
                   A K++  +    K +KK +  K K++K++++   + Y+RYV+KV+KQVHP++
Sbjct: 121 --------ASKSEGTLKKTDKVEKKQENKKKKKKKKRDDLAGDEYRRYVYKVMKQVHPDL 180

Query: 181 GISGKAMLILNNLMNDMFERLAQEATQLSKYTVGIWEYWWVIGGMTLSSREIQGAVRLVL 238
           GI+ KAM ++N  M DMFER+AQEA +LS YT             TLSSREI+ AVRLVL
Sbjct: 181 GITSKAMTVVNMFMGDMFERIAQEAARLSDYT----------KRRTLSSREIEAAVRLVL 240

[Close]

BLAST of ClCG01G013960 vs. TAIR 10
Match: AT3G53650.1 (Histone superfamily protein )

HSP 1 Score: 119.0 bits (297), Expect = 5.2e-27
Identity = 65/122 (53.28%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 111 RKEKKKGKEGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMFE 170
           + EKK  KEG  +++K+K+    E YK Y++KVLKQVHP++GISGKAM I+N+ +ND+FE
Sbjct: 26  KAEKKITKEGGSEKKKKKSKKNIETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFE 85

Query: 171 RLAQEATQLSKYTVGIWEYWWVIGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNY 230
           +LAQE+++L++Y              T++SREIQ AVRLVLPGEL KHA++EGTKAV+ +
Sbjct: 86  KLAQESSRLARYN----------KKPTITSREIQTAVRLVLPGELSKHAVSEGTKAVTKF 137

Query: 231 VS 233
            S
Sbjct: 146 TS 137

[Close]

BLAST of ClCG01G013960 vs. TAIR 10
Match: AT5G02570.1 (Histone superfamily protein )

HSP 1 Score: 115.5 bits (288), Expect = 5.8e-26
Identity = 67/141 (47.52%), Postives = 96/141 (68.09%), Query Frame = 0


Query: 99  VAPKTD-------PEVGNERKEKKKGKEGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEM 158
           +APK +       P    E+K  K+G   ++ ++K+K     E YK Y++KVLKQVHP++
Sbjct: 1   MAPKAEKKPAEKAPAPKAEKKIAKEGGTSEIVKKKKKTKKSTETYKIYIFKVLKQVHPDI 60

Query: 159 GISGKAMLILNNLMNDMFERLAQEATQLSKYTVGIWEYWWVIGGMTLSSREIQGAVRLVL 218
           GISGKAM I+N+ +ND+FE+LAQE+++L++Y              T++SREIQ AVRLVL
Sbjct: 61  GISGKAMGIMNSFINDIFEKLAQESSRLARYN----------KKPTITSREIQTAVRLVL 120

Query: 219 PGELGKHAIAEGTKAVSNYVS 233
           PGEL KHA++EGTKAV+ + S
Sbjct: 121 PGELAKHAVSEGTKAVTKFTS 131

[Close]

BLAST of ClCG01G013960 vs. TAIR 10
Match: AT2G37470.1 (Histone superfamily protein )

HSP 1 Score: 114.0 bits (284), Expect = 1.7e-25
Identity = 64/123 (52.03%), Postives = 91/123 (73.98%), Query Frame = 0


Query: 111 RKEKKKGKE-GKMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMF 170
           + EKK  K+ G  +++K+K+    E YK Y++KVLKQVHP++GISGKAM I+N+ +ND+F
Sbjct: 26  KAEKKISKDAGGSEKKKKKSKKSVETYKIYIFKVLKQVHPDVGISGKAMGIMNSFINDIF 85

Query: 171 ERLAQEATQLSKYTVGIWEYWWVIGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSN 230
           E+LAQE+++L++Y              T++SREIQ AVRLVLPGEL KHA++EGTKAV+ 
Sbjct: 86  EKLAQESSKLARYN----------KKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 138

Query: 231 YVS 233
           + S
Sbjct: 146 FTS 138

[Close]

BLAST of ClCG01G013960 vs. TAIR 10
Match: AT3G09480.1 (Histone superfamily protein )

HSP 1 Score: 109.8 bits (273), Expect = 3.2e-24
Identity = 67/136 (49.26%), Postives = 92/136 (67.65%), Query Frame = 0


Query: 99  VAPKTD--PEVGNERKEKKKGKEGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGK 158
           +APK +  P     + +KK  KEG    RK+K     E YK Y++KVLKQVHP++GISGK
Sbjct: 1   MAPKAEKKPSEKAPKADKKITKEGG-SERKKKTKKSTETYKIYLFKVLKQVHPDIGISGK 60

Query: 159 AMLILNNLMNDMFERLAQEATQLSKYTVGIWEYWWVIGGMTLSSREIQGAVRLVLPGELG 218
           AM I+N+ +ND FE++A E+++L++Y              T++SREIQ AVRLVLPGEL 
Sbjct: 61  AMGIMNSFINDTFEKIALESSRLARYN----------KKPTITSREIQTAVRLVLPGELA 120

Query: 219 KHAIAEGTKAVSNYVS 233
           KHA++EGTKAV+ + S
Sbjct: 121 KHAVSEGTKAVTKFTS 125

The following BLAST results are available for this feature:

BLAST of ClCG01G013960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894659.1	2.3e-77	68.98	LOW QUALITY PROTEIN: histone H2B-like [Benincasa hispida]	[more]
XP_008462313.1	7.4e-76	71.89	PREDICTED: histone H2B type 1-A-like [Cucumis melo]	[more]
XP_031736247.1	1.7e-75	69.96	histone H2B [Cucumis sativus] >KGN64870.1 hypothetical protein Csa_022747 [Cucum...	[more]
KAA0052101.1	9.7e-68	67.63	histone H2B type 1-A-like [Cucumis melo var. makuwa]	[more]
XP_022937552.1	2.4e-66	66.95	histone H2B.6-like isoform X1 [Cucurbita moschata]	[more]

BLAST of ClCG01G013960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SGE3	6.0e-28	37.22	Histone H2B.2 OS=Arabidopsis thaliana OX=3702 GN=At1g08170 PE=2 SV=1	[more]
Q9LFF6	7.3e-26	53.28	Histone H2B.8 OS=Arabidopsis thaliana OX=3702 GN=At3g53650 PE=1 SV=3	[more]
Q9LZ45	8.1e-25	47.52	Histone H2B.9 OS=Arabidopsis thaliana OX=3702 GN=At5g02570 PE=1 SV=3	[more]
Q1SU99	1.1e-24	49.22	Probable histone H2B.3 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
Q9ZUS0	2.4e-24	52.03	Histone H2B.4 OS=Arabidopsis thaliana OX=3702 GN=At2g37470 PE=1 SV=3	[more]

BLAST of ClCG01G013960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CH74	3.6e-76	71.89	histone H2B type 1-A-like OS=Cucumis melo OX=3656 GN=LOC103500693 PE=3 SV=1	[more]
A0A0A0LSH9	8.0e-76	69.96	Histone domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G136770 PE=...	[more]
A0A5A7UF12	4.7e-68	67.63	Histone H2B type 1-A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A6J1FBI7	1.2e-66	66.95	histone H2B.6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443927 PE=3...	[more]
A0A5D3BHX3	6.4e-65	65.98	Histone H2B type 1-A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of ClCG01G013960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08170.1	4.3e-29	37.22	Histone superfamily protein	[more]
AT3G53650.1	5.2e-27	53.28	Histone superfamily protein	[more]
AT5G02570.1	5.8e-26	47.52	Histone superfamily protein	[more]
AT2G37470.1	1.7e-25	52.03	Histone superfamily protein	[more]
AT3G09480.1	3.2e-24	49.26	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 155..175 score: 54.65 coord: 136..154 score: 68.17
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 123..232 e-value: 2.8E-40 score: 149.8
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 1..234
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 105..182 e-value: 9.0E-14 score: 52.0
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 96..233 e-value: 1.4E-43 score: 149.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 109..232
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..97
None	No IPR available	PANTHER	PTHR23428:SF238	HISTONE H2B.2	coord: 1..234

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G013960.2	ClCG01G013960.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity