ClCG01G012040 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G012040
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Transposase
Location	CG_Chr01: 21687561 .. 21688216 (-)
RNA-Seq Expression	ClCG01G012040
Synteny	ClCG01G012040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGACTTGTTAAATGATGTTTCCAATAGGTTAGACAGGTATGGATAGACAGTGAACCTCACAAACTTCACACCTTCTTCCAGGTTTAAAAGGGTAATCTAGGAGGTGGTGTGACAATGGAAGTCCTCCAGAACCTTTGTTAGAAGAGGCCATTTGCATGAAACTCAACAAAATGATATTTTCATGTGAGAAGAAGTGTGCCAAGAGATTGAATGACTAAACTGCAAATGACTATTGGAAGAGGAGACCTTAATTTTTTGAACTACCATATTGGAAAAAATTGCATGTAAGACATTGTCTTGATGTCATGCATATTGAAAAGAATGTGTGCATAAATGTAATAGGAACATTGCTTAATATACCTGAAAAAAGTAAAGATGGGATCAATACTAGACTTGATCTAGTTGAAATGAACATTCGACCTGAACTAGCACCCGTGTCTAGTGGGAGTAGAATGTACATACCCGCAACATGTTATACGTTGTCAAGAAAAGAGAAGTATCATTTTTGCAAGACTTTGTGTAAAATAAAGGTTCCGGAACGGTATTCATTGGAGTTCTCCAGTAGCTTTACGATGTTTGCTTCGAGAATTAGAGTATATTGGATCAACAATCCAACTTTCTGTACTCGTTGAGGTGTTCGGGATTCAATGA

mRNA sequence

ATGGGCGACTTGTTAAATGATGTTTCCAATAGGTTAGACAGTCCTCCAGAACCTTTGTTAGAAGAGGCCATTTGCATGAAACTCAACAAAATGATATTTTCATGTGAGAAGAAACATTGTCTTGATGTCATGCATATTGAAAAGAATGTGTGCATAAATGTAATAGGAACATTGCTTAATATACCTGAAAAAAGTAAAGATGGGATCAATACTAGACTTGATCTAGTTGAAATGAACATTCGACCTGAACTAGCACCCGTGTCTAGTGGGAGTAGAATGTACATACCCGCAACATGTTATACGTTGTCAAGAAAAGAGAAGTTCCGGAACGGTATTCATTGGAGTTCTCCAGTAGCTTTACGATGTTTGCTTCGAGAATTAGAGTATATTGGATCAACAATCCAACTTTCTGTACTCGTTGAGGTGTTCGGGATTCAATGA

Coding sequence (CDS)

ATGGGCGACTTGTTAAATGATGTTTCCAATAGGTTAGACAGTCCTCCAGAACCTTTGTTAGAAGAGGCCATTTGCATGAAACTCAACAAAATGATATTTTCATGTGAGAAGAAACATTGTCTTGATGTCATGCATATTGAAAAGAATGTGTGCATAAATGTAATAGGAACATTGCTTAATATACCTGAAAAAAGTAAAGATGGGATCAATACTAGACTTGATCTAGTTGAAATGAACATTCGACCTGAACTAGCACCCGTGTCTAGTGGGAGTAGAATGTACATACCCGCAACATGTTATACGTTGTCAAGAAAAGAGAAGTTCCGGAACGGTATTCATTGGAGTTCTCCAGTAGCTTTACGATGTTTGCTTCGAGAATTAGAGTATATTGGATCAACAATCCAACTTTCTGTACTCGTTGAGGTGTTCGGGATTCAATGA

Protein sequence

MGDLLNDVSNRLDSPPEPLLEEAICMKLNKMIFSCEKKHCLDVMHIEKNVCINVIGTLLNIPEKSKDGINTRLDLVEMNIRPELAPVSSGSRMYIPATCYTLSRKEKFRNGIHWSSPVALRCLLRELEYIGSTIQLSVLVEVFGIQ

Homology

[Close]

BLAST of ClCG01G012040 vs. NCBI nr
Match: KAA0062841.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 8.3e-30
Identity = 72/127 (56.69%), Postives = 86/127 (67.72%), Query Frame = 0


Query: 14  SPPEPLLEEAICMKLNKMIFSCEKK-------------------------------HCLD 73
           +PP+PL  EAI  KL +MIFSC KK                               HCLD
Sbjct: 130 NPPQPLSGEAIYFKLKEMIFSCGKKCDKNNNEGGNDYWKRRSDFFELPYWKNLHVRHCLD 189

Query: 74  VMHIEKNVCINVIGTLLNIPEKSKDGINTRLDLVEMNIRPELAPVSSGSRMYIPATCYTL 110
           VMHIEKNVC+N++GTLLNIP KSKD +N+RLDLVEMNIRP+LAP+ +G+R YIPATCYTL
Sbjct: 190 VMHIEKNVCMNIVGTLLNIPGKSKDAMNSRLDLVEMNIRPKLAPMVTGNRTYIPATCYTL 249

[Close]

BLAST of ClCG01G012040 vs. NCBI nr
Match: TYK11977.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 1.4e-29
Identity = 72/127 (56.69%), Postives = 85/127 (66.93%), Query Frame = 0


Query: 14  SPPEPLLEEAICMKLNKMIFSCEKK-------------------------------HCLD 73
           +PP PL  EAI  KL +MIFSC KK                               HCLD
Sbjct: 46  NPPHPLSGEAIYFKLKEMIFSCGKKCGKNNNEGGNDYSKRRSNFFELPYWKNLHVRHCLD 105

Query: 74  VMHIEKNVCINVIGTLLNIPEKSKDGINTRLDLVEMNIRPELAPVSSGSRMYIPATCYTL 110
           VMHIEKNVC+N++GTLL+IP KSKDG+N+RLDLVEMNIRPELAP+ +G+R YIPA CYTL
Sbjct: 106 VMHIEKNVCMNIVGTLLDIPGKSKDGMNSRLDLVEMNIRPELAPMVTGNRTYIPAACYTL 165

[Close]

BLAST of ClCG01G012040 vs. NCBI nr
Match: KAA0038004.1 (transposase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 1.4e-29
Identity = 67/94 (71.28%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 14  SPPEPLLEEAICMKLNKMIFSCEKKHCLDVMHIEKNVCINVIGTLLNIPEKSKDGINTRL 73
           +PP PL  E I  +L    F C K+HCLDVMHIEKNV +N+IGTLL+IP KSKDG++ RL
Sbjct: 438 TPPLPLSGETIYNRLKDKTFPCSKRHCLDVMHIEKNVLMNIIGTLLDIPGKSKDGLSARL 497

Query: 74  DLVEMNIRPELAPVSSGSRMYIPATCYTLSRKEK 108
           DLVEMNIRPELAPVS GSR YIPA CYTLSR+EK
Sbjct: 498 DLVEMNIRPELAPVSDGSRTYIPAACYTLSREEK 531

[Close]

BLAST of ClCG01G012040 vs. NCBI nr
Match: KAA0051767.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 138.7 bits (348), Expect = 4.1e-29
Identity = 70/127 (55.12%), Postives = 86/127 (67.72%), Query Frame = 0


Query: 14  SPPEPLLEEAICMKLNKMIFSCEKK-------------------------------HCLD 73
           +PPEPL  EAI  KL +MIFS  KK                               HCLD
Sbjct: 116 NPPEPLSGEAIYFKLKEMIFSSGKKCGKNNNEGGNDYWKRRSEFFELPYWKNLHVRHCLD 175

Query: 74  VMHIEKNVCINVIGTLLNIPEKSKDGINTRLDLVEMNIRPELAPVSSGSRMYIPATCYTL 110
           +MHIEKNVC+N++GTLL++P+KSKDG+N+RLDLVEMNIRPELAP+ +G+R YIPA CYTL
Sbjct: 176 IMHIEKNVCMNIVGTLLDLPDKSKDGMNSRLDLVEMNIRPELAPMVTGNRTYIPAACYTL 235

[Close]

BLAST of ClCG01G012040 vs. NCBI nr
Match: XP_031741700.1 (uncharacterized protein LOC116403896 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-28
Identity = 68/127 (53.54%), Postives = 84/127 (66.14%), Query Frame = 0


Query: 15  PPEPLLEEAICMKLNKMIFSCEKK--------------------------------HCLD 74
           PP+PL +EA+ +K+  MIFSC KK                                HCLD
Sbjct: 473 PPQPLSDEAMYLKMKDMIFSCGKKCGKTVHNEGGNDYWKRRPAFFQLPYWKHLHVRHCLD 532

Query: 75  VMHIEKNVCINVIGTLLNIPEKSKDGINTRLDLVEMNIRPELAPVSSGSRMYIPATCYTL 110
           +MHIEKNVC+N++GTLL+IP KSKDG+NTRLDLVEM IRPELAP  +G+R YIPA CYTL
Sbjct: 533 IMHIEKNVCMNIVGTLLDIPGKSKDGMNTRLDLVEMKIRPELAPTFTGNRTYIPAACYTL 592

[Close]

BLAST of ClCG01G012040 vs. ExPASy TrEMBL
Match: A0A5A7VAX7 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold146G00100 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 4.0e-30
Identity = 72/127 (56.69%), Postives = 86/127 (67.72%), Query Frame = 0


Query: 14  SPPEPLLEEAICMKLNKMIFSCEKK-------------------------------HCLD 73
           +PP+PL  EAI  KL +MIFSC KK                               HCLD
Sbjct: 130 NPPQPLSGEAIYFKLKEMIFSCGKKCDKNNNEGGNDYWKRRSDFFELPYWKNLHVRHCLD 189

Query: 74  VMHIEKNVCINVIGTLLNIPEKSKDGINTRLDLVEMNIRPELAPVSSGSRMYIPATCYTL 110
           VMHIEKNVC+N++GTLLNIP KSKD +N+RLDLVEMNIRP+LAP+ +G+R YIPATCYTL
Sbjct: 190 VMHIEKNVCMNIVGTLLNIPGKSKDAMNSRLDLVEMNIRPKLAPMVTGNRTYIPATCYTL 249

[Close]

BLAST of ClCG01G012040 vs. ExPASy TrEMBL
Match: A0A5A7T3F8 (Transposase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G001930 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 6.9e-30
Identity = 67/94 (71.28%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 14  SPPEPLLEEAICMKLNKMIFSCEKKHCLDVMHIEKNVCINVIGTLLNIPEKSKDGINTRL 73
           +PP PL  E I  +L    F C K+HCLDVMHIEKNV +N+IGTLL+IP KSKDG++ RL
Sbjct: 438 TPPLPLSGETIYNRLKDKTFPCSKRHCLDVMHIEKNVLMNIIGTLLDIPGKSKDGLSARL 497

Query: 74  DLVEMNIRPELAPVSSGSRMYIPATCYTLSRKEK 108
           DLVEMNIRPELAPVS GSR YIPA CYTLSR+EK
Sbjct: 498 DLVEMNIRPELAPVSDGSRTYIPAACYTLSREEK 531

[Close]

BLAST of ClCG01G012040 vs. ExPASy TrEMBL
Match: A0A5D3CJ44 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold981G00060 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 6.9e-30
Identity = 72/127 (56.69%), Postives = 85/127 (66.93%), Query Frame = 0


Query: 14  SPPEPLLEEAICMKLNKMIFSCEKK-------------------------------HCLD 73
           +PP PL  EAI  KL +MIFSC KK                               HCLD
Sbjct: 46  NPPHPLSGEAIYFKLKEMIFSCGKKCGKNNNEGGNDYSKRRSNFFELPYWKNLHVRHCLD 105

Query: 74  VMHIEKNVCINVIGTLLNIPEKSKDGINTRLDLVEMNIRPELAPVSSGSRMYIPATCYTL 110
           VMHIEKNVC+N++GTLL+IP KSKDG+N+RLDLVEMNIRPELAP+ +G+R YIPA CYTL
Sbjct: 106 VMHIEKNVCMNIVGTLLDIPGKSKDGMNSRLDLVEMNIRPELAPMVTGNRTYIPAACYTL 165

[Close]

BLAST of ClCG01G012040 vs. ExPASy TrEMBL
Match: A0A5A7UBI8 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G001660 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.0e-29
Identity = 70/127 (55.12%), Postives = 86/127 (67.72%), Query Frame = 0


Query: 14  SPPEPLLEEAICMKLNKMIFSCEKK-------------------------------HCLD 73
           +PPEPL  EAI  KL +MIFS  KK                               HCLD
Sbjct: 116 NPPEPLSGEAIYFKLKEMIFSSGKKCGKNNNEGGNDYWKRRSEFFELPYWKNLHVRHCLD 175

Query: 74  VMHIEKNVCINVIGTLLNIPEKSKDGINTRLDLVEMNIRPELAPVSSGSRMYIPATCYTL 110
           +MHIEKNVC+N++GTLL++P+KSKDG+N+RLDLVEMNIRPELAP+ +G+R YIPA CYTL
Sbjct: 176 IMHIEKNVCMNIVGTLLDLPDKSKDGMNSRLDLVEMNIRPELAPMVTGNRTYIPAACYTL 235

[Close]

BLAST of ClCG01G012040 vs. ExPASy TrEMBL
Match: A0A5A7TBU6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G001530 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.7e-28
Identity = 69/126 (54.76%), Postives = 83/126 (65.87%), Query Frame = 0


Query: 14  SPPEPLLEEAICMKLNKMIFSCEKK-------------------------------HCLD 73
           +PP+PL  EAI  KL +MIFSC  K                               HCLD
Sbjct: 279 NPPQPLSGEAIYFKLKEMIFSCGNKCGKNNNEGDNNYWKRRSDFFELPYWKNLHVQHCLD 338

Query: 74  VMHIEKNVCINVIGTLLNIPEKSKDGINTRLDLVEMNIRPELAPVSSGSRMYIPATCYTL 109
           VMHIEKNVC+N++GTLL+IP KS+DG+N RLDLVE+NIRPELAP+  G+R YIPATCYTL
Sbjct: 339 VMHIEKNVCMNIVGTLLDIPRKSEDGMNNRLDLVEINIRPELAPMVRGNRSYIPATCYTL 398

The following BLAST results are available for this feature:

BLAST of ClCG01G012040 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062841.1	8.3e-30	56.69	transposase [Cucumis melo var. makuwa]	[more]
TYK11977.1	1.4e-29	56.69	transposase [Cucumis melo var. makuwa]	[more]
KAA0038004.1	1.4e-29	71.28	transposase-like protein [Cucumis melo var. makuwa]	[more]
KAA0051767.1	4.1e-29	55.12	transposase [Cucumis melo var. makuwa]	[more]
XP_031741700.1	1.2e-28	53.54	uncharacterized protein LOC116403896 [Cucumis sativus]	[more]

BLAST of ClCG01G012040 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG01G012040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VAX7	4.0e-30	56.69	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold146G00100 PE...	[more]
A0A5A7T3F8	6.9e-30	71.28	Transposase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3CJ44	6.9e-30	56.69	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold981G00060 PE...	[more]
A0A5A7UBI8	2.0e-29	55.12	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G001660 PE...	[more]
A0A5A7TBU6	1.7e-28	54.76	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of ClCG01G012040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10775	UNCHARACTERIZED	coord: 39..91
None	No IPR available	PANTHER	PTHR10775:SF132	SUBFAMILY NOT NAMED	coord: 39..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G012040.1	ClCG01G012040.1	mRNA