Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAACTGCGTGGTCTTGCCTTGCGTCCGGTCGCCGCAGAAGAATCTTAGAGGGCTCGAGAAAGCCACTGATTCAGCTACAACTGTTGTTGAGTCTGCTACAGAGTGCGGTAATAATTTTACTTCTACAACCAGAACCAGCCTCCAAGTTGGCGAATGCTTGAAAGAGCTCGAAAATCTTCTGGCTTCCTCAAAGATAGCCTACTCGGATGGAGGGGGAGCAAGGAAGGTGAAGATTGTGGTAACTAAGGAACAGTTTGAGTTGCTGTTGGCAAATGCAAAGAAGTTGCAAGCTCGACATAGATTGTTGAGCTATACAGTCCCCCGTAGAGGGTGTCAAAAATGGCGGCCGATTTTGTCTGCAATCGCGGAGGAAGAAGATTTTTGA
mRNA sequence
ATGGGAAACTGCGTGGTCTTGCCTTGCGTCCGGTCGCCGCAGAAGAATCTTAGAGGGCTCGAGAAAGCCACTGATTCAGCTACAACTGTTGTTGAGTCTGCTACAGAGTGCGGTAATAATTTTACTTCTACAACCAGAACCAGCCTCCAAGTTGGCGAATGCTTGAAAGAGCTCGAAAATCTTCTGGCTTCCTCAAAGATAGCCTACTCGGATGGAGGGGGAGCAAGGAAGGTGAAGATTGTGGTAACTAAGGAACAGTTTGAGTTGCTGTTGGCAAATGCAAAGAAGTTGCAAGCTCGACATAGATTGTTGAGCTATACAGTCCCCCGTAGAGGGTGTCAAAAATGGCGGCCGATTTTGTCTGCAATCGCGGAGGAAGAAGATTTTTGA
Coding sequence (CDS)
ATGGGAAACTGCGTGGTCTTGCCTTGCGTCCGGTCGCCGCAGAAGAATCTTAGAGGGCTCGAGAAAGCCACTGATTCAGCTACAACTGTTGTTGAGTCTGCTACAGAGTGCGGTAATAATTTTACTTCTACAACCAGAACCAGCCTCCAAGTTGGCGAATGCTTGAAAGAGCTCGAAAATCTTCTGGCTTCCTCAAAGATAGCCTACTCGGATGGAGGGGGAGCAAGGAAGGTGAAGATTGTGGTAACTAAGGAACAGTTTGAGTTGCTGTTGGCAAATGCAAAGAAGTTGCAAGCTCGACATAGATTGTTGAGCTATACAGTCCCCCGTAGAGGGTGTCAAAAATGGCGGCCGATTTTGTCTGCAATCGCGGAGGAAGAAGATTTTTGA
Protein sequence
MGNCVVLPCVRSPQKNLRGLEKATDSATTVVESATECGNNFTSTTRTSLQVGECLKELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVPRRGCQKWRPILSAIAEEEDF
Homology
BLAST of ClCG01G010970 vs. NCBI nr
Match:
KGN64995.1 (hypothetical protein Csa_022837 [Cucumis sativus])
HSP 1 Score: 190.7 bits (483), Expect = 8.1e-45
Identity = 102/140 (72.86%), Postives = 115/140 (82.14%), Query Frame = 0
Query: 1 MGNCVVLPCVRSPQKNLRGLEKATDSATTVVESATECGN-----NFTSTTRTSLQVGE-- 60
MGNC+VLP VRSPQK LRGL+KAT+ ATT+V SATECGN +F S+T+TSLQV E
Sbjct: 1 MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60
Query: 61 ----CLKELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVP 120
CLKELENLLAS KI YSD GA+KVKIVVTKEQF+LLL+NAKKLQ RHRLLSYT P
Sbjct: 61 NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120
Query: 121 RRGCQKWRPILSAIAEEEDF 130
R+GC+ WRP LSAI+EEEDF
Sbjct: 121 RKGCKNWRPTLSAISEEEDF 140
BLAST of ClCG01G010970 vs. NCBI nr
Match:
XP_038877793.1 (uncharacterized protein LOC120070018 isoform X1 [Benincasa hispida])
HSP 1 Score: 171.0 bits (432), Expect = 6.6e-39
Identity = 98/135 (72.59%), Postives = 105/135 (77.78%), Query Frame = 0
Query: 6 VLPCVRSPQKNLRGLEKATDSATTVVESATECGN-----NFTSTTRTSLQVGE------C 65
VL + PQK LR LEKATD SATECG +FTS TRT LQVGE C
Sbjct: 10 VLMPYQLPQKKLRELEKATD-------SATECGKDPLLLDFTSPTRTILQVGEVQNIVPC 69
Query: 66 LKELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVPRRGCQ 125
LKELENLLASSKIAYSDG GARKVKIVVTKEQF+LLLANAKKLQ+RHRLLSYT PR+GC+
Sbjct: 70 LKELENLLASSKIAYSDGAGARKVKIVVTKEQFKLLLANAKKLQSRHRLLSYTGPRKGCR 129
Query: 126 KWRPILSAIAEEEDF 130
KWRP LSAI+EEEDF
Sbjct: 130 KWRPTLSAISEEEDF 137
BLAST of ClCG01G010970 vs. NCBI nr
Match:
KAA0042344.1 (hypothetical protein E6C27_scaffold795G00420 [Cucumis melo var. makuwa] >TYK15468.1 hypothetical protein E5676_scaffold477G00390 [Cucumis melo var. makuwa])
HSP 1 Score: 159.1 bits (401), Expect = 2.6e-35
Identity = 87/121 (71.90%), Postives = 100/121 (82.64%), Query Frame = 0
Query: 1 MGNCVVLPCVRSPQKNLRGLEKATDSATTVVESATECGNN-----FTSTTRTSLQVGE-- 60
MGNC+VLP VRSPQK L+GL+KAT AT +V SA+ECGN+ S+T+TSLQVGE
Sbjct: 1 MGNCIVLPSVRSPQKKLQGLKKATGLATPIVYSASECGNDPLLKYCNSSTKTSLQVGEVR 60
Query: 61 ----CLKELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVP 111
CLKELENLLASSKI YSDGGGA+KVKIVVT+EQF+LLLANAKKLQ+R+RLLSYT P
Sbjct: 61 NVVPCLKELENLLASSKIVYSDGGGAKKVKIVVTREQFKLLLANAKKLQSRYRLLSYTGP 120
BLAST of ClCG01G010970 vs. NCBI nr
Match:
KAG6583721.1 (hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 154.1 bits (388), Expect = 8.4e-34
Identity = 86/113 (76.11%), Postives = 94/113 (83.19%), Query Frame = 0
Query: 1 MGNCVVLPCVRSPQKNLRGLEKATDSATTVVESATECGN-----NFTSTTRTSLQVGE-- 60
MGNC+VLPCVRSPQK LRG+EKATD ATT V+SATEC N +F+S+TRTSLQVGE
Sbjct: 1 MGNCIVLPCVRSPQKKLRGIEKATDLATT-VDSATECCNDHLLHDFSSSTRTSLQVGEVR 60
Query: 61 ----CLKELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHR 103
CLKELE LL SSKI YSDG GARKVKIVVTKEQF+LLLANAKKLQ+RHR
Sbjct: 61 DVVPCLKELEKLLVSSKIVYSDGAGARKVKIVVTKEQFKLLLANAKKLQSRHR 112
BLAST of ClCG01G010970 vs. NCBI nr
Match:
XP_023542404.1 (uncharacterized protein LOC111802317 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 142.9 bits (359), Expect = 1.9e-30
Identity = 78/128 (60.94%), Postives = 93/128 (72.66%), Query Frame = 0
Query: 1 MGNCVVLPCVRSPQKNLRGLEKATDSATTVVESATECGNNFTSTTRTSLQVGECLKELEN 60
MGNC++LPCV SP KNL + TVV+SATE GN+ L V CLKELEN
Sbjct: 136 MGNCIILPCVHSPSKNL------SPELATVVDSATEQGND------PLLDVVPCLKELEN 195
Query: 61 LLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVPRRGCQKWRPIL 120
LL K AYS GGGAR+VKIVVT+EQF+LLLANAKK+Q+ +RLLSY P RG +KWRP+L
Sbjct: 196 LLVYLKTAYSSGGGAREVKIVVTREQFKLLLANAKKMQSAYRLLSYRGPGRGRRKWRPML 251
Query: 121 SAIAEEED 129
S I+EEE+
Sbjct: 256 SVISEEEE 251
BLAST of ClCG01G010970 vs. ExPASy TrEMBL
Match:
A0A0A0LSY9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173150 PE=4 SV=1)
HSP 1 Score: 190.7 bits (483), Expect = 3.9e-45
Identity = 102/140 (72.86%), Postives = 115/140 (82.14%), Query Frame = 0
Query: 1 MGNCVVLPCVRSPQKNLRGLEKATDSATTVVESATECGN-----NFTSTTRTSLQVGE-- 60
MGNC+VLP VRSPQK LRGL+KAT+ ATT+V SATECGN +F S+T+TSLQV E
Sbjct: 1 MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60
Query: 61 ----CLKELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVP 120
CLKELENLLAS KI YSD GA+KVKIVVTKEQF+LLL+NAKKLQ RHRLLSYT P
Sbjct: 61 NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120
Query: 121 RRGCQKWRPILSAIAEEEDF 130
R+GC+ WRP LSAI+EEEDF
Sbjct: 121 RKGCKNWRPTLSAISEEEDF 140
BLAST of ClCG01G010970 vs. ExPASy TrEMBL
Match:
A0A5D3CW41 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00390 PE=4 SV=1)
HSP 1 Score: 159.1 bits (401), Expect = 1.3e-35
Identity = 87/121 (71.90%), Postives = 100/121 (82.64%), Query Frame = 0
Query: 1 MGNCVVLPCVRSPQKNLRGLEKATDSATTVVESATECGNN-----FTSTTRTSLQVGE-- 60
MGNC+VLP VRSPQK L+GL+KAT AT +V SA+ECGN+ S+T+TSLQVGE
Sbjct: 1 MGNCIVLPSVRSPQKKLQGLKKATGLATPIVYSASECGNDPLLKYCNSSTKTSLQVGEVR 60
Query: 61 ----CLKELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVP 111
CLKELENLLASSKI YSDGGGA+KVKIVVT+EQF+LLLANAKKLQ+R+RLLSYT P
Sbjct: 61 NVVPCLKELENLLASSKIVYSDGGGAKKVKIVVTREQFKLLLANAKKLQSRYRLLSYTGP 120
BLAST of ClCG01G010970 vs. ExPASy TrEMBL
Match:
A0A2Z6NQK5 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_378460 PE=4 SV=1)
HSP 1 Score: 59.3 bits (142), Expect = 1.4e-05
Identity = 47/136 (34.56%), Postives = 59/136 (43.38%), Query Frame = 0
Query: 1 MGNCVVLPCVRSPQKNLR-----GLEKATDSATTVVESATECGNNFTSTTRTSLQVGECL 60
MGNCV C P+K R G E +SA+ VE + R +Q GE
Sbjct: 1 MGNCVA--CYSQPKKQTRCPLIHGREIGVNSASAQVEKMNTASSKHYIAVRRKVQHGEVY 60
Query: 61 KELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVPR--RGC 120
L S R KIVVT +Q ELLL+ +KK Q + R+ S T R C
Sbjct: 61 HLAPFLRQSGTTTDDRKMKTRIAKIVVTTQQLELLLSGSKKFQIKTRVASVTKSSLLRRC 120
Query: 121 QKWRPILSAIAEEEDF 130
KW P L I E ++F
Sbjct: 121 PKWLPSLPTIPEVQNF 134
BLAST of ClCG01G010970 vs. ExPASy TrEMBL
Match:
A0A2K3MR02 (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g016348 PE=4 SV=1)
HSP 1 Score: 57.0 bits (136), Expect = 6.8e-05
Identity = 45/135 (33.33%), Postives = 60/135 (44.44%), Query Frame = 0
Query: 1 MGNCVVLPCVRSPQKN-----LRGLEKATDSATTVVESATECGNNFTSTTRTSLQVGECL 60
MGNCV C P+K ++G E + A+ VE + R +Q GE
Sbjct: 1 MGNCVT-SCYSQPKKQTGCPLIQGREIEVNKASAPVEKMNTASSKHYIAVRRKVQHGEDY 60
Query: 61 KELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVPR-RGCQ 120
L S + R VKIVVT EQ E+LL+ +KK Q + R+ T C
Sbjct: 61 HLAPFLRQSGRTTDDRKMKTRIVKIVVTTEQLEMLLSGSKKFQIKTRVAPVTKSSVLRCP 120
Query: 121 KWRPILSAIAEEEDF 130
KW P LS I E ++F
Sbjct: 121 KWLPSLSTIQEVQNF 134
BLAST of ClCG01G010970 vs. ExPASy TrEMBL
Match:
A0A5N6Q7Y4 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_000047 PE=4 SV=1)
HSP 1 Score: 57.0 bits (136), Expect = 6.8e-05
Identity = 35/70 (50.00%), Postives = 41/70 (58.57%), Query Frame = 0
Query: 64 SSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQ----ARHRLLSYTVPRRGCQKWRPI 123
+S+ A D G RKVKIVVTKEQ ELLL + KK Q A L S V GC+KW+P
Sbjct: 114 TSRTANHDTGKRRKVKIVVTKEQLELLLRSTKKFQSSVIAGQILGSSQVDVEGCRKWQPS 173
Query: 124 LSAIAEEEDF 130
L+ I E F
Sbjct: 174 LATIHEVHSF 183
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KGN64995.1 | 8.1e-45 | 72.86 | hypothetical protein Csa_022837 [Cucumis sativus] | [more] |
XP_038877793.1 | 6.6e-39 | 72.59 | uncharacterized protein LOC120070018 isoform X1 [Benincasa hispida] | [more] |
KAA0042344.1 | 2.6e-35 | 71.90 | hypothetical protein E6C27_scaffold795G00420 [Cucumis melo var. makuwa] >TYK1546... | [more] |
KAG6583721.1 | 8.4e-34 | 76.11 | hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_023542404.1 | 1.9e-30 | 60.94 | uncharacterized protein LOC111802317 [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0LSY9 | 3.9e-45 | 72.86 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173150 PE=4 SV=1 | [more] |
A0A5D3CW41 | 1.3e-35 | 71.90 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A2Z6NQK5 | 1.4e-05 | 34.56 | Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_378460 PE=4 SV... | [more] |
A0A2K3MR02 | 6.8e-05 | 33.33 | Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g016348 PE=4 SV=1 | [more] |
A0A5N6Q7Y4 | 6.8e-05 | 50.00 | Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_000047 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |