ClCG01G011370 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G011370
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr01: 18650152 .. 18651361 (+)
RNA-Seq Expression	ClCG01G011370
Synteny	ClCG01G011370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTTGCATTTCTCATCTCCATTCCAATGGGGCTTTTCAGAACCACAGTTGCCAATCAAAGCCTTTGCAAGTCCGTCAATTTCACTAATTTTTTTGCCATTGCTTCGCTTATCTTCAGCAAAAATCTCTCCTATGGTTTGTCGACCTTATAGATGAATTTGTACAAAAGTGATCGATGTTCTTCCTTTTCTTGATGAAACCCATATCAGTAATAACTTCATTTCCCTCTTTAGCCAACGAAAATTTTCCCCTGGGATGCAAAAGCTCCATCAAATTTTCTTCAAGCTACCGTATATTCCATCAAACTTCTCTAACTTTCTTTTGGAAGAACGACTAACCTTCCTTTGTCATTATCCCTGAAGTGCTTCCCACTTGAAACTGTTTTGTTGGTCTCTATATTTCTCTGCTGAAATGTATTACATGGCTGATCCTAAACATCTTTTCTTTGCATTTGTTGTCTTTTCTCCATTTTATGTTTAGCTTTGGTGGCCATTGTAACAGCTTCTACTAAAGAACTTATTGGTTAAAGTTCCATGTGATCTTGAATTTCATCTTTGAGGCAATCTATGAACCGCGTGATTTGATAATTTTCAATTTCGTTTATTCTTGTTCAAGCCTCCAACCTATGGAATTCCTCTATTAATCGGCTACACTGCGATTCCTTTGTTTACACTTCTGATATTGTTGCCCAACAAAAATCTAGCTTTCATCATCCTTAACATTCGCGACTAACTTTTAATGGGGTTCTTTCCCACGATCTTCGATTAAGTGAATATGGTCCCACCATGAAGAAGCTCTTGGTTTAAAAGTCATCAACTTCACCTTTTTATATTTTGGAGTATTCGTATAATTAAAGAAACTCTCTACACTCTTGGCCGAATCAAGAAAGGCTTCCAAATCAATTTTTTCGGTTAAATGTAGGCAAATCAATCTTCAACATTTGTAATCACTATGGTGGTCCTCCCTCTCTTGAGCATCTCTCACCAATTGTCTTTCTTCACAAACTCTTCAAATTAGTTCCCCTTCATCCCTTGAAAAATCAGAATCTAGCTCATCCCAGTCTAGTTATTGCTTTCTTTATCCTTCTTGTTTCGCTTGAATTCTCAATGGGGCATAGTAACATCCTCTATCAGGGGCATAGTAACATCCTCTATCATTAAATCTTTCTCTGTTGCTGATTTCAGGCCTCAGCTCTTCCAATCATAG

mRNA sequence

ATGGAACTTGCATTTCTCATCTCCATTCCAATGGGGCTTTTCAGAACCACAGTTGCCAATCAAAGCCTTTGCAAGTCCGTCAATTTCACTAATTTTTTTGCCATTGCTTCGCTTATCTTCAGCAAAAATCTCTCCTATGTGATCGATGTTCTTCCTTTTCTTGATGAAACCCATATCAGTAATAACTTCATTTCCCTCTTTAGCCAACGAAAATTTTCCCCTGGGATGCAAAAGCTCCATCAAATTTTCTTCAAGCTACCGCCTCAGCTCTTCCAATCATAG

Coding sequence (CDS)

ATGGAACTTGCATTTCTCATCTCCATTCCAATGGGGCTTTTCAGAACCACAGTTGCCAATCAAAGCCTTTGCAAGTCCGTCAATTTCACTAATTTTTTTGCCATTGCTTCGCTTATCTTCAGCAAAAATCTCTCCTATGTGATCGATGTTCTTCCTTTTCTTGATGAAACCCATATCAGTAATAACTTCATTTCCCTCTTTAGCCAACGAAAATTTTCCCCTGGGATGCAAAAGCTCCATCAAATTTTCTTCAAGCTACCGCCTCAGCTCTTCCAATCATAG

Protein sequence

MELAFLISIPMGLFRTTVANQSLCKSVNFTNFFAIASLIFSKNLSYVIDVLPFLDETHISNNFISLFSQRKFSPGMQKLHQIFFKLPPQLFQS

Homology

[Close]

BLAST of ClCG01G011370 vs. NCBI nr
Match: XP_038894372.1 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Benincasa hispida])

HSP 1 Score: 107.1 bits (266), Expect = 8.5e-20
Identity = 63/103 (61.17%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 2   ELAFLISIPMGLFRTTVANQSLCKSVNFTNFFAIASLIFSKNL-----------SYVIDV 61
           EL FLISIPM LF  T+ANQSLCKSVNFTN FAIASLIFSKNL           + VI+V
Sbjct: 24  ELEFLISIPMVLFGNTLANQSLCKSVNFTNLFAIASLIFSKNLPTVSRPYRSICTEVINV 83

Query: 62  LPFLDETHISNNFISLFSQRKFSPGMQKLHQIFFKLPPQLFQS 94
            P LDETHIS+NFISLFSQ+KFSP   KL  +  +L  ++ ++
Sbjct: 84  RPSLDETHISSNFISLFSQQKFSPDDPKLKNLASRLNTRIVET 126

[Close]

BLAST of ClCG01G011370 vs. NCBI nr
Match: XP_011654469.1 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Cucumis sativus] >XP_011654470.1 putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Cucumis sativus] >XP_011654471.1 putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Cucumis sativus] >KAE8648179.1 hypothetical protein Csa_018469 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 3.0e-17
Identity = 60/104 (57.69%), Postives = 72/104 (69.23%), Query Frame = 0


Query: 1   MELAFLISIPMGLFRTTVANQSLCKSVNFTNFFAIASLIFSKNLSY-----------VID 60
           MEL FLI IPM LF+TT+AN SL KS  FTN FA+AS IFSKNLSY           VI+
Sbjct: 1   MELEFLIYIPMALFKTTLANPSLSKSGKFTNSFAVASRIFSKNLSYVSQPYRSICTEVIN 60

Query: 61  VLPFLDETHISNNFISLFSQRKFSPGMQKLHQIFFKLPPQLFQS 94
           VLP LDET+ISNNFISLFSQ+KFS    +L  +   L P++ ++
Sbjct: 61  VLPPLDETYISNNFISLFSQQKFSLDDPQLKNLAPSLNPRIVET 104

[Close]

BLAST of ClCG01G011370 vs. NCBI nr
Match: XP_022141713.1 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Momordica charantia])

HSP 1 Score: 85.5 bits (210), Expect = 2.6e-13
Identity = 54/94 (57.45%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 11 MGLFRTTVANQSLCKSVNFTNFFAIASLIFSKNL-----SY------VIDVLPFLDETHI 70
          M L R T+ANQ+LCKS+NFTN  AIASLIF ++L     SY      VI+VLP LDETHI
Sbjct: 1  MALPRITLANQNLCKSLNFTNSVAIASLIFCESLPPVVKSYRPICTEVINVLPPLDETHI 60

Query: 71 SNNFISLFSQRKFSPGMQKLHQIFFKLPPQLFQS 94
          SNNFISLFSQRKFSP   +L  +  +L  Q+ ++
Sbjct: 61 SNNFISLFSQRKFSPDDPELKILAPRLNTQIVET 94

[Close]

BLAST of ClCG01G011370 vs. NCBI nr
Match: KAG6601987.1 (putative pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.8 bits (190), Expect = 5.5e-11
Identity = 50/96 (52.08%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 11 MGLFRTTVANQSLCKSVNFTNFFAIASLIFSKNLSYV-------------IDVLPFLDET 70
          M L R T ANQSL KSVNFTN  A  S+IF +NLS V             I+VLP  DE+
Sbjct: 1  MALSRITFANQSLWKSVNFTNSVAFISVIFGENLSSVVVSKSYRPICSEAINVLPSHDES 60

Query: 71 HISNNFISLFSQRKFSPGMQKLHQIFFKLPPQLFQS 94
          HISNNFISLFSQRKFSP   +L  +  +L  Q+ ++
Sbjct: 61 HISNNFISLFSQRKFSPDDPELKILAPRLNTQIVEN 96

[Close]

BLAST of ClCG01G011370 vs. NCBI nr
Match: KAG7032685.1 (putative pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.8 bits (190), Expect = 5.5e-11
Identity = 50/96 (52.08%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 11 MGLFRTTVANQSLCKSVNFTNFFAIASLIFSKNLSYV-------------IDVLPFLDET 70
          M L R T ANQSL KSVNFTN  A  S+IF +NLS V             I+VLP  DE+
Sbjct: 1  MALSRITFANQSLWKSVNFTNSVAFISVIFGENLSSVVVSKSYRPICSEAINVLPSHDES 60

Query: 71 HISNNFISLFSQRKFSPGMQKLHQIFFKLPPQLFQS 94
          HISNNFISLFSQRKFSP   +L  +  +L  Q+ ++
Sbjct: 61 HISNNFISLFSQRKFSPDDPELKILAPRLNTQIVEN 96

[Close]

BLAST of ClCG01G011370 vs. ExPASy TrEMBL
Match: A0A0A0KMI5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G021350 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 52/94 (55.32%), Postives = 64/94 (68.09%), Query Frame = 0


Query: 11 MGLFRTTVANQSLCKSVNFTNFFAIASLIFSKNLSY-----------VIDVLPFLDETHI 70
          M LF+TT+AN SL KS  FTN FA+AS IFSKNLSY           VI+VLP LDET+I
Sbjct: 1  MALFKTTLANPSLSKSGKFTNSFAVASRIFSKNLSYVSQPYRSICTEVINVLPPLDETYI 60

Query: 71 SNNFISLFSQRKFSPGMQKLHQIFFKLPPQLFQS 94
          SNNFISLFSQ+KFS    +L  +   L P++ ++
Sbjct: 61 SNNFISLFSQQKFSLDDPQLKNLAPSLNPRIVET 94

[Close]

BLAST of ClCG01G011370 vs. ExPASy TrEMBL
Match: A0A6J1CLB5 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111012005 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 54/94 (57.45%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 11 MGLFRTTVANQSLCKSVNFTNFFAIASLIFSKNL-----SY------VIDVLPFLDETHI 70
          M L R T+ANQ+LCKS+NFTN  AIASLIF ++L     SY      VI+VLP LDETHI
Sbjct: 1  MALPRITLANQNLCKSLNFTNSVAIASLIFCESLPPVVKSYRPICTEVINVLPPLDETHI 60

Query: 71 SNNFISLFSQRKFSPGMQKLHQIFFKLPPQLFQS 94
          SNNFISLFSQRKFSP   +L  +  +L  Q+ ++
Sbjct: 61 SNNFISLFSQRKFSPDDPELKILAPRLNTQIVET 94

[Close]

BLAST of ClCG01G011370 vs. ExPASy TrEMBL
Match: A0A6J1HIJ6 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464360 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 49/96 (51.04%), Postives = 59/96 (61.46%), Query Frame = 0


Query: 11 MGLFRTTVANQSLCKSVNFTNFFAIASLIFSKNLSYV-------------IDVLPFLDET 70
          M L R T ANQSL KSVNFTN  A  S+IF +NLS V             I+VLP  DE+
Sbjct: 1  MALSRITFANQSLWKSVNFTNSVAFISVIFGENLSSVVVSKSYRPICSEAINVLPSHDES 60

Query: 71 HISNNFISLFSQRKFSPGMQKLHQIFFKLPPQLFQS 94
          HISNNFISLFSQ KFSP   +L  +  +L  Q+ ++
Sbjct: 61 HISNNFISLFSQLKFSPDDPELKILAPRLNTQIVEN 96

[Close]

BLAST of ClCG01G011370 vs. ExPASy TrEMBL
Match: A0A6J1HMT3 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464360 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 49/96 (51.04%), Postives = 59/96 (61.46%), Query Frame = 0


Query: 11 MGLFRTTVANQSLCKSVNFTNFFAIASLIFSKNLSYV-------------IDVLPFLDET 70
          M L R T ANQSL KSVNFTN  A  S+IF +NLS V             I+VLP  DE+
Sbjct: 1  MALSRITFANQSLWKSVNFTNSVAFISVIFGENLSSVVVSKSYRPICSEAINVLPSHDES 60

Query: 71 HISNNFISLFSQRKFSPGMQKLHQIFFKLPPQLFQS 94
          HISNNFISLFSQ KFSP   +L  +  +L  Q+ ++
Sbjct: 61 HISNNFISLFSQLKFSPDDPELKILAPRLNTQIVEN 96

[Close]

BLAST of ClCG01G011370 vs. ExPASy TrEMBL
Match: A0A6J1HKH1 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111464360 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 49/96 (51.04%), Postives = 59/96 (61.46%), Query Frame = 0


Query: 11 MGLFRTTVANQSLCKSVNFTNFFAIASLIFSKNLSYV-------------IDVLPFLDET 70
          M L R T ANQSL KSVNFTN  A  S+IF +NLS V             I+VLP  DE+
Sbjct: 1  MALSRITFANQSLWKSVNFTNSVAFISVIFGENLSSVVVSKSYRPICSEAINVLPSHDES 60

Query: 71 HISNNFISLFSQRKFSPGMQKLHQIFFKLPPQLFQS 94
          HISNNFISLFSQ KFSP   +L  +  +L  Q+ ++
Sbjct: 61 HISNNFISLFSQLKFSPDDPELKILAPRLNTQIVEN 96

The following BLAST results are available for this feature:

BLAST of ClCG01G011370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894372.1	8.5e-20	61.17	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08...	[more]
XP_011654469.1	3.0e-17	57.69	putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [C...	[more]
XP_022141713.1	2.6e-13	57.45	putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [M...	[more]
KAG6601987.1	5.5e-11	52.08	putative pentatricopeptide repeat-containing protein, mitochondrial, partial [Cu...	[more]
KAG7032685.1	5.5e-11	52.08	putative pentatricopeptide repeat-containing protein, mitochondrial, partial [Cu...	[more]

BLAST of ClCG01G011370 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG01G011370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMI5	1.3e-13	55.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G021350 PE=4 SV=1	[more]
A0A6J1CLB5	1.3e-13	57.45	putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS...	[more]
A0A6J1HIJ6	1.7e-10	51.04	putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial is...	[more]
A0A6J1HMT3	1.7e-10	51.04	putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial is...	[more]
A0A6J1HKH1	1.7e-10	51.04	putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial is...	[more]

BLAST of ClCG01G011370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G011370.1	ClCG01G011370.1	mRNA