ClCG01G011250 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G011250
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	DNA-directed RNA polymerase subunit beta
Location	CG_Chr01: 18293053 .. 18294487 (+)
RNA-Seq Expression	ClCG01G011250
Synteny	ClCG01G011250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGAACAAACAATTTTTATTGGAAACATTCTCCTAATGAATTCCCCGGGAACTTCTATAGTAAATGGACTATATAGAATTGTGATCAGTCAAATATTGCAAAGCCCCGACATCTATTACTGGTAAGAATTGGACCATAACGAAATTTCAGTCTATACCAGCACCATAATATCTGATTGGGGCGGAAGATTAGAATTAGAGATTGATCGAAAAGCAAGGATATGGGCTCGTGTGAGTAGGAAACATAAAATATCTATTCTAGTTCTATCATCAGCTATGGGTTCAAATCTAAGATAAATTCTCGAGAATGTTTGCTACCCTGAAATTTGTTTGTCTTTCCTGAATGATAAGGAGAAAAATCAAATTGGATCAAAAGAAAATGCCATTTTGGAATTTTATCAACAATTTTCTTATGTAGGCAGAGATCCAGTATTTTTTGAATCCTTATGTAAGCAATTACAAAAGAAATTCTTTCAACAAAGATGTGAATTAGGAAGGATTGGTTGACAAAATATGAACCAGAGACTTAATCTTAATATACCTGAGAACAATACATTTTGTTACCGCGAGATATACTGGCAGCTGCAAATCATTTGATTGGACTAAAATTTGGAATGGGTACACTTGACGATATGAATCATTTTAAAAATAAACGGATTTGTTCTGTTACGGATCTCTTACAAGATCAATTCTTCTTGGCTCTAGTTCATTTAGAAAATAAGGTTAGAGGAACTATATGTGGAGCAATTAGACTTAAATTGATACCGACTCCTCAGAATTTGGTAACTTCAACTCCATTAACAACTACATTTGAATCTTTTTTGAGATTACACCAATTATCTCAAGTTTTAGATCGAACTAATCCATTGACACAAAAGTCTATACGATCTAGGCGTGTATTCAGAGGTGCCCAAGCAATCCCAAGGAGAACTACTGCAATCTGTGCCTTTAATAACTCAAGAATAACTCGATCCATTTGCTACAGGACCGTCTTCTTATCCCCAATTCCAGCAAAAATCCAACAACTAATCCGCTTTGAGGTTCCGAAGTGTAGTTTATTCGTTAAGCTGCGATTAGAGTCCTCTTGAAAGTGGGGTATGCATTTTCAATCGTAACCAGAAGAAGAAGAAGATTCCACATTAGTTGTAGTACCAACAGGCTAACCATACAGGGGGCAATTGATTGAAAGAGAGGTGAATGAAGGACATAGGAAGCCTATTAGTTTTGGGAGAAGGGGGCCAAAGTGGTAGATTAGATAAGACTTTTGCACCATTACGGGCTCAACGCTTTTCCTTTCCAATCAACTAGGCGTTTAAGCACCTTATCCACCAACGGGGAATATAATTCCTTAGAGGCCCTACCAACAAGCCATACTTGGCATTTAGGTATCCACTTCAAAAGAAACCCATCTAAAACTACCTATAGGCGGTAG

mRNA sequence

ATGCAAGAACAAACAATTTTTATTGGAAACATTCTCCTAATGAATTCCCCGGGAACTTCTATAGTAAATGGACTATATAGAATTGTGATCAGTCAAATATTGCAAAGCCCCGACATCTATTACTGCACCATAATATCTGATTGGGGCGGAAGATTAGAATTAGAGATTGATCGAAAAGCAAGGATATGGGCTCGTGAGAAAAATCAAATTGGATCAAAAGAAAATGCCATTTTGGAATTTTATCAACAATTTTCTTATGTAGGCAGAGATCCAGTATTTTTTGAATCCTTATGTAAGCAATTACAAAAGAAATTCTTTCAACAAAGATGTGAATTAGGAAGGATTGAACAATACATTTTGTTACCGCGAGATATACTGGCAGCTGCAAATCATTTGATTGGACTAAAATTTGGAATGGGTACACTTGACGATATGAATCATTTTAAAAATAAACGGATTTGTTCTGTTACGGATCTCTTACAAGATCAATTCTTCTTGGCTCTAGTTCATTTAGAAAATAAGGTTAGAGGAACTATATGTGGAGCAATTAGACTTAAATTGATACCGACTCCTCAGAATTTGGTAACTTCAACTCCATTAACAACTACATTTGAATCTTTTTTGAGATTACACCAATTATCTCAAGTTTTAGATCGAACTAATCCATTGACACAAAAGTCTATACGATCTAGGCGTGTATTCAGAGGTGCCCAAGCAATCCCAAGGAGAACTACTGCAATCTGTGCCTTTAATAACTCAAGAATAACTCGATCCATTTGCTACAGGACCGTCTTCTTATCCCCAATTCCAGCAAAAATCCAACAACTAATCCGCTTTGAGGTTCCGAAGCGTTTAAGCACCTTATCCACCAACGGGGAATATAATTCCTTAGAGGCCCTACCAACAAGCCATACTTGGCATTTAGGTATCCACTTCAAAAGAAACCCATCTAAAACTACCTATAGGCGGTAG

Coding sequence (CDS)

ATGCAAGAACAAACAATTTTTATTGGAAACATTCTCCTAATGAATTCCCCGGGAACTTCTATAGTAAATGGACTATATAGAATTGTGATCAGTCAAATATTGCAAAGCCCCGACATCTATTACTGCACCATAATATCTGATTGGGGCGGAAGATTAGAATTAGAGATTGATCGAAAAGCAAGGATATGGGCTCGTGAGAAAAATCAAATTGGATCAAAAGAAAATGCCATTTTGGAATTTTATCAACAATTTTCTTATGTAGGCAGAGATCCAGTATTTTTTGAATCCTTATGTAAGCAATTACAAAAGAAATTCTTTCAACAAAGATGTGAATTAGGAAGGATTGAACAATACATTTTGTTACCGCGAGATATACTGGCAGCTGCAAATCATTTGATTGGACTAAAATTTGGAATGGGTACACTTGACGATATGAATCATTTTAAAAATAAACGGATTTGTTCTGTTACGGATCTCTTACAAGATCAATTCTTCTTGGCTCTAGTTCATTTAGAAAATAAGGTTAGAGGAACTATATGTGGAGCAATTAGACTTAAATTGATACCGACTCCTCAGAATTTGGTAACTTCAACTCCATTAACAACTACATTTGAATCTTTTTTGAGATTACACCAATTATCTCAAGTTTTAGATCGAACTAATCCATTGACACAAAAGTCTATACGATCTAGGCGTGTATTCAGAGGTGCCCAAGCAATCCCAAGGAGAACTACTGCAATCTGTGCCTTTAATAACTCAAGAATAACTCGATCCATTTGCTACAGGACCGTCTTCTTATCCCCAATTCCAGCAAAAATCCAACAACTAATCCGCTTTGAGGTTCCGAAGCGTTTAAGCACCTTATCCACCAACGGGGAATATAATTCCTTAGAGGCCCTACCAACAAGCCATACTTGGCATTTAGGTATCCACTTCAAAAGAAACCCATCTAAAACTACCTATAGGCGGTAG

Protein sequence

MQEQTIFIGNILLMNSPGTSIVNGLYRIVISQILQSPDIYYCTIISDWGGRLELEIDRKARIWAREKNQIGSKENAILEFYQQFSYVGRDPVFFESLCKQLQKKFFQQRCELGRIEQYILLPRDILAAANHLIGLKFGMGTLDDMNHFKNKRICSVTDLLQDQFFLALVHLENKVRGTICGAIRLKLIPTPQNLVTSTPLTTTFESFLRLHQLSQVLDRTNPLTQKSIRSRRVFRGAQAIPRRTTAICAFNNSRITRSICYRTVFLSPIPAKIQQLIRFEVPKRLSTLSTNGEYNSLEALPTSHTWHLGIHFKRNPSKTTYRR

Homology

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BLAST of ClCG01G011250 vs. NCBI nr
Match: APW82623.1 (RNA polymerase beta subunit [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 350.5 bits (898), Expect = 1.5e-92
Identity = 204/314 (64.97%), Postives = 211/314 (67.20%), Query Frame = 0


Query: 1   MQEQTIFIGNILLMNSPGTSIVNGLYRIVISQILQSPDIYY-------------CTIISD 60
           MQEQTIFIGNI LMNS GTSIVNGLYRIVISQILQSP IYY              TIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWAR----------------------------------------EK 120
           WGGRLELEIDRKARIWAR                                        EK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 213

Query: 121 NQIGSKENAILEFYQQFSYVGRDPVFFESLCKQLQKKFFQQRCELGRI------------ 180
           N+IGSKENAILEFYQQFS VG DPVF ESLCK+LQKKFFQQRCELGRI            
Sbjct: 214 NKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 273

Query: 181 ---EQYILLPRDILAAANHLIGLKFGMGTLDDMNHFKNKRICSVTDLLQDQFFLALVHLE 240
                  LLPRDILAAA+HLIGLKFGMGTLDDMNH KNKRI SV DLLQDQF LALV LE
Sbjct: 274 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NKVRGTICGAIRLKLIPTPQNLVTSTPLTTTFESFLRLHQLSQVLDRTNPLTQKSIRSRR 247
           N VRGTICGAIR KLIPTPQNLVTSTPLTTTFESF  LH LSQVLDRTNPLTQ     + 
Sbjct: 334 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 393

[Close]

BLAST of ClCG01G011250 vs. NCBI nr
Match: YP_009325981.1 (RNA polymerase beta subunit [Citrullus lanatus] >YP_009348023.1 RNA polymerase beta subunit [Citrullus mucosospermus] >APW82878.1 RNA polymerase beta subunit [Citrullus lanatus subsp. vulgaris] >APD52472.1 RNA polymerase beta subunit [Citrullus lanatus] >APW82708.1 RNA polymerase beta subunit [Citrullus mucosospermus] >APW82793.1 RNA polymerase beta subunit [Citrullus mucosospermus] >APW82963.1 RNA polymerase beta subunit [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 350.5 bits (898), Expect = 1.5e-92
Identity = 204/314 (64.97%), Postives = 211/314 (67.20%), Query Frame = 0


Query: 1   MQEQTIFIGNILLMNSPGTSIVNGLYRIVISQILQSPDIYY-------------CTIISD 60
           MQEQTIFIGNI LMNS GTSIVNGLYRIVISQILQSP IYY              TIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWAR----------------------------------------EK 120
           WGGRLELEIDRKARIWAR                                        EK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 213

Query: 121 NQIGSKENAILEFYQQFSYVGRDPVFFESLCKQLQKKFFQQRCELGRI------------ 180
           N+IGSKENAILEFYQQFS VG DPVF ESLCK+LQKKFFQQRCELGRI            
Sbjct: 214 NKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 273

Query: 181 ---EQYILLPRDILAAANHLIGLKFGMGTLDDMNHFKNKRICSVTDLLQDQFFLALVHLE 240
                  LLPRDILAAA+HLIGLKFGMGTLDDMNH KNKRI SV DLLQDQF LALV LE
Sbjct: 274 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NKVRGTICGAIRLKLIPTPQNLVTSTPLTTTFESFLRLHQLSQVLDRTNPLTQKSIRSRR 247
           N VRGTICGAIR KLIPTPQNLVTSTPLTTTFESF  LH LSQVLDRTNPLTQ     + 
Sbjct: 334 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 393

[Close]

BLAST of ClCG01G011250 vs. NCBI nr
Match: YP_009420786.1 (RNA polymerase beta subunit [Citrullus colocynthis] >YP_009431549.1 RNA polymerase beta subunit [Citrullus amarus] >YP_009431634.1 RNA polymerase beta subunit [Citrullus rehmii] >APW82453.1 RNA polymerase beta subunit [Citrullus lanatus subsp. vulgaris] >QZL38673.1 RNA polymerase beta subunit [Citrullus ecirrhosus] >APW82538.1 RNA polymerase beta subunit [Citrullus lanatus subsp. vulgaris] >ASP44476.1 RNA polymerase beta subunit [Citrullus colocynthis] >ASY96172.1 RNA polymerase beta subunit [Citrullus amarus])

HSP 1 Score: 350.5 bits (898), Expect = 1.5e-92
Identity = 204/314 (64.97%), Postives = 211/314 (67.20%), Query Frame = 0


Query: 1   MQEQTIFIGNILLMNSPGTSIVNGLYRIVISQILQSPDIYY-------------CTIISD 60
           MQEQTIFIGNI LMNS GTSIVNGLYRIVISQILQSP IYY              TIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWAR----------------------------------------EK 120
           WGGRLELEIDRKARIWAR                                        EK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 213

Query: 121 NQIGSKENAILEFYQQFSYVGRDPVFFESLCKQLQKKFFQQRCELGRI------------ 180
           N+IGSKENAILEFYQQFS VG DPVF ESLCK+LQKKFFQQRCELGRI            
Sbjct: 214 NKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 273

Query: 181 ---EQYILLPRDILAAANHLIGLKFGMGTLDDMNHFKNKRICSVTDLLQDQFFLALVHLE 240
                  LLPRDILAAA+HLIGLKFGMGTLDDMNH KNKRI SV DLLQDQF LALV LE
Sbjct: 274 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NKVRGTICGAIRLKLIPTPQNLVTSTPLTTTFESFLRLHQLSQVLDRTNPLTQKSIRSRR 247
           N VRGTICGAIR KLIPTPQNLVTSTPLTTTFESF  LH LSQVLDRTNPLTQ     + 
Sbjct: 334 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 393

[Close]

BLAST of ClCG01G011250 vs. NCBI nr
Match: QHD47277.1 (RNA polymerase beta subunit [Dalbergia odorifera])

HSP 1 Score: 348.6 bits (893), Expect = 5.8e-92
Identity = 196/293 (66.89%), Postives = 205/293 (69.97%), Query Frame = 0


Query: 1   MQEQTIFIGNILLMNSPGTSIVNGLYRIVISQILQSPDIYY-------------CTIISD 60
           +QEQTIFIGNI LMNS GTSIVNG+YRIVI+QILQSP IYY              TIISD
Sbjct: 94  IQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYRSELDHNGILVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWAR----------------------------------------EK 120
           WGGRLELEIDRKARIWAR                                        EK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLLSAMGSNLSEILENVCYPEIFLSFLNDKEK 213

Query: 121 NQIGSKENAILEFYQQFSYVGRDPVFFESLCKQLQKKFFQQRCELGRI------------ 180
            +IGSKENAILEFYQQF+YVG DPVF ESLCK+LQKKFFQQRCELGRI            
Sbjct: 214 KEIGSKENAILEFYQQFAYVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNMNQRLNLD 273

Query: 181 ---EQYILLPRDILAAANHLIGLKFGMGTLDDMNHFKNKRICSVTDLLQDQFFLALVHLE 226
                  LLPRDILAAA+HLIG+KFGMGTLDDMNH KNKRI SV DLLQDQF LALV LE
Sbjct: 274 IPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

[Close]

BLAST of ClCG01G011250 vs. NCBI nr
Match: AHM89856.1 (RNA polymerase beta subunit [Lagenaria siceraria])

HSP 1 Score: 348.2 bits (892), Expect = 7.6e-92
Identity = 203/314 (64.65%), Postives = 210/314 (66.88%), Query Frame = 0


Query: 1   MQEQTIFIGNILLMNSPGTSIVNGLYRIVISQILQSPDIYY-------------CTIISD 60
           MQEQTIFIGNI LMNS GTSIVNGLYRIVISQILQSP IYY              TIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWAR----------------------------------------EK 120
           WGGRLELEIDRKARIWAR                                        EK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 213

Query: 121 NQIGSKENAILEFYQQFSYVGRDPVFFESLCKQLQKKFFQQRCELGRI------------ 180
            +IGSKENAILEFYQQFS VG DPVF ESLCK+LQKKFFQQRCELGRI            
Sbjct: 214 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 273

Query: 181 ---EQYILLPRDILAAANHLIGLKFGMGTLDDMNHFKNKRICSVTDLLQDQFFLALVHLE 240
                  LLPRDILAAA+HLIGLKFGMGTLDDMNH KNKRI SV DLLQDQF LALV LE
Sbjct: 274 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NKVRGTICGAIRLKLIPTPQNLVTSTPLTTTFESFLRLHQLSQVLDRTNPLTQKSIRSRR 247
           N VRGTICGAIR KLIPTPQNLVTSTPLTTTFESF  LH LSQVLDRTNPLTQ     + 
Sbjct: 334 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 393

[Close]

BLAST of ClCG01G011250 vs. ExPASy Swiss-Prot
Match: Q4VZP1 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3 SV=2)

HSP 1 Score: 345.1 bits (884), Expect = 8.4e-94
Identity = 202/314 (64.33%), Postives = 209/314 (66.56%), Query Frame = 0


Query: 1   MQEQTIFIGNILLMNSPGTSIVNGLYRIVISQILQSPDIYY-------------CTIISD 60
           MQEQTIFIGNI LMNS GTSIVNGLYRIVISQILQSP IYY              TIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWAR----------------------------------------EK 120
           WGGRLELEIDRKARIWAR                                        EK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 213

Query: 121 NQIGSKENAILEFYQQFSYVGRDPVFFESLCKQLQKKFFQQRCELGRI------------ 180
            +IGSKENAILEFYQQFS VG DPVF ESLCK+LQKKFFQQRCELGRI            
Sbjct: 214 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 273

Query: 181 ---EQYILLPRDILAAANHLIGLKFGMGTLDDMNHFKNKRICSVTDLLQDQFFLALVHLE 240
                  LL RDILAAA+HLIGLKFGMGTLDDMNH KNKRI SV DLLQDQF LALV LE
Sbjct: 274 IPENNTFLLQRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NKVRGTICGAIRLKLIPTPQNLVTSTPLTTTFESFLRLHQLSQVLDRTNPLTQKSIRSRR 247
           N VRGTICGAIR KLIPTPQNLVTSTPLTTTFESF  LH LSQVLDRTNPLTQ     + 
Sbjct: 334 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 393

[Close]

BLAST of ClCG01G011250 vs. ExPASy Swiss-Prot
Match: Q49L06 (DNA-directed RNA polymerase subunit beta OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoB PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.6e-92
Identity = 196/314 (62.42%), Postives = 210/314 (66.88%), Query Frame = 0


Query: 1   MQEQTIFIGNILLMNSPGTSIVNGLYRIVISQILQSPDIYY-------------CTIISD 60
           MQEQT+FIGNI LMNS GTSIVNG+YRIVI+QILQSP IYY              TIISD
Sbjct: 94  MQEQTLFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWAR----------------------------------------EK 120
           WGGRLELEIDRKARIWAR                                        EK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 213

Query: 121 NQIGSKENAILEFYQQFSYVGRDPVFFESLCKQLQKKFFQQRCELGRI------------ 180
            +IGSKENAILEFYQQF+ VG DPVF ESLCK+LQKKFFQQRCELGRI            
Sbjct: 214 KKIGSKENAILEFYQQFACVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNMNRRLNLD 273

Query: 181 ---EQYILLPRDILAAANHLIGLKFGMGTLDDMNHFKNKRICSVTDLLQDQFFLALVHLE 240
                  LLPRDILAAA+HLIG+KFGMGTLDDMNH KNKRI SV DLLQDQF LALV LE
Sbjct: 274 IPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NKVRGTICGAIRLKLIPTPQNLVTSTPLTTTFESFLRLHQLSQVLDRTNPLTQKSIRSRR 247
           N V+GTICGAIR KLIPTPQNLVTSTPLTTT+ESF  LH LSQVLDRTNPLTQ     + 
Sbjct: 334 NVVKGTICGAIRHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKL 393

[Close]

BLAST of ClCG01G011250 vs. ExPASy Swiss-Prot
Match: Q0G9M7 (DNA-directed RNA polymerase subunit beta OS=Liriodendron tulipifera OX=3415 GN=rpoB PE=3 SV=2)

HSP 1 Score: 339.3 bits (869), Expect = 4.6e-92
Identity = 194/314 (61.78%), Postives = 209/314 (66.56%), Query Frame = 0


Query: 1   MQEQTIFIGNILLMNSPGTSIVNGLYRIVISQILQSPDIYY-------------CTIISD 60
           MQEQT+FIGNI LMNS GTSIVNG+YRIVI+QILQSP IYY              TIISD
Sbjct: 94  MQEQTVFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWAR----------------------------------------EK 120
           WGGR ELEIDRKARIWAR                                        EK
Sbjct: 154 WGGRSELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILDNVCYPEIFLSFPNDKEK 213

Query: 121 NQIGSKENAILEFYQQFSYVGRDPVFFESLCKQLQKKFFQQRCELGRI------------ 180
            +IGS+ENAILEFYQQF+ VG DPVF ESLCK+LQKKFFQQRCELGRI            
Sbjct: 214 KKIGSRENAILEFYQQFACVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNMNRRLNLD 273

Query: 181 ---EQYILLPRDILAAANHLIGLKFGMGTLDDMNHFKNKRICSVTDLLQDQFFLALVHLE 240
                  LLPRD+LAAA+HLIG+KFGMGTLDDMNH KNKRI SV DLLQDQF LALV LE
Sbjct: 274 IPQNNTFLLPRDVLAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NKVRGTICGAIRLKLIPTPQNLVTSTPLTTTFESFLRLHQLSQVLDRTNPLTQKSIRSRR 247
           N VRGTICGAIR KLIPTPQNLVTSTPLTTT+ESF  LH LSQVLDRTNPLTQ     + 
Sbjct: 334 NAVRGTICGAIRHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKS 393

[Close]

BLAST of ClCG01G011250 vs. ExPASy Swiss-Prot
Match: Q09G54 (DNA-directed RNA polymerase subunit beta OS=Platanus occidentalis OX=4403 GN=rpoB PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 4.6e-92
Identity = 194/314 (61.78%), Postives = 209/314 (66.56%), Query Frame = 0


Query: 1   MQEQTIFIGNILLMNSPGTSIVNGLYRIVISQILQSPDIYY-------------CTIISD 60
           MQEQTIFIGNI LMNS GTSIVNG+YRIVI+QILQSP IYY              TIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYRSESDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWAR----------------------------------------EK 120
           WGGR ELEIDRKARIWAR                                        EK
Sbjct: 154 WGGRSELEIDRKARIWARVSRKQKISILVPSSAMGSNLREILDNVCYPEIFLSFLNDKEK 213

Query: 121 NQIGSKENAILEFYQQFSYVGRDPVFFESLCKQLQKKFFQQRCELGRI------------ 180
            +IGSKENAILEFYQQF+ VG DPVF ESLCK+LQKKFFQQRCELGRI            
Sbjct: 214 KKIGSKENAILEFYQQFACVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNMNRRLNLD 273

Query: 181 ---EQYILLPRDILAAANHLIGLKFGMGTLDDMNHFKNKRICSVTDLLQDQFFLALVHLE 240
                  LLPRD+LAAA+HLIG+KFGMGTLDDMNH KNKRI SV DLLQDQF LAL+ LE
Sbjct: 274 IPQNNTFLLPRDVLAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALIRLE 333

Query: 241 NKVRGTICGAIRLKLIPTPQNLVTSTPLTTTFESFLRLHQLSQVLDRTNPLTQKSIRSRR 247
           N VRGTICGAI+ KLIPTPQNLVTSTPLTTT+ESF  LH LSQVLDRTNPLTQ     + 
Sbjct: 334 NVVRGTICGAIKHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQMVHGRKL 393

[Close]

BLAST of ClCG01G011250 vs. ExPASy Swiss-Prot
Match: A0ZZ27 (DNA-directed RNA polymerase subunit beta OS=Gossypium barbadense OX=3634 GN=rpoB PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 6.0e-92
Identity = 194/293 (66.21%), Postives = 201/293 (68.60%), Query Frame = 0


Query: 1   MQEQTIFIGNILLMNSPGTSIVNGLYRIVISQILQSPDIYY-------------CTIISD 60
           MQEQTIFIGNI LMNS GTSIVNG+YRIVI+QILQSP IYY              TIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWAR----------------------------------------EK 120
           WGGRLELEIDRKARIWAR                                        EK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLTDKEK 213

Query: 121 NQIGSKENAILEFYQQFSYVGRDPVFFESLCKQLQKKFFQQRCELGRI------------ 180
            +IGSKENAILEFYQQFS VG DPVF ESLCK+LQKKFFQQRCELGRI            
Sbjct: 214 KKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNMNQRLNLN 273

Query: 181 ---EQYILLPRDILAAANHLIGLKFGMGTLDDMNHFKNKRICSVTDLLQDQFFLALVHLE 226
                  LLPRDILAAA+ LIG+KFGMG LDDMNH KNKRI SV DLLQDQF LALV LE
Sbjct: 274 IPQNNTFLLPRDILAAADRLIGMKFGMGPLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

[Close]

BLAST of ClCG01G011250 vs. ExPASy TrEMBL
Match: A0A1P8LDX8 (DNA-directed RNA polymerase subunit beta OS=Citrullus mucosospermus OX=519315 GN=rpoB PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 7.4e-93
Identity = 204/314 (64.97%), Postives = 211/314 (67.20%), Query Frame = 0


Query: 1   MQEQTIFIGNILLMNSPGTSIVNGLYRIVISQILQSPDIYY-------------CTIISD 60
           MQEQTIFIGNI LMNS GTSIVNGLYRIVISQILQSP IYY              TIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWAR----------------------------------------EK 120
           WGGRLELEIDRKARIWAR                                        EK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 213

Query: 121 NQIGSKENAILEFYQQFSYVGRDPVFFESLCKQLQKKFFQQRCELGRI------------ 180
           N+IGSKENAILEFYQQFS VG DPVF ESLCK+LQKKFFQQRCELGRI            
Sbjct: 214 NKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 273

Query: 181 ---EQYILLPRDILAAANHLIGLKFGMGTLDDMNHFKNKRICSVTDLLQDQFFLALVHLE 240
                  LLPRDILAAA+HLIGLKFGMGTLDDMNH KNKRI SV DLLQDQF LALV LE
Sbjct: 274 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NKVRGTICGAIRLKLIPTPQNLVTSTPLTTTFESFLRLHQLSQVLDRTNPLTQKSIRSRR 247
           N VRGTICGAIR KLIPTPQNLVTSTPLTTTFESF  LH LSQVLDRTNPLTQ     + 
Sbjct: 334 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 393

[Close]

BLAST of ClCG01G011250 vs. ExPASy TrEMBL
Match: A0A1P8LF53 (DNA-directed RNA polymerase subunit beta OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rpoB PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 7.4e-93
Identity = 204/314 (64.97%), Postives = 211/314 (67.20%), Query Frame = 0


Query: 1   MQEQTIFIGNILLMNSPGTSIVNGLYRIVISQILQSPDIYY-------------CTIISD 60
           MQEQTIFIGNI LMNS GTSIVNGLYRIVISQILQSP IYY              TIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWAR----------------------------------------EK 120
           WGGRLELEIDRKARIWAR                                        EK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 213

Query: 121 NQIGSKENAILEFYQQFSYVGRDPVFFESLCKQLQKKFFQQRCELGRI------------ 180
           N+IGSKENAILEFYQQFS VG DPVF ESLCK+LQKKFFQQRCELGRI            
Sbjct: 214 NKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 273

Query: 181 ---EQYILLPRDILAAANHLIGLKFGMGTLDDMNHFKNKRICSVTDLLQDQFFLALVHLE 240
                  LLPRDILAAA+HLIGLKFGMGTLDDMNH KNKRI SV DLLQDQF LALV LE
Sbjct: 274 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NKVRGTICGAIRLKLIPTPQNLVTSTPLTTTFESFLRLHQLSQVLDRTNPLTQKSIRSRR 247
           N VRGTICGAIR KLIPTPQNLVTSTPLTTTFESF  LH LSQVLDRTNPLTQ     + 
Sbjct: 334 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 393

[Close]

BLAST of ClCG01G011250 vs. ExPASy TrEMBL
Match: A0A1P8LD96 (DNA-directed RNA polymerase subunit beta OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rpoB PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 7.4e-93
Identity = 204/314 (64.97%), Postives = 211/314 (67.20%), Query Frame = 0


Query: 1   MQEQTIFIGNILLMNSPGTSIVNGLYRIVISQILQSPDIYY-------------CTIISD 60
           MQEQTIFIGNI LMNS GTSIVNGLYRIVISQILQSP IYY              TIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWAR----------------------------------------EK 120
           WGGRLELEIDRKARIWAR                                        EK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 213

Query: 121 NQIGSKENAILEFYQQFSYVGRDPVFFESLCKQLQKKFFQQRCELGRI------------ 180
           N+IGSKENAILEFYQQFS VG DPVF ESLCK+LQKKFFQQRCELGRI            
Sbjct: 214 NKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 273

Query: 181 ---EQYILLPRDILAAANHLIGLKFGMGTLDDMNHFKNKRICSVTDLLQDQFFLALVHLE 240
                  LLPRDILAAA+HLIGLKFGMGTLDDMNH KNKRI SV DLLQDQF LALV LE
Sbjct: 274 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NKVRGTICGAIRLKLIPTPQNLVTSTPLTTTFESFLRLHQLSQVLDRTNPLTQKSIRSRR 247
           N VRGTICGAIR KLIPTPQNLVTSTPLTTTFESF  LH LSQVLDRTNPLTQ     + 
Sbjct: 334 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 393

[Close]

BLAST of ClCG01G011250 vs. ExPASy TrEMBL
Match: A0A343A8A2 (DNA-directed RNA polymerase subunit beta OS=Citrullus lanatus OX=3654 GN=rpoB PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 7.4e-93
Identity = 204/314 (64.97%), Postives = 211/314 (67.20%), Query Frame = 0


Query: 1   MQEQTIFIGNILLMNSPGTSIVNGLYRIVISQILQSPDIYY-------------CTIISD 60
           MQEQTIFIGNI LMNS GTSIVNGLYRIVISQILQSP IYY              TIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWAR----------------------------------------EK 120
           WGGRLELEIDRKARIWAR                                        EK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 213

Query: 121 NQIGSKENAILEFYQQFSYVGRDPVFFESLCKQLQKKFFQQRCELGRI------------ 180
           N+IGSKENAILEFYQQFS VG DPVF ESLCK+LQKKFFQQRCELGRI            
Sbjct: 214 NKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 273

Query: 181 ---EQYILLPRDILAAANHLIGLKFGMGTLDDMNHFKNKRICSVTDLLQDQFFLALVHLE 240
                  LLPRDILAAA+HLIGLKFGMGTLDDMNH KNKRI SV DLLQDQF LALV LE
Sbjct: 274 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NKVRGTICGAIRLKLIPTPQNLVTSTPLTTTFESFLRLHQLSQVLDRTNPLTQKSIRSRR 247
           N VRGTICGAIR KLIPTPQNLVTSTPLTTTFESF  LH LSQVLDRTNPLTQ     + 
Sbjct: 334 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 393

[Close]

BLAST of ClCG01G011250 vs. ExPASy TrEMBL
Match: A0A249RXB4 (DNA-directed RNA polymerase subunit beta OS=Citrullus rehmii OX=260675 GN=rpoB PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 7.4e-93
Identity = 204/314 (64.97%), Postives = 211/314 (67.20%), Query Frame = 0


Query: 1   MQEQTIFIGNILLMNSPGTSIVNGLYRIVISQILQSPDIYY-------------CTIISD 60
           MQEQTIFIGNI LMNS GTSIVNGLYRIVISQILQSP IYY              TIISD
Sbjct: 94  MQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWAR----------------------------------------EK 120
           WGGRLELEIDRKARIWAR                                        EK
Sbjct: 154 WGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEK 213

Query: 121 NQIGSKENAILEFYQQFSYVGRDPVFFESLCKQLQKKFFQQRCELGRI------------ 180
           N+IGSKENAILEFYQQFS VG DPVF ESLCK+LQKKFFQQRCELGRI            
Sbjct: 214 NKIGSKENAILEFYQQFSCVGGDPVFSESLCKELQKKFFQQRCELGRIGRRNLNQRLNLD 273

Query: 181 ---EQYILLPRDILAAANHLIGLKFGMGTLDDMNHFKNKRICSVTDLLQDQFFLALVHLE 240
                  LLPRDILAAA+HLIGLKFGMGTLDDMNH KNKRI SV DLLQDQF LALV LE
Sbjct: 274 IPENNTFLLPRDILAAADHLIGLKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE 333

Query: 241 NKVRGTICGAIRLKLIPTPQNLVTSTPLTTTFESFLRLHQLSQVLDRTNPLTQKSIRSRR 247
           N VRGTICGAIR KLIPTPQNLVTSTPLTTTFESF  LH LSQVLDRTNPLTQ     + 
Sbjct: 334 NMVRGTICGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKL 393

[Close]

BLAST of ClCG01G011250 vs. TAIR 10
Match: ATCG00190.1 (RNA polymerase subunit beta )

HSP 1 Score: 329.7 bits (844), Expect = 2.6e-90
Identity = 187/293 (63.82%), Postives = 198/293 (67.58%), Query Frame = 0


Query: 1   MQEQTIFIGNILLMNSPGTSIVNGLYRIVISQILQSPDIYY-------------CTIISD 60
           MQEQ IFIGNI LMNS GTSIVNG+YRIVI+QILQSP IYY              TIISD
Sbjct: 94  MQEQRIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHNGISVYTGTIISD 153

Query: 61  WGGRLELEIDRKARIWAR----------------------------------------EK 120
           WGGRLELEID+KARIWAR                                        EK
Sbjct: 154 WGGRLELEIDKKARIWARVSRKQKISILVLSSAMGLNLREILENVCYPEIFLSFLTDKEK 213

Query: 121 NQIGSKENAILEFYQQFSYVGRDPVFFESLCKQLQKKFFQQRCELGRI------------ 180
            +IGSKENAILEFYQQFS VG DP+F ESLCK+LQKKFF QRCELGRI            
Sbjct: 214 KKIGSKENAILEFYQQFSCVGGDPIFSESLCKELQKKFFHQRCELGRIGRRNINWRLNLN 273

Query: 181 ---EQYILLPRDILAAANHLIGLKFGMGTLDDMNHFKNKRICSVTDLLQDQFFLALVHLE 226
                  LLPRD+LAAA+HLIG+KFGMGTLDDMNH KNKRI SV DLLQDQ  LAL  LE
Sbjct: 274 IPQNNIFLLPRDVLAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQLGLALARLE 333

The following BLAST results are available for this feature:

BLAST of ClCG01G011250 vs. NCBI nr


Match Name	E-value	Identity	Description
APW82623.1	1.5e-92	64.97	RNA polymerase beta subunit [Citrullus lanatus subsp. vulgaris]	[more]
YP_009325981.1	1.5e-92	64.97	RNA polymerase beta subunit [Citrullus lanatus] >YP_009348023.1 RNA polymerase b...	[more]
YP_009420786.1	1.5e-92	64.97	RNA polymerase beta subunit [Citrullus colocynthis] >YP_009431549.1 RNA polymera...	[more]
QHD47277.1	5.8e-92	66.89	RNA polymerase beta subunit [Dalbergia odorifera]	[more]
AHM89856.1	7.6e-92	64.65	RNA polymerase beta subunit [Lagenaria siceraria]	[more]

BLAST of ClCG01G011250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP1	8.4e-94	64.33	DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3...	[more]
Q49L06	1.6e-92	62.42	DNA-directed RNA polymerase subunit beta OS=Eucalyptus globulus subsp. globulus ...	[more]
Q0G9M7	4.6e-92	61.78	DNA-directed RNA polymerase subunit beta OS=Liriodendron tulipifera OX=3415 GN=r...	[more]
Q09G54	4.6e-92	61.78	DNA-directed RNA polymerase subunit beta OS=Platanus occidentalis OX=4403 GN=rpo...	[more]
A0ZZ27	6.0e-92	66.21	DNA-directed RNA polymerase subunit beta OS=Gossypium barbadense OX=3634 GN=rpoB...	[more]

BLAST of ClCG01G011250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1P8LDX8	7.4e-93	64.97	DNA-directed RNA polymerase subunit beta OS=Citrullus mucosospermus OX=519315 GN...	[more]
A0A1P8LF53	7.4e-93	64.97	DNA-directed RNA polymerase subunit beta OS=Citrullus lanatus subsp. vulgaris OX...	[more]
A0A1P8LD96	7.4e-93	64.97	DNA-directed RNA polymerase subunit beta OS=Citrullus lanatus subsp. vulgaris OX...	[more]
A0A343A8A2	7.4e-93	64.97	DNA-directed RNA polymerase subunit beta OS=Citrullus lanatus OX=3654 GN=rpoB PE...	[more]
A0A249RXB4	7.4e-93	64.97	DNA-directed RNA polymerase subunit beta OS=Citrullus rehmii OX=260675 GN=rpoB P...	[more]

BLAST of ClCG01G011250 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00190.1	2.6e-90	63.82	RNA polymerase subunit beta	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.1100.10		coord: 2..38 e-value: 3.2E-10 score: 40.4 coord: 147..229 e-value: 6.6E-16 score: 59.2
None	No IPR available	PANTHER	PTHR20856:SF30	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA	coord: 1..68 coord: 95..234
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 2..234
IPR037034	RNA polymerase Rpb2, domain 2 superfamily	GENE3D	3.90.1110.10	RNA polymerase Rpb2, domain 2	coord: 115..146 e-value: 6.6E-16 score: 59.2 coord: 39..65 e-value: 3.2E-10 score: 40.4
IPR007642	RNA polymerase Rpb2, domain 2	PFAM	PF04561	RNA_pol_Rpb2_2	coord: 66..153 e-value: 2.2E-13 score: 50.3
IPR015712	DNA-directed RNA polymerase, subunit 2	PANTHER	PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	coord: 1..68 coord: 95..234

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G011250.1	ClCG01G011250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0032549	ribonucleoside binding