ClCG01G010970 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG01G010970
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr01: 17198070 .. 17198459 (-)
RNA-Seq ExpressionClCG01G010970
SyntenyClCG01G010970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAACTGCGTGGTCTTGCCTTGCGTCCGGTCGCCGCAGAAGAATCTTAGAGGGCTCGAGAAAGCCACTGATTCAGCTACAACTGTTGTTGAGTCTGCTACAGAGTGCGGTAATAATTTTACTTCTACAACCAGAACCAGCCTCCAAGTTGGCGAATGCTTGAAAGAGCTCGAAAATCTTCTGGCTTCCTCAAAGATAGCCTACTCGGATGGAGGGGGAGCAAGGAAGGTGAAGATTGTGGTAACTAAGGAACAGTTTGAGTTGCTGTTGGCAAATGCAAAGAAGTTGCAAGCTCGACATAGATTGTTGAGCTATACAGTCCCCCGTAGAGGGTGTCAAAAATGGCGGCCGATTTTGTCTGCAATCGCGGAGGAAGAAGATTTTTGA

mRNA sequence

ATGGGAAACTGCGTGGTCTTGCCTTGCGTCCGGTCGCCGCAGAAGAATCTTAGAGGGCTCGAGAAAGCCACTGATTCAGCTACAACTGTTGTTGAGTCTGCTACAGAGTGCGGTAATAATTTTACTTCTACAACCAGAACCAGCCTCCAAGTTGGCGAATGCTTGAAAGAGCTCGAAAATCTTCTGGCTTCCTCAAAGATAGCCTACTCGGATGGAGGGGGAGCAAGGAAGGTGAAGATTGTGGTAACTAAGGAACAGTTTGAGTTGCTGTTGGCAAATGCAAAGAAGTTGCAAGCTCGACATAGATTGTTGAGCTATACAGTCCCCCGTAGAGGGTGTCAAAAATGGCGGCCGATTTTGTCTGCAATCGCGGAGGAAGAAGATTTTTGA

Coding sequence (CDS)

ATGGGAAACTGCGTGGTCTTGCCTTGCGTCCGGTCGCCGCAGAAGAATCTTAGAGGGCTCGAGAAAGCCACTGATTCAGCTACAACTGTTGTTGAGTCTGCTACAGAGTGCGGTAATAATTTTACTTCTACAACCAGAACCAGCCTCCAAGTTGGCGAATGCTTGAAAGAGCTCGAAAATCTTCTGGCTTCCTCAAAGATAGCCTACTCGGATGGAGGGGGAGCAAGGAAGGTGAAGATTGTGGTAACTAAGGAACAGTTTGAGTTGCTGTTGGCAAATGCAAAGAAGTTGCAAGCTCGACATAGATTGTTGAGCTATACAGTCCCCCGTAGAGGGTGTCAAAAATGGCGGCCGATTTTGTCTGCAATCGCGGAGGAAGAAGATTTTTGA

Protein sequence

MGNCVVLPCVRSPQKNLRGLEKATDSATTVVESATECGNNFTSTTRTSLQVGECLKELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVPRRGCQKWRPILSAIAEEEDF
Homology
BLAST of ClCG01G010970 vs. NCBI nr
Match: KGN64995.1 (hypothetical protein Csa_022837 [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 8.1e-45
Identity = 102/140 (72.86%), Postives = 115/140 (82.14%), Query Frame = 0

Query: 1   MGNCVVLPCVRSPQKNLRGLEKATDSATTVVESATECGN-----NFTSTTRTSLQVGE-- 60
           MGNC+VLP VRSPQK LRGL+KAT+ ATT+V SATECGN     +F S+T+TSLQV E  
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  ----CLKELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVP 120
               CLKELENLLAS KI YSD  GA+KVKIVVTKEQF+LLL+NAKKLQ RHRLLSYT P
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120

Query: 121 RRGCQKWRPILSAIAEEEDF 130
           R+GC+ WRP LSAI+EEEDF
Sbjct: 121 RKGCKNWRPTLSAISEEEDF 140

BLAST of ClCG01G010970 vs. NCBI nr
Match: XP_038877793.1 (uncharacterized protein LOC120070018 isoform X1 [Benincasa hispida])

HSP 1 Score: 171.0 bits (432), Expect = 6.6e-39
Identity = 98/135 (72.59%), Postives = 105/135 (77.78%), Query Frame = 0

Query: 6   VLPCVRSPQKNLRGLEKATDSATTVVESATECGN-----NFTSTTRTSLQVGE------C 65
           VL   + PQK LR LEKATD       SATECG      +FTS TRT LQVGE      C
Sbjct: 10  VLMPYQLPQKKLRELEKATD-------SATECGKDPLLLDFTSPTRTILQVGEVQNIVPC 69

Query: 66  LKELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVPRRGCQ 125
           LKELENLLASSKIAYSDG GARKVKIVVTKEQF+LLLANAKKLQ+RHRLLSYT PR+GC+
Sbjct: 70  LKELENLLASSKIAYSDGAGARKVKIVVTKEQFKLLLANAKKLQSRHRLLSYTGPRKGCR 129

Query: 126 KWRPILSAIAEEEDF 130
           KWRP LSAI+EEEDF
Sbjct: 130 KWRPTLSAISEEEDF 137

BLAST of ClCG01G010970 vs. NCBI nr
Match: KAA0042344.1 (hypothetical protein E6C27_scaffold795G00420 [Cucumis melo var. makuwa] >TYK15468.1 hypothetical protein E5676_scaffold477G00390 [Cucumis melo var. makuwa])

HSP 1 Score: 159.1 bits (401), Expect = 2.6e-35
Identity = 87/121 (71.90%), Postives = 100/121 (82.64%), Query Frame = 0

Query: 1   MGNCVVLPCVRSPQKNLRGLEKATDSATTVVESATECGNN-----FTSTTRTSLQVGE-- 60
           MGNC+VLP VRSPQK L+GL+KAT  AT +V SA+ECGN+       S+T+TSLQVGE  
Sbjct: 1   MGNCIVLPSVRSPQKKLQGLKKATGLATPIVYSASECGNDPLLKYCNSSTKTSLQVGEVR 60

Query: 61  ----CLKELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVP 111
               CLKELENLLASSKI YSDGGGA+KVKIVVT+EQF+LLLANAKKLQ+R+RLLSYT P
Sbjct: 61  NVVPCLKELENLLASSKIVYSDGGGAKKVKIVVTREQFKLLLANAKKLQSRYRLLSYTGP 120

BLAST of ClCG01G010970 vs. NCBI nr
Match: KAG6583721.1 (hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154.1 bits (388), Expect = 8.4e-34
Identity = 86/113 (76.11%), Postives = 94/113 (83.19%), Query Frame = 0

Query: 1   MGNCVVLPCVRSPQKNLRGLEKATDSATTVVESATECGN-----NFTSTTRTSLQVGE-- 60
           MGNC+VLPCVRSPQK LRG+EKATD ATT V+SATEC N     +F+S+TRTSLQVGE  
Sbjct: 1   MGNCIVLPCVRSPQKKLRGIEKATDLATT-VDSATECCNDHLLHDFSSSTRTSLQVGEVR 60

Query: 61  ----CLKELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHR 103
               CLKELE LL SSKI YSDG GARKVKIVVTKEQF+LLLANAKKLQ+RHR
Sbjct: 61  DVVPCLKELEKLLVSSKIVYSDGAGARKVKIVVTKEQFKLLLANAKKLQSRHR 112

BLAST of ClCG01G010970 vs. NCBI nr
Match: XP_023542404.1 (uncharacterized protein LOC111802317 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.9 bits (359), Expect = 1.9e-30
Identity = 78/128 (60.94%), Postives = 93/128 (72.66%), Query Frame = 0

Query: 1   MGNCVVLPCVRSPQKNLRGLEKATDSATTVVESATECGNNFTSTTRTSLQVGECLKELEN 60
           MGNC++LPCV SP KNL      +    TVV+SATE GN+        L V  CLKELEN
Sbjct: 136 MGNCIILPCVHSPSKNL------SPELATVVDSATEQGND------PLLDVVPCLKELEN 195

Query: 61  LLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVPRRGCQKWRPIL 120
           LL   K AYS GGGAR+VKIVVT+EQF+LLLANAKK+Q+ +RLLSY  P RG +KWRP+L
Sbjct: 196 LLVYLKTAYSSGGGAREVKIVVTREQFKLLLANAKKMQSAYRLLSYRGPGRGRRKWRPML 251

Query: 121 SAIAEEED 129
           S I+EEE+
Sbjct: 256 SVISEEEE 251

BLAST of ClCG01G010970 vs. ExPASy TrEMBL
Match: A0A0A0LSY9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173150 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.9e-45
Identity = 102/140 (72.86%), Postives = 115/140 (82.14%), Query Frame = 0

Query: 1   MGNCVVLPCVRSPQKNLRGLEKATDSATTVVESATECGN-----NFTSTTRTSLQVGE-- 60
           MGNC+VLP VRSPQK LRGL+KAT+ ATT+V SATECGN     +F S+T+TSLQV E  
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  ----CLKELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVP 120
               CLKELENLLAS KI YSD  GA+KVKIVVTKEQF+LLL+NAKKLQ RHRLLSYT P
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120

Query: 121 RRGCQKWRPILSAIAEEEDF 130
           R+GC+ WRP LSAI+EEEDF
Sbjct: 121 RKGCKNWRPTLSAISEEEDF 140

BLAST of ClCG01G010970 vs. ExPASy TrEMBL
Match: A0A5D3CW41 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00390 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.3e-35
Identity = 87/121 (71.90%), Postives = 100/121 (82.64%), Query Frame = 0

Query: 1   MGNCVVLPCVRSPQKNLRGLEKATDSATTVVESATECGNN-----FTSTTRTSLQVGE-- 60
           MGNC+VLP VRSPQK L+GL+KAT  AT +V SA+ECGN+       S+T+TSLQVGE  
Sbjct: 1   MGNCIVLPSVRSPQKKLQGLKKATGLATPIVYSASECGNDPLLKYCNSSTKTSLQVGEVR 60

Query: 61  ----CLKELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVP 111
               CLKELENLLASSKI YSDGGGA+KVKIVVT+EQF+LLLANAKKLQ+R+RLLSYT P
Sbjct: 61  NVVPCLKELENLLASSKIVYSDGGGAKKVKIVVTREQFKLLLANAKKLQSRYRLLSYTGP 120

BLAST of ClCG01G010970 vs. ExPASy TrEMBL
Match: A0A2Z6NQK5 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_378460 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.4e-05
Identity = 47/136 (34.56%), Postives = 59/136 (43.38%), Query Frame = 0

Query: 1   MGNCVVLPCVRSPQKNLR-----GLEKATDSATTVVESATECGNNFTSTTRTSLQVGECL 60
           MGNCV   C   P+K  R     G E   +SA+  VE      +      R  +Q GE  
Sbjct: 1   MGNCVA--CYSQPKKQTRCPLIHGREIGVNSASAQVEKMNTASSKHYIAVRRKVQHGEVY 60

Query: 61  KELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVPR--RGC 120
                L  S           R  KIVVT +Q ELLL+ +KK Q + R+ S T     R C
Sbjct: 61  HLAPFLRQSGTTTDDRKMKTRIAKIVVTTQQLELLLSGSKKFQIKTRVASVTKSSLLRRC 120

Query: 121 QKWRPILSAIAEEEDF 130
            KW P L  I E ++F
Sbjct: 121 PKWLPSLPTIPEVQNF 134

BLAST of ClCG01G010970 vs. ExPASy TrEMBL
Match: A0A2K3MR02 (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g016348 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.8e-05
Identity = 45/135 (33.33%), Postives = 60/135 (44.44%), Query Frame = 0

Query: 1   MGNCVVLPCVRSPQKN-----LRGLEKATDSATTVVESATECGNNFTSTTRTSLQVGECL 60
           MGNCV   C   P+K      ++G E   + A+  VE      +      R  +Q GE  
Sbjct: 1   MGNCVT-SCYSQPKKQTGCPLIQGREIEVNKASAPVEKMNTASSKHYIAVRRKVQHGEDY 60

Query: 61  KELENLLASSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQARHRLLSYTVPR-RGCQ 120
                L  S +         R VKIVVT EQ E+LL+ +KK Q + R+   T      C 
Sbjct: 61  HLAPFLRQSGRTTDDRKMKTRIVKIVVTTEQLEMLLSGSKKFQIKTRVAPVTKSSVLRCP 120

Query: 121 KWRPILSAIAEEEDF 130
           KW P LS I E ++F
Sbjct: 121 KWLPSLSTIQEVQNF 134

BLAST of ClCG01G010970 vs. ExPASy TrEMBL
Match: A0A5N6Q7Y4 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_000047 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.8e-05
Identity = 35/70 (50.00%), Postives = 41/70 (58.57%), Query Frame = 0

Query: 64  SSKIAYSDGGGARKVKIVVTKEQFELLLANAKKLQ----ARHRLLSYTVPRRGCQKWRPI 123
           +S+ A  D G  RKVKIVVTKEQ ELLL + KK Q    A   L S  V   GC+KW+P 
Sbjct: 114 TSRTANHDTGKRRKVKIVVTKEQLELLLRSTKKFQSSVIAGQILGSSQVDVEGCRKWQPS 173

Query: 124 LSAIAEEEDF 130
           L+ I E   F
Sbjct: 174 LATIHEVHSF 183

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN64995.18.1e-4572.86hypothetical protein Csa_022837 [Cucumis sativus][more]
XP_038877793.16.6e-3972.59uncharacterized protein LOC120070018 isoform X1 [Benincasa hispida][more]
KAA0042344.12.6e-3571.90hypothetical protein E6C27_scaffold795G00420 [Cucumis melo var. makuwa] >TYK1546... [more]
KAG6583721.18.4e-3476.11hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023542404.11.9e-3060.94uncharacterized protein LOC111802317 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LSY93.9e-4572.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173150 PE=4 SV=1[more]
A0A5D3CW411.3e-3571.90Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A2Z6NQK51.4e-0534.56Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_378460 PE=4 SV... [more]
A0A2K3MR026.8e-0533.33Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g016348 PE=4 SV=1[more]
A0A5N6Q7Y46.8e-0550.00Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_000047 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G010970.1ClCG01G010970.1mRNA