ClCG01G012635 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G012635
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Chromo domain-containing protein
Location	CG_Chr01: 25047680 .. 25048277 (+)
RNA-Seq Expression	ClCG01G012635
Synteny	ClCG01G012635

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCATGACAACCAAATATGACAAGATAATTGCCACCATTGTGGCCCATATAAGGGTAAGCAGTAAAGGTGTCCCAAGTCATTTTGAATATCTCGTAAAGTGGCAAGGACTCCCGGAGTCAGAAGCAAGCTGGGAAAAGGACACCTATGGCAATTCCCTGACAAGATCTCGAAATATTGGCAGGGGCCCCGCGACGAGGGCGTCGCTAGTATCAGTGGGGGAGGGTGTCACAAAAAAAAATTGACCCACAAATTTCGTGACACTAATGTGTCTATCCCCTTAGGATGTCCAAGCAGGGATAGGGAAAATGCTAGTCGCAGCCAACAAGAAGACCTATGCATCTGCCGCACCCCACCGGCACGCATAGCCTAGAACGTCCAATAAAGAGCTGCGCGCATAAGGGAGGACGAGTGGAGAAGGATGCGTCAACCCTAGTCAATCGCACACTAGACGCATCGCTAGGCAACGCCGCGTCCCACGCATCGCTGAGCAAGGCTGCGTTCGACGCATTGCTGAGCAAGGCTGCGTCCGACGAATCACTAGACAAGGTTGCGTCCGACGCATCGCTGAACGCACCGCAAGGCAAATGTCCGTGA

mRNA sequence

ATGGGCATGACAACCAAATATGACAAGATAATTGCCACCATTGTGGCCCATATAAGGGTAAGCAGTAAAGGTGTCCCAAGTCATTTTGAATATCTCGTAAAGTGGCAAGGACTCCCGGAGTCAGAAGCAAGCTGGGAAAAGGACACCTATGGCAATTCCCTGACAAGATCTCGAAATATTGGCAGGGGCCCCGCGACGAGGGCGTCGCTAGTATCATCGCAGCCAACAAGAAGACCTATGCATCTGCCGCACCCCACCGGCACGCATAGCCTAGAACGTCCAATAAAGAGCTGCGCGCATAAGGGAGGACGAGTGGAGAAGGATGCGTCAACCCTAGTCAATCGCACACTAGACGCATCGCTAGGCAACGCCGCGTCCCACGCATCGCTGAGCAAGGCTGCGTTCGACGCATTGCTGAGCAAGGCTGCGTCCGACGAATCACTAGACAAGGTTGCGTCCGACGCATCGCTGAACGCACCGCAAGGCAAATGTCCGTGA

Coding sequence (CDS)

ATGGGCATGACAACCAAATATGACAAGATAATTGCCACCATTGTGGCCCATATAAGGGTAAGCAGTAAAGGTGTCCCAAGTCATTTTGAATATCTCGTAAAGTGGCAAGGACTCCCGGAGTCAGAAGCAAGCTGGGAAAAGGACACCTATGGCAATTCCCTGACAAGATCTCGAAATATTGGCAGGGGCCCCGCGACGAGGGCGTCGCTAGTATCATCGCAGCCAACAAGAAGACCTATGCATCTGCCGCACCCCACCGGCACGCATAGCCTAGAACGTCCAATAAAGAGCTGCGCGCATAAGGGAGGACGAGTGGAGAAGGATGCGTCAACCCTAGTCAATCGCACACTAGACGCATCGCTAGGCAACGCCGCGTCCCACGCATCGCTGAGCAAGGCTGCGTTCGACGCATTGCTGAGCAAGGCTGCGTCCGACGAATCACTAGACAAGGTTGCGTCCGACGCATCGCTGAACGCACCGCAAGGCAAATGTCCGTGA

Protein sequence

MGMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKDTYGNSLTRSRNIGRGPATRASLVSSQPTRRPMHLPHPTGTHSLERPIKSCAHKGGRVEKDASTLVNRTLDASLGNAASHASLSKAAFDALLSKAASDESLDKVASDASLNAPQGKCP

Homology

[Close]

BLAST of ClCG01G012635 vs. NCBI nr
Match: KAA0025963.1 (uncharacterized protein E6C27_scaffold34G002780 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-06
Identity = 26/47 (55.32%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 2   GMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKD 49
           G+ TK+D+ I  I+A  ++  +GVPSH EYL+ W+GLPESEASWE++
Sbjct: 274 GVVTKFDRKIKEILAERKIRRRGVPSHSEYLILWEGLPESEASWERE 320

[Close]

BLAST of ClCG01G012635 vs. NCBI nr
Match: GEV01859.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-06
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 3   MTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKDTYGNSL-TRSRNIG 62
           + T YD+ +  I++   +  +GVPS+ EYL+KW+ LP+SEASWE  TY  SL TRSR+I 
Sbjct: 869 VVTSYDRKVEEILSDRTIRRRGVPSYKEYLIKWRDLPDSEASWEAKTYCGSLRTRSRDIT 928

[Close]

BLAST of ClCG01G012635 vs. NCBI nr
Match: KAA0033203.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-06
Identity = 26/47 (55.32%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 2   GMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKD 49
           G+ T++D+ I  I+A  ++  +GVPSH EYL+ W+GLPESEASWE+D
Sbjct: 855 GVITEFDRKIKEILAERKIRRRGVPSHSEYLILWEGLPESEASWERD 901

[Close]

BLAST of ClCG01G012635 vs. NCBI nr
Match: GEX59468.1 (chromo domain-like [Tanacetum cinerariifolium])

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-06
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 3   MTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKDTYGNSL-TRSRNIG 62
           + T YD+ +  I ++  +  +GVPS+ EYL+KW+ LP+SEASWE  TY  SL TRSR+I 
Sbjct: 69  VVTSYDREVEEISSNHTIRRRGVPSYKEYLIKWRDLPDSEASWEAKTYCGSLRTRSRDIT 128

[Close]

BLAST of ClCG01G012635 vs. NCBI nr
Match: KAA0042139.1 (uncharacterized protein E6C27_scaffold67G006280 [Cucumis melo var. makuwa] >TYK18078.1 uncharacterized protein E5676_scaffold306G004140 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 3.3e-06
Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 2   GMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKD 49
           G+ T++D+ I  I+A  ++  +GVPSH EYL+ W+GLPESEASWE++
Sbjct: 400 GVVTEFDRKIKEILAERKIRRRGVPSHSEYLILWEGLPESEASWERE 446

[Close]

BLAST of ClCG01G012635 vs. ExPASy TrEMBL
Match: A0A5A7SMQ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002780 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.4e-07
Identity = 26/47 (55.32%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 2   GMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKD 49
           G+ TK+D+ I  I+A  ++  +GVPSH EYL+ W+GLPESEASWE++
Sbjct: 274 GVVTKFDRKIKEILAERKIRRRGVPSHSEYLILWEGLPESEASWERE 320

[Close]

BLAST of ClCG01G012635 vs. ExPASy TrEMBL
Match: A0A5A7SS05 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1276G00540 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.1e-07
Identity = 26/47 (55.32%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 2   GMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKD 49
           G+ T++D+ I  I+A  ++  +GVPSH EYL+ W+GLPESEASWE+D
Sbjct: 855 GVITEFDRKIKEILAERKIRRRGVPSHSEYLILWEGLPESEASWERD 901

[Close]

BLAST of ClCG01G012635 vs. ExPASy TrEMBL
Match: A0A5D3D359 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G004140 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-06
Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 2   GMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKD 49
           G+ T++D+ I  I+A  ++  +GVPSH EYL+ W+GLPESEASWE++
Sbjct: 400 GVVTEFDRKIKEILAERKIRRRGVPSHSEYLILWEGLPESEASWERE 446

[Close]

BLAST of ClCG01G012635 vs. ExPASy TrEMBL
Match: A0A5D3BX70 (Chromo domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00030 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-06
Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 2   GMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKD 49
           G+ T++D+ I  I+A  ++  +GVPSH EYL+ W+GLPESEASWE++
Sbjct: 144 GVVTEFDRKIKEILAERKIRRRGVPSHSEYLILWEGLPESEASWERE 190

[Close]

BLAST of ClCG01G012635 vs. ExPASy TrEMBL
Match: A0A5D3BZR4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G00190 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.1e-06
Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 2   GMTTKYDKIIATIVAHIRVSSKGVPSHFEYLVKWQGLPESEASWEKD 49
           G+ T++D+ I  I+A  ++  +GVPSH EYL+ W+GLPESEASWE++
Sbjct: 476 GVITEFDRKIKEILAERKIRRRGVPSHSEYLILWEGLPESEASWERE 522

The following BLAST results are available for this feature:

BLAST of ClCG01G012635 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025963.1	1.1e-06	55.32	uncharacterized protein E6C27_scaffold34G002780 [Cucumis melo var. makuwa]	[more]
GEV01859.1	1.5e-06	50.82	hypothetical protein [Tanacetum cinerariifolium]	[more]
KAA0033203.1	1.5e-06	55.32	polyprotein [Cucumis melo var. makuwa]	[more]
GEX59468.1	1.9e-06	50.82	chromo domain-like [Tanacetum cinerariifolium]	[more]
KAA0042139.1	3.3e-06	53.19	uncharacterized protein E6C27_scaffold67G006280 [Cucumis melo var. makuwa] >TYK1...	[more]

BLAST of ClCG01G012635 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG01G012635 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMQ4	5.4e-07	55.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SS05	7.1e-07	55.32	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1276G00540 P...	[more]
A0A5D3D359	1.6e-06	53.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BX70	1.6e-06	53.19	Chromo domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5D3BZR4	2.1e-06	53.19	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14...	[more]

BLAST of ClCG01G012635 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.40		coord: 5..54 e-value: 2.2E-7 score: 32.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..76
IPR023780	Chromo domain	PFAM	PF00385	Chromo	coord: 11..47 e-value: 5.1E-8 score: 32.7
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 5..49 score: 10.095901
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 10..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G012635.1	ClCG01G012635.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity